[gmx-users] atom numbering

2012-08-16 Thread dariush 
Dear All,

I have bilayer system plus two proteins in my system. I numbered residues
manually, but after minimization number of residues for both protein 1 and 2
starts from 1. It means in VMD when I am going to pick res. 3 (resid 3), it
will highlight two res. 3, one in protein 1 and one in protein 2.
Do you know how should I figure it out?

Thanks,
Dariush




--
View this message in context: 
http://gromacs.5086.n6.nabble.com/atom-numbering-tp5000266.html
Sent from the GROMACS Users Forum mailing list archive at Nabble.com.
-- 
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Only plain text messages are allowed!
* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Re: [gmx-users] atom numbering

2012-08-16 Thread Justin Lemkul 



On 8/16/12 5:22 PM, dariush wrote:

Dear All,

I have bilayer system plus two proteins in my system. I numbered residues
manually, but after minimization number of residues for both protein 1 and 2
starts from 1. It means in VMD when I am going to pick res. 3 (resid 3), it
will highlight two res. 3, one in protein 1 and one in protein 2.
Do you know how should I figure it out?



genconf -renumber

-Justin

--


Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin


--
gmx-users mailing listgmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Only plain text messages are allowed!
* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists