Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-14 Thread Helmut Kudrnovsky 
>and start a normal windows console, just the one which is delivered by
windows itself and type RScript
>
>here on my side:
>
>Microsoft Windows [Version 10.0.10586]
>(c) 2015 Microsoft Corporation. Alle Rechte vorbehalten.
>
>C:\Users\>cd C:\Program Files\R\R-3.3.1\bin 

of course, first change to the R installation folder, see above



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Helmut
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Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-14 Thread Helmut Kudrnovsky 
Anna Petrášová wrote
> On Thu, Jul 14, 2016 at 9:20 PM, Helmut Kudrnovsky 

> hellik@

>  wrote:
>>>When I enter the command echo %PATH% I get:
>>>[...]
>>>Dnvm\;C:\Program Files
>> (x86)\Skype\Phone\;c:\users\buer3379\appdata\local\enthought\canopy\user\scripts;C:\Users\buer3379\AppData\Local\Enthough\Canopy\User;C:\Users\buer3379\AppData\Local\Enthought\Canopy\User\Scripts;C:\Program
>> Files\RStudio\bin;C:\Program Files\R\R-3.3.1\bin\x64
>>
>> ok, R is in %PATH%
>>
>> the script works here on my win 10 machine out of the box.
>>
>> have you installed all the R packages needed by the GRASS addon?
>>
>>
>>
> 
> When you launch Rscript from GRASS terminal (the black one) what do you
> get?

Cleaning up temporary files...
Starting GRASS GIS...
WARNUNG: Sperren gleichzeitiger Zugriffe auf ein Mapset ist unter Windows
 nicht möglich.

  __  ___   _____
 / / __ \/   | / ___/ ___/   / /  _/ ___/
/ / __/ /_/ / /| | \__ \\_  \   / / __ / / \__ \
   / /_/ / _, _/ ___ |___/ /__/ /  / /_/ // / ___/ /
   \/_/ |_/_/  |_///   \/___///

Welcome to GRASS GIS 7.3.svn (r68855)
GRASS GIS homepage:  http://grass.osgeo.org
This version running through:Command Shell
(C:\Windows\system32\cmd.exe)
Help is available with the command:  g.manual -i
See the licence terms with:  g.version -c
See citation options with:   g.version -x
If required, restart the GUI with:   g.gui wxpython
When ready to quit enter:exit

Launching  GUI in the background, please wait...
Microsoft Windows [Version 10.0.10586]
(c) 2015 Microsoft Corporation. Alle Rechte vorbehalten.

C:\Users\hkmyr>Rscript
Usage: /path/to/Rscript [--options] [-e expr [-e expr2 ...] | file] [args]

--options accepted are
  --help  Print usage and exit
  --version   Print version and exit
  --verbose   Print information on progress
  --default-packages=list
  Where 'list' is a comma-separated set
of package names, or 'NULL'
or options to R, in addition to --slave --no-restore, such as
  --save  Do save workspace at the end of the session
  --no-environDon't read the site and user environment files
  --no-site-file  Don't read the site-wide Rprofile
  --no-init-file  Don't read the user R profile
  --restore   Do restore previously saved objects at startup
  --vanilla   Combine --no-save, --no-restore, --no-site-file
--no-init-file and --no-environ

'file' may contain spaces but not shell metacharacters
Expressions (one or more '-e ') may be used *instead* of 'file'
See also  ?Rscript  from within R




-
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Helmut
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Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-14 Thread Anna Petrášová 
On Thu, Jul 14, 2016 at 9:57 PM, C. Buerger IV  wrote:
>> ok, R is in %PATH%
>> the script works here on my win 10 machine out of the box.
>> have you installed all the R packages needed by the GRASS addon?
>
>
> Yes, I have. It did not change anything. Nor has reinstalling everything,
> several times in various orders.
>
>> When you launch Rscript from GRASS terminal (the black one) what do you
>> get?
>
>
> The same error as before.

The error is from Python, so this should be different one. Please post it here.

>
> CLBIV
>
> C. L. Buerger IV
>
> On Thu, Jul 14, 2016 at 2:20 PM, Helmut Kudrnovsky  wrote:
>>
>> >When I enter the command echo %PATH% I get:
>> >[...]
>> >Dnvm\;C:\Program Files
>>
>> (x86)\Skype\Phone\;c:\users\buer3379\appdata\local\enthought\canopy\user\scripts;C:\Users\buer3379\AppData\Local\Enthough\Canopy\User;C:\Users\buer3379\AppData\Local\Enthought\Canopy\User\Scripts;C:\Program
>> Files\RStudio\bin;C:\Program Files\R\R-3.3.1\bin\x64
>>
>> ok, R is in %PATH%
>>
>> the script works here on my win 10 machine out of the box.
>>
>> have you installed all the R packages needed by the GRASS addon?
>>
>>
>>
>> -
>> best regards
>> Helmut
>> --
>> View this message in context:
>> http://osgeo-org.1560.x6.nabble.com/R-3-3-1-and-GRASSGIS-7-0-4-tp527p5276452.html
>> Sent from the Grass - Stats mailing list archive at Nabble.com.
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>
>
>
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Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-14 Thread C. Buerger IV 
>
> ok, R is in %PATH%
> the script works here on my win 10 machine out of the box.
> have you installed all the R packages needed by the GRASS addon?


Yes, I have. It did not change anything. Nor has reinstalling everything,
several times in various orders.

When you launch Rscript from GRASS terminal (the black one) what do you get?


The same error as before.

CLBIV

C. L. Buerger IV

On Thu, Jul 14, 2016 at 2:20 PM, Helmut Kudrnovsky  wrote:

> >When I enter the command echo %PATH% I get:
> >[...]
> >Dnvm\;C:\Program Files
>
> (x86)\Skype\Phone\;c:\users\buer3379\appdata\local\enthought\canopy\user\scripts;C:\Users\buer3379\AppData\Local\Enthough\Canopy\User;C:\Users\buer3379\AppData\Local\Enthought\Canopy\User\Scripts;C:\Program
> Files\RStudio\bin;C:\Program Files\R\R-3.3.1\bin\x64
>
> ok, R is in %PATH%
>
> the script works here on my win 10 machine out of the box.
>
> have you installed all the R packages needed by the GRASS addon?
>
>
>
> -
> best regards
> Helmut
> --
> View this message in context:
> http://osgeo-org.1560.x6.nabble.com/R-3-3-1-and-GRASSGIS-7-0-4-tp527p5276452.html
> Sent from the Grass - Stats mailing list archive at Nabble.com.
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Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-14 Thread Anna Petrášová 
On Thu, Jul 14, 2016 at 9:20 PM, Helmut Kudrnovsky  wrote:
>>When I enter the command echo %PATH% I get:
>>[...]
>>Dnvm\;C:\Program Files
> (x86)\Skype\Phone\;c:\users\buer3379\appdata\local\enthought\canopy\user\scripts;C:\Users\buer3379\AppData\Local\Enthough\Canopy\User;C:\Users\buer3379\AppData\Local\Enthought\Canopy\User\Scripts;C:\Program
> Files\RStudio\bin;C:\Program Files\R\R-3.3.1\bin\x64
>
> ok, R is in %PATH%
>
> the script works here on my win 10 machine out of the box.
>
> have you installed all the R packages needed by the GRASS addon?
>
>
>

When you launch Rscript from GRASS terminal (the black one) what do you get?

> -
> best regards
> Helmut
> --
> View this message in context: 
> http://osgeo-org.1560.x6.nabble.com/R-3-3-1-and-GRASSGIS-7-0-4-tp527p5276452.html
> Sent from the Grass - Stats mailing list archive at Nabble.com.
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Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-13 Thread C. Buerger IV 
When I enter the command echo %PATH% I get:

C:\Program Files\Grass GIS 7.0.7\lib;C:\Program Files\GRASS GIS
7.0.4\bin;C:\Users\buer3379\AppData\Roaming\GRASS7\addons\bin;{app};C:\Program
Files\GRASS GIS 7.0.4\estrabin;C:\Program Files\GRASS GIS
7.0.4\bin;C:\Program
Files\Oracle\Java\javapath;C:\Windows\System32;C:\Windows;C:\Windows\System32\wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Windowssystem32\config\systemprofile\.dnx\bin;C:\Program
Files\Microsoft\DNS
Dnvm\;C:\Program Files
(x86)\Skype\Phone\;c:\users\buer3379\appdata\local\enthought\canopy\user\scripts;C:\Users\buer3379\AppData\Local\Enthough\Canopy\User;C:\Users\buer3379\AppData\Local\Enthought\Canopy\User\Scripts;C:\Program
Files\RStudio\bin;C:\Program Files\R\R-3.3.1\bin\x64

Reassigning the PATH variable did not affect anything. I got the same error
as before.


any idea?
> maybe around here?
> "Before further steps, we will set our working directory so that the input
> population files and text files we are going to create in the following
> section are saved in one directory and easily accessible. You can do that
> from menu Settings → GRASS working environment → Change working directory.
> Select (or create) a directory and move there the downloaded files
> population_projection.csv and population_trend.csv. "


I had questions about this part, or its placement in the order of the
walkthrough, and contacted an individual on the OSGEO team at NC State
about them. That individual. That person seemed unconcerned about it, but
perhaps I did not express my concerns clearly enough. I did do that part,
though I still do not understand why it should be done that far ahead of
the step that uses the population data.

Thank you for your help and appologies for getting back to you so late,

C. L. Buerger IV

On Fri, Jul 8, 2016 at 6:45 PM, Helmut Kudrnovsky  wrote:

> C. Buerger IV wrote
> > I'm attempting to use the FUTURES
> > 
> https://grasswiki.osgeo.org/wiki/Workshop_on_urban_growth_modeling_with_FUTURES#Softwaremodel
> > for GRASSGIS, which requires an interface with R to use the drudge
> > function. I'm running Windows 7 and the automatic linkup between R and
> > GRASS does not seem to be happening. When working from the FUTURES
> package
> > I have run:
> >
> >  r.futures.potential -d input=sampling@practice1 output=potential.csv
> >
> columns=devpressure_0_5_92,slope,road_dens_perc,forest_1992_smooth_perc,dist_to_water_km,dist_to_protected_km,dist_interchanges_km,travel_time_cities
> > developed_column=urban_change_clip subregions_column=counties
> > min_variables=4 --overwrite
> >
> > and get:
> >
> > Running automatic model selection ...
> > Traceback (most recent call last):
> >   File "C:\Users\buer3379\AppData\Roaming\GRASS7\addons/scri
> > pts/r.futures.potential.py", line 185, in
> > 
> > sys.exit(main())
> >   File "C:\Users\buer3379\AppData\Roaming\GRASS7\addons/scri
> > pts/r.futures.potential.py", line 158, in main
> > stdout=subprocess.PIPE, stderr=subprocess.PIPE)
> >   File "C:\OSGEO4~1\apps\Python27\lib\subprocess.py", line
> > 711, in __init__
> > errread, errwrite)
> >   File "C:\OSGEO4~1\apps\Python27\lib\subprocess.py", line
> > 948, in _execute_child
> > startupinfo)
> > WindowsError: [Error 2] The system cannot find the file
> > specified
> >
> > In just attempting to run R via R--save I get:
> >
> > R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
> > Copyright (C) 2016 The R Foundation for Statistical Computing
> > Platform: x86_64-w64-mingw32/x64 (64-bit)
> > R is free software and comes with ABSOLUTELY NO WARRANTY.
> > You are welcome to redistribute it under certain conditions.
> > Type 'license()' or 'licence()' for distribution details.
> >   Natural language support but running in an English locale
> > R is a collaborative project with many contributors.
> > Type 'contributors()' for more information and
> > 'citation()' on how to cite R or R packages in publications.
> > Type 'demo()' for some demos, 'help()' for on-line help, or
> > 'help.start()' for an HTML browser interface to help.
> > Type 'q()' to quit R.
> > During startup - Warning messages:
> > 1: Setting LC_CTYPE=en_US.cp1252 failed
> > 2: Setting LC_COLLATE=en_US.cp1252 failed
> > 3: Setting LC_TIME=en_US.cp1252 failed
> > 4: Setting LC_MONETARY=en_US.cp1252 failed
> >>
> >
> > Does anyone have any pointers or tips to work around this problem.  Any
> > ideas would be appreicated.
> >
> > C. L. Buerger IV
>
> could you type in the winGRASS windows console:
>
> echo %PATH%
>
> ?
>
>
>
>
> -
> best regards
> Helmut
> --
> View this message in context:
> http://osgeo-org.1560.x6.nabble.com/R-3-3-1-and-GRASSGIS-7-0-4-tp527p5275499.html
> Sent from the Grass - Stats mailing list archive at Nabble.com.
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>

Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-08 Thread Helmut Kudrnovsky 
C. Buerger IV wrote
> I'm attempting to use the FUTURES
> https://grasswiki.osgeo.org/wiki/Workshop_on_urban_growth_modeling_with_FUTURES#Softwaremodel
> for GRASSGIS, which requires an interface with R to use the drudge
> function. I'm running Windows 7 and the automatic linkup between R and
> GRASS does not seem to be happening. When working from the FUTURES package
> I have run:
> 
>  r.futures.potential -d input=sampling@practice1 output=potential.csv
> columns=devpressure_0_5_92,slope,road_dens_perc,forest_1992_smooth_perc,dist_to_water_km,dist_to_protected_km,dist_interchanges_km,travel_time_cities
> developed_column=urban_change_clip subregions_column=counties
> min_variables=4 --overwrite
> 
> and get:
> 
> Running automatic model selection ...
> Traceback (most recent call last):
>   File "C:\Users\buer3379\AppData\Roaming\GRASS7\addons/scri
> pts/r.futures.potential.py", line 185, in 
> 
> sys.exit(main())
>   File "C:\Users\buer3379\AppData\Roaming\GRASS7\addons/scri
> pts/r.futures.potential.py", line 158, in main
> stdout=subprocess.PIPE, stderr=subprocess.PIPE)
>   File "C:\OSGEO4~1\apps\Python27\lib\subprocess.py", line
> 711, in __init__
> errread, errwrite)
>   File "C:\OSGEO4~1\apps\Python27\lib\subprocess.py", line
> 948, in _execute_child
> startupinfo)
> WindowsError: [Error 2] The system cannot find the file
> specified
> 
> In just attempting to run R via R--save I get:
> 
> R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
> Copyright (C) 2016 The R Foundation for Statistical Computing
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
>   Natural language support but running in an English locale
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> During startup - Warning messages:
> 1: Setting LC_CTYPE=en_US.cp1252 failed
> 2: Setting LC_COLLATE=en_US.cp1252 failed
> 3: Setting LC_TIME=en_US.cp1252 failed
> 4: Setting LC_MONETARY=en_US.cp1252 failed
>>
> 
> Does anyone have any pointers or tips to work around this problem.  Any
> ideas would be appreicated.
> 
> C. L. Buerger IV

could you type in the winGRASS windows console:

echo %PATH%

?




-
best regards
Helmut
--
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Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-08 Thread Helmut Kudrnovsky 
Anna Petrášová wrote
> Hi,
> 
> In order for GRASS to be able to find R executables, R must be on the
> PATH variable. Follow for example this solution:
> 
> https://pvanb.wordpress.com/2014/12/17/access-r-from-grass-gis-on-windows/
> 
> to make R accessible from GRASS permanently. A simple but temporary
> solution is to open GRASS GIS and paste the path to R in the black
> terminal:
> 
> set PATH=%PATH%;C:\Program Files\R\R-3.3.1\bin
> 
> but this has to be repeated after restarting GRASS session.
> 
> Anna
> 
> 
> 
> On Fri, Jul 1, 2016 at 4:19 PM, C. Buerger IV 

> cbuerger4@

>  wrote:
>> I'm attempting to use the FUTURES model for GRASSGIS, which requires an
>> interface with R to use the drudge function. I'm running Windows 7 and
>> the
>> automatic linkup between R and GRASS does not seem to be happening. When
>> working from the FUTURES package
>> I have run:
>>
>>  r.futures.potential -d input=sampling@practice1 output=potential.csv
>> columns=devpressure_0_5_92,slope,road_dens_perc,forest_1992_smooth_perc,dist_to_water_km,dist_to_protected_km,dist_interchanges_km,travel_time_cities
>> developed_column=urban_change_clip subregions_column=counties
>> min_variables=4 --overwrite
>>
>> and get:
>>
>> Running automatic model selection ...
>> Traceback (most recent call last):
>>   File "C:\Users\buer3379\AppData\Roaming\GRASS7\addons/scri
>> pts/r.futures.potential.py", line 185, in 
> 
>> sys.exit(main())
>>   File "C:\Users\buer3379\AppData\Roaming\GRASS7\addons/scri
>> pts/r.futures.potential.py", line 158, in main
>> stdout=subprocess.PIPE, stderr=subprocess.PIPE)
>>   File "C:\OSGEO4~1\apps\Python27\lib\subprocess.py", line
>> 711, in __init__
>> errread, errwrite)
>>   File "C:\OSGEO4~1\apps\Python27\lib\subprocess.py", line
>> 948, in _execute_child
>> startupinfo)
>> WindowsError: [Error 2] The system cannot find the file
>> specified
>>
>> In just attempting to run R via R--save I get:
>>
>> R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
>> Copyright (C) 2016 The R Foundation for Statistical Computing
>> Platform: x86_64-w64-mingw32/x64 (64-bit)
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution details.
>>   Natural language support but running in an English locale
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>> Type 'demo()' for some demos, 'help()' for on-line help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>> During startup - Warning messages:
>> 1: Setting LC_CTYPE=en_US.cp1252 failed
>> 2: Setting LC_COLLATE=en_US.cp1252 failed
>> 3: Setting LC_TIME=en_US.cp1252 failed
>> 4: Setting LC_MONETARY=en_US.cp1252 failed
>>>
>>
>> Does anyone have any pointers or tips to work around this problem.  Any
>> ideas would be appreicated.

just tested it now with standalone-winGRASS

System Info 
GRASS Version: 7.3.svn  
GRASS SVN revision: r68855  
Build date: 2016-07-06  
Build platform: x86_64-w64-mingw32  
GDAL: 2.0.2 
PROJ.4: 4.9.2   
GEOS: 3.5.0 
SQLite: 3.7.17  
Python: 2.7.5   
wxPython: 2.8.12.1  
Platform: Windows-8-6.2.9200

- without any change to %PATH%

- with the example from [1] (n.b. not exactly because too lazy and to tired
to follow all the exercises late at night)


r.futures.potential -d input=sampling output=potential.csv
columns=devpressure_0_5_92,slope,road_dens_perc,forest_1992_smooth_perc,dist_to_water_km,dist_to_protected_km,dist_interchanges_km,travel_time_cities
developed_column=urban_change_clip subregions_column=counties
min_variables=4
Running automatic model selection ...
Best model summary:
-
Beim Start - Warnmeldungen:
1: Setting LC_CTYPE=de_AT.cp1252 failed 
2: Setting LC_COLLATE=de_AT.cp1252 failed 
3: Setting LC_TIME=de_AT.cp1252 failed 
4: Setting LC_MONETARY=de_AT.cp1252 failed 
Fixed term is "(Intercept)"
Es gab 16 Warnungen (Anzeige mit warnings())
Generalized linear mixed model fit by maximum likelihood (Laplace
  Approximation) [glmerMod]
 Family: binomial  ( logit )
Formula: urban_change_clip ~

Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-08 Thread Helmut Kudrnovsky 
>In order for GRASS to be able to find R executables, R must be on the
>PATH variable.

in the standalone winGRASS installer R is already in the %PATH% variable, so
no extra work is needed.

I hope I'll find some time to implement this also in OSGeo4W-winGRASS.

see in original report above, R is in %PATH% as R starts in the winGRASS
windows console.





-
best regards
Helmut
--
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Re: [GRASS-stats] R 3.3.1 and GRASSGIS 7.0.4

2016-07-08 Thread Helmut Kudrnovsky 
[please keep it on the ML]

>A Standalone install. At the time it seemed like what I wanted.

tested here:

System Info 
GRASS Version: 7.3.svn  
GRASS SVN revision: r68855  
Build date: 2016-07-06  
Build platform: x86_64-w64-mingw32  
GDAL: 2.0.2 
PROJ.4: 4.9.2   
GEOS: 3.5.0 
SQLite: 3.7.17  
Python: 2.7.5   
wxPython: 2.8.12.1  
Platform: Windows-8-6.2.9200 

typing R in the console:

Cleaning up temporary files...
Starting GRASS GIS...
WARNUNG: Sperren gleichzeitiger Zugriffe auf ein Mapset ist unter Windows
 nicht möglich.

  __  ___   _____
 / / __ \/   | / ___/ ___/   / /  _/ ___/
/ / __/ /_/ / /| | \__ \\_  \   / / __ / / \__ \
   / /_/ / _, _/ ___ |___/ /__/ /  / /_/ // / ___/ /
   \/_/ |_/_/  |_///   \/___///

Welcome to GRASS GIS 7.3.svn (r68855)
GRASS GIS homepage:  http://grass.osgeo.org
This version running through:Command Shell
(C:\Windows\system32\cmd.exe)
Help is available with the command:  g.manual -i
See the licence terms with:  g.version -c
See citation options with:   g.version -x
If required, restart the GUI with:   g.gui wxpython
When ready to quit enter:exit

Launching  GUI in the background, please wait...
Microsoft Windows [Version 10.0.10586]
(c) 2015 Microsoft Corporation. Alle Rechte vorbehalten.

C:\Users\>R

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

>I'm running Windows 7 and the automatic linkup between R and GRASS does not
seem to be happening. 

in the standalone R is in the %PATH% variable, so more investigation in the
r.future-script is needed.





-
best regards
Helmut
--
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