[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/cluster/
commit: 6057e43d9d6ebf952530e8c19e7c996fece26327
Author: Arthur Zamarin gentoo org>
AuthorDate: Sat Dec 16 16:17:08 2023 +
Commit: Arthur Zamarin gentoo org>
CommitDate: Sat Dec 16 16:17:08 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6057e43d
sci-chemistry/cluster: Stabilize 1.3.081231-r2 amd64, #920145
Signed-off-by: Arthur Zamarin gentoo.org>
sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild
b/sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild
index 63f38eed67d2..3064f911fd89 100644
--- a/sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild
+++ b/sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild
@@ -12,7 +12,7 @@ S="${WORKDIR}"/${PN}1.3src
LICENSE="richardson"
SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
PATCHES=(
"${FILESDIR}"/${PV}-ldflags.patch
[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/cluster/, sci-chemistry/cluster/files/
commit: 67055ebbb2c4ef0b23687a3ee0c0769917e23bac
Author: Brahmajit Das gmail com>
AuthorDate: Fri Jun 16 18:16:49 2023 +
Commit: Andrew Ammerlaan gentoo org>
CommitDate: Mon Sep 11 07:25:59 2023 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=67055ebb
sci-chemistry/cluster: Fix error: ISO C++17 does not allow register storage
class
Closes: https://bugs.gentoo.org/898132
Signed-off-by: Brahmajit Das gmail.com>
Closes: https://github.com/gentoo/gentoo/pull/31488
Signed-off-by: Andrew Ammerlaan gentoo.org>
sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild | 31 ++
.../cluster/files/1.3.081231-drop-registers.patch | 23
2 files changed, 54 insertions(+)
diff --git a/sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild
b/sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild
new file mode 100644
index ..63f38eed67d2
--- /dev/null
+++ b/sci-chemistry/cluster/cluster-1.3.081231-r2.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit toolchain-funcs
+
+DESCRIPTION="Build lists of collections of interacting items"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/index.php;
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${PN}.${PV}.src.tgz;
+S="${WORKDIR}"/${PN}1.3src
+
+LICENSE="richardson"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+PATCHES=(
+ "${FILESDIR}"/${PV}-ldflags.patch
+ "${FILESDIR}"/${PV}-includes.patch
+ "${FILESDIR}"/${PV}-drop-registers.patch
+)
+
+src_configure() {
+ tc-export CXX
+ default
+}
+
+src_install() {
+ newbin ${PN} molprobity-${PN}
+ dodoc README.cluster
+}
diff --git a/sci-chemistry/cluster/files/1.3.081231-drop-registers.patch
b/sci-chemistry/cluster/files/1.3.081231-drop-registers.patch
new file mode 100644
index ..c00922591faa
--- /dev/null
+++ b/sci-chemistry/cluster/files/1.3.081231-drop-registers.patch
@@ -0,0 +1,23 @@
+Bug: https://bugs.gentoo.org/898132
+--- a/utility.cpp
b/utility.cpp
+@@ -107,8 +107,8 @@ int compArgStr(const char *str, const char *arg, int min) {
+ }
+
+ int parseInteger(const char *str, int start, int len) {
+- register int value = 0;
+- register char ch;
++ int value = 0;
++ char ch;
+ int neg = 0, inside = 0;
+
+ if (!str || start < 0) { return 0; }
+@@ -136,7 +136,7 @@ int parseInteger(const char *str, int start, int len) {
+ double parseReal(const char *str, int start, int len) {
+double value = 0.0, scale = 1.0, expscale = 1.0, expfact = 10.0;
+int expval = 0;
+- register char ch;
++ char ch;
+int inside = 0, infract = 0, inexp = 0, insn = 0, esn = 0;
+
+if (!str || start < 0) { return 0; }
[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/cluster/
commit: 6e772d8e9d9e89b8349327e64a2eeac8aeff8626
Author: Jakov Smolić gentoo org>
AuthorDate: Thu Oct 21 09:33:44 2021 +
Commit: Jakov Smolić gentoo org>
CommitDate: Thu Oct 21 09:55:25 2021 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6e772d8e
sci-chemistry/cluster: Port to EAPI 8
Signed-off-by: Jakov Smolić gentoo.org>
sci-chemistry/cluster/cluster-1.3.081231-r1.ebuild | 19 ++-
1 file changed, 10 insertions(+), 9 deletions(-)
diff --git a/sci-chemistry/cluster/cluster-1.3.081231-r1.ebuild
b/sci-chemistry/cluster/cluster-1.3.081231-r1.ebuild
index d274ed0d378..b5f0395734e 100644
--- a/sci-chemistry/cluster/cluster-1.3.081231-r1.ebuild
+++ b/sci-chemistry/cluster/cluster-1.3.081231-r1.ebuild
@@ -1,26 +1,27 @@
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=8
-inherit epatch toolchain-funcs
+inherit toolchain-funcs
DESCRIPTION="Build lists of collections of interacting items"
HOMEPAGE="http://kinemage.biochem.duke.edu/software/index.php;
SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${PN}.${PV}.src.tgz;
+S="${WORKDIR}"/${PN}1.3src
-SLOT="0"
LICENSE="richardson"
+SLOT="0"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-S="${WORKDIR}"/${PN}1.3src
+PATCHES=(
+ "${FILESDIR}"/${PV}-ldflags.patch
+ "${FILESDIR}"/${PV}-includes.patch
+)
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PV}-ldflags.patch \
- "${FILESDIR}"/${PV}-includes.patch
+src_configure() {
tc-export CXX
+ default
}
src_install() {
[gentoo-commits] repo/gentoo:master commit in: sci-chemistry/cluster/
commit: b2d96ed1d1279a92dd97b1258b2acdc448cfec0d
Author: Aaron Bauman gentoo org>
AuthorDate: Fri Dec 13 02:53:42 2019 +
Commit: Aaron Bauman gentoo org>
CommitDate: Fri Dec 13 03:25:07 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b2d96ed1
sci-chemistry/cluster: drop old EAPI
Signed-off-by: Aaron Bauman gentoo.org>
sci-chemistry/cluster/cluster-1.3.081231.ebuild | 29 -
1 file changed, 29 deletions(-)
diff --git a/sci-chemistry/cluster/cluster-1.3.081231.ebuild
b/sci-chemistry/cluster/cluster-1.3.081231.ebuild
deleted file mode 100644
index e9d3b8999e1..000
--- a/sci-chemistry/cluster/cluster-1.3.081231.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Build lists of collections of interacting items"
-HOMEPAGE="http://kinemage.biochem.duke.edu/software/index.php;
-SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/${PN}/${PN}.${PV}.src.tgz;
-
-SLOT="0"
-LICENSE="richardson"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-S="${WORKDIR}"/${PN}1.3src
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PV}-ldflags.patch \
- "${FILESDIR}"/${PV}-includes.patch
- tc-export CXX
-}
-
-src_install() {
- dobin ${PN}
- dodoc README.cluster
-}
