RE: gpc-dev 22 Sep agenda and meeting notes

2020-09-21 Thread Mei Liu 
Attached please find notes from the PCORnet CDM Data Group meeting last Friday 
(9/18).

Mei

From: Gpc-dev  On Behalf Of Dan Connolly
Sent: Monday, September 21, 2020 9:20 AM
To: gpc-dev@listserv.kumc.edu
Subject: gpc-dev 22 Sep agenda and meeting notes

What else for tomorrow?

MCW is scheduled to scribe.
https://docs.google.com/document/d/1pd1qChbJ4Hs2LWkh2V8YcsSzgyWIRjbtflNlvqYGvz8/edit

current agenda snapshot:

  1.  Convene, take roll, review records and plan the next meeting(s).

 *   11:00 a.m. Central Time.
​Meeting ID and access code: 
817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 
(571) 317-3131
 *   Roll; Reminder - put site after your name in 
GoToMeeting<https://global.gotomeeting.com/meeting/join/817393381> preferences
GPC DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> 
represented? KUMC (chair), UIOWA, MCW (scribe), MCRI, UNMC, UTHSCSA, UTSW, MU, 
IndianaU, Utah, Allina, Intermountain, UTH
 *   Comments on the agenda? (ref 
SoftwareDev#tracking<https://informatics.gpcnetwork.org/trac/Project/wiki/SoftwareDev#tracking>)
 On last week’s 
763notes?<https://docs.google.com/document/d/1pd1qChbJ4Hs2LWkh2V8YcsSzgyWIRjbtflNlvqYGvz8/edit#heading=h.9ioc8gnd1ijp>
 (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>)
Recent tickets 
opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI 
(i.e. not intended for discussion)

*   #765 (get volume / quality threshold for Sentinel participation) 
created<https://informatics.gpcnetwork.org/trac/Project/ticket/765>
*   #766 (DeathDataSharing - document license / justification change) 
created<https://informatics.gpcnetwork.org/trac/Project/ticket/766>

 *   Next meeting(s): Sep 29; scribe: Allina? KUMC?

*   Note scribe 
rotation<https://docs.google.com/document/d/1fPoDn0pdVvC-Mct58X7wkGD2rNiId8aNZ9JG_WCbcf4/edit#heading=h.zbjzupqx0rh7>
 appendix
*   #759<https://informatics.gpcnetwork.org/trac/Project/ticket/759> 
covid19 PCORNet 
datamarts<https://informatics.gpcnetwork.org/trac/Project/ticket/759>: PHII 
(contracting group for CDC) is waiting for their award. 15 Sep + ~3 weeks?

  1.  PCORNet CDM Cycle 8, Third Refresh DC 
v5.13<https://pcornet.imeetcentral.com/drnoc-workgroups/folder/WzIwLDEyOTU2NTQ5XQ>?
 5 Oct distribution; 26 Oct results due
Ref 2020 Data Curation Queries from ​DRNOC Forum July 
2020<https://pcornet.imeetcentral.com/drnoc-workgroups/folder/WzIwLDEyOTgxNzU1XQ/WzIsNzEzMTYxNjld/>

 *   FW: CDM v6 draft specification for comment 
<http://listserv.kumc.edu/pipermail/gpc-dev/2020q3/011073.html>   Russ Waitman
Solicit 2 reviewers to start GPC’s review

  1.  
Milestone:tumor-reg-18<https://informatics.gpcnetwork.org/trac/Project/milestone/tumor-reg-18>

 *   #749<https://informatics.gpcnetwork.org/trac/Project/ticket/749> 
PCORNet style TUMOR 
table<https://informatics.gpcnetwork.org/trac/Project/ticket/749> - 
kumc-bmi/naaccr-tumor-data
<https://github.com/kumc-bmi/naaccr-tumor-data>#760<https://informatics.gpcnetwork.org/trac/Project/ticket/760>
 duplicates in tumor table: collect data from 
sites<https://informatics.gpcnetwork.org/trac/Project/ticket/760> - DROC 
Request 
#82<https://redcap.kumc.edu/redcap_v9.5.25/DataEntry/index.php?pid=16659=82_id=44812=gpc_droc_oversight_request>
 - SAS code for DROC #82
<http://listserv.kumc.edu/pipermail/gpc-dev/2020q3/011046.html>Build a TUMOR 
table, run SAS code and return results to 
https://redcap.kumc.edu/surveys/?s=PC3Y8DXNTH
any technique to get it into the form specified in tumor 
table.version1.2.xlsx<https://github.com/kumc-bmi/naaccr-tumor-data/blob/master/src/test/resources/gpc/unit/tumor%20table.version1.2.xlsx>
 is sufficient.

*   Submitted: UIOWA, UTHSCSA, MCW
*   (UNMC, Utah, Allina, Intermountain not expected to participate for 
reasons given in earlier meetings.)
*   KUMC - DC: to see that this gets done
*   MCRI -  Will be submitting this week
*   Indiana - Jeff   ETA mid-late Sept - Tony F.
*   UTSW - PR: Changed update to merge; ready to submit in the next few 
days (after 8 Sep) - still in progress
*   MU - Will look at the code from MCW and ask questions as needed

  1.  #411<https://informatics.gpcnetwork.org/trac/Project/ticket/411> Nebraska 
lexicon update
UNMC to send the updated ontology (RxNorm, SNOMED-CT, LOINC, ICD-10CM) to MCW, 
and Intermountain


wash your hands 
…<https://www.cdc.gov/coronavirus/2019-ncov/prepare/prevention.html> wear a 
mask and social distance

--
Dan



PCORnet_CDM_Data_Group_Meeting_2020-09-18.docx
Description: PCORnet_CDM_Data_Group_Meeting_2020-09-18.docx
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gpc-dev 22 Sep agenda and meeting notes

2020-09-21 Thread Dan Connolly 
What else for tomorrow?

MCW is scheduled to scribe.
https://docs.google.com/document/d/1pd1qChbJ4Hs2LWkh2V8YcsSzgyWIRjbtflNlvqYGvz8/edit

current agenda snapshot:

  1.  Convene, take roll, review records and plan the next meeting(s).

 *   11:00 a.m. Central Time.
​Meeting ID and access code: 
817-393-381; call +1 
(571) 317-3131

 *   Roll; Reminder - put site after your name in 
GoToMeeting preferences
GPC DevTeams 
represented? KUMC (chair), UIOWA, MCW (scribe), MCRI, UNMC, UTHSCSA, UTSW, MU, 
IndianaU, Utah, Allina, Intermountain, UTH

 *   Comments on the agenda? (ref 
SoftwareDev#tracking)
 On last week’s 
763notes?
 (#12)
Recent tickets 
opened/closed - FYI 
(i.e. not intended for discussion)

*   #765 (get volume / quality threshold for Sentinel participation) 
created

*   #766 (DeathDataSharing - document license / justification change) 
created

 *   Next meeting(s): Sep 29; scribe: Allina? KUMC?

*   Note scribe 
rotation
 appendix

*   #759 
covid19 PCORNet 
datamarts: PHII 
(contracting group for CDC) is waiting for their award. 15 Sep + ~3 weeks?

  2.  PCORNet CDM Cycle 8, Third Refresh DC 
v5.13?
 5 Oct distribution; 26 Oct results due
Ref 2020 Data Curation Queries from ​DRNOC Forum July 
2020

 *   FW: CDM v6 draft specification for comment 
   Russ Waitman
Solicit 2 reviewers to start GPC’s review

  3.  
Milestone:tumor-reg-18

 *   #749 
PCORNet style TUMOR 
table - 
kumc-bmi/naaccr-tumor-data
#760
 duplicates in tumor table: collect data from 
sites - DROC 
Request 
#82
 - SAS code for DROC #82
Build a TUMOR 
table, run SAS code and return results to 
https://redcap.kumc.edu/surveys/?s=PC3Y8DXNTH
any technique to get it into the form specified in tumor 
table.version1.2.xlsx
 is sufficient.

*   Submitted: UIOWA, UTHSCSA, MCW

*   (UNMC, Utah, Allina, Intermountain not expected to participate for 
reasons given in earlier meetings.)

*   KUMC - DC: to see that this gets done

*   MCRI -  Will be submitting this week

*   Indiana - Jeff   ETA mid-late Sept - Tony F.

*   UTSW - PR: Changed update to merge; ready to submit in the next few 
days (after 8 Sep) - still in progress

*   MU - Will look at the code from MCW and ask questions as needed

  4.  #411 Nebraska 
lexicon update
UNMC to send the updated ontology (RxNorm, SNOMED-CT, LOINC, ICD-10CM) to MCW, 
and Intermountain



wash your hands 
… wear a 
mask and social distance

--
Dan

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