[gmx-users] Suggestions awaited
Dear all, I wanted to calculate the angle joining the normal to the tyrosine ring and the vector joining the succeeding residue. I tried using the g_sgangle option in gromacs to calculate the angle between these 2 groups, and the distance between the 2 grps but as soon as I selected the first grp frm the index file all the calculations were performed according to the first slection. The option to select the second grp frm the index file was not asked. Please help, Richa __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com ___ gmx-users mailing listgmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
[gmx-users] g_sgangle---facing problem using this option
Dear all, while using the g_sangle option in gromacs to calculate the angle between 2 groups, and distance between 2 grps I m facing problem. As soon as I select the first grp frm the index file all the calculations are performed according to the first option..it does not ask me the second grp. Please help, Richa Richa Taimni M.Sc(Final)Bioinformatics Banasthali Vidyapith Rajasthan __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com ___ gmx-users mailing listgmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
[gmx-users] How 2 remove these warnings
Hi, I am getting these two warnings while doing the pdb2gmx steps.Please give some suggestions on this problem. WARNING 1 [file AFA.top, line 350]: No default Ryckaert-Bell. types, using zeroes WARNING 2 [file AFA.top, line 455]: No default Ryckaert-Bell. types, using zeroes Excluding 3 bonded neighbours for Protein 1 Excluding 2 bonded neighbours for SOL 1480 processing coordinates... double-checking input for internal consistency Regards, Richa __ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com ___ gmx-users mailing listgmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
