[GRASS-user] gdal_translate too many command options
Dear community
The main aim is to produce a mask of a raster file with data > 0
Code:
r.mask raster=ch_apple_presence_total_pollinator_abundance_spring
maskcats="0.01 thru 1"
ERROR: The raster map
must be integer (CELL type) in order to use the 'maskcats' parameter
Because of the error I followed the help here:
https://gis.stackexchange.com/questions/197145/error-in-r-thin-qgis-grass-in
put-raster-must-be-of-type-cell
However, wen running the code suggested with gdal_translate, I got an error
gdal_translate -co "ch_apple_presence_total_pollinator_abundance_spring "
ch_apple_presence_total_pollinator_abundance_spring.tif bit_
ch_apple_presence_total_pollinator_abundance_spring.tif
r.null map=ch_apple_presence_total_pollinator_abundance_spring setnull=1
gdal_translate -co ch_apple_presence_total_pollinator_abundance_spring
ch_apple_presence_total_pollinator_abundance_spring.tif bit_
ch_apple_presence_total_pollinator_abundance_spring.tif
ERROR 6: Too many command options
'ch_apple_presence_total_pollinator_abundance_spring.tif'
Usage: gdal_translate [--help] [--help-general] [--long-
usage]
[-ot {Byte/Int8/Int16/UInt16/UInt32/Int32/UInt64/Int6
4/Float32/Float64/
CInt16/CInt32/CFloat32/CFloat64}] [-strict]
[-if ]... [-of ]
[-b ] [-mask ] [-expand {gray|rgb|rgba}]
[-outsize [%]|0 [%]|0] [-tr
]
[-ovr |AUTO|AUTO-|NONE]
[-r
{nearest,bilinear,cubic,cubicspline,lanczos,average,mode}]
[-unscale] [-scale[_bn] [
[ ]]]... [-exponent[_bn] ]...
[-srcwin] [-epo] [-eco]
[-projwin] [-projwin_srs
]
[-a_srs ] [-a_coord_epoch ]
[-a_ullr] [-a_nodata ]
[-a_gt ]
[-a_scale ] [-a_offset ]
[-nogcp] [-gcp
[]]...
|-colorinterp{_bn}
{red|green|blue|alpha|gray|undefined}]
|-colorinterp
{red|green|blue|alpha|gray|undefined},...]
[-mo =]... [-q] [-sds]
[-co =]... [-stats] [-norat] [-noxmp]
[-oo =]...
Thanks a lot
Sibylle
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[GRASS-user] r.boxplot values>0
Dear community Is it possible to use the r.boxplto addon and just plot values > 0, similar to the "where" function in v.boxplot. I need r.boxplot, because I am merging a raster and a shape file (regions) to plot boxplots of the raster file separated for the regions in the shape file. v.boxplot -h --overwrite map=schools_wake column=CORECAPACI where="CORECAPACI >0" group_by=ADDRCITY order=ascending Kind regards Sibylle ___ grass-user mailing list grass-user@lists.osgeo.org https://lists.osgeo.org/mailman/listinfo/grass-user
Re: [GRASS-user] Using RStudio in a GRASS GIS session
Dear community Dear Roger I suppose it is my name Here the output from the console: C:\Users\Sibylle Stöckli> C:\Users\Sibylle Stöckli> ERROR: Unable to read WIND file: not enough values to unpack (expected 2, got 1) library(rgrass) Der Befehl "library" ist entweder falsch geschrieben oder konnte nicht gefunden werden. Kind regards Sibylle -Original Message- From: Roger Bivand Sent: Friday, April 19, 2024 4:31 PM To: sibylle.stoec...@gmx.ch Cc: grass-user@lists.osgeo.org Subject: Re: [GRASS-user] Using RStudio in a GRASS GIS session Please see: https://rsbivand.github.io/rgrass/articles/use.html. https://rsbivand.github.io/rgrass/articles/use.html Do you have a GRASS location and wish to use R on the data in that location? Then start GRASS first and start rstudio from inside GRASS. The error messages suggest that something is missing in your installation. Is your query related to https://stat.ethz.ch/pipermail/r-help/2024-April/479232.html ? -- Roger Bivand Emeritus Professor Norwegian School of Economics Postboks 3490 Ytre Sandviken, 5045 Bergen, Norway roger.biv...@nhh.no ___ grass-user mailing list grass-user@lists.osgeo.org https://lists.osgeo.org/mailman/listinfo/grass-user
Re: [GRASS-user] Using RStudio in a GRASS GIS session
Dear community
Thank you very much for all your input.
Unfortunately I got always the same error
The command "rstudio" is either misspelled or
could not be found.
The command "GRASS" is either misspelled or
could not be found.
Find here some info about the operating system:
GRASS version: 8.3.2
Code revision: 695385bb79
Build date: 2024-03-07
Build platform: x86_64-w64-mingw32
GDAL: 3.8.4
PROJ: 9.3.1
GEOS: 3.12.1
SQLite: 3.41.1
Python: 3.9.18
wxPython: 4.2.1
Platform: Windows-10-10.0.19045-SP0 .
Kind regards
Sibylle
From: grass-user On Behalf Of Bernardo
Santos via grass-user
Sent: Friday, April 19, 2024 11:09 AM
To: Veronica Andreo ; Veronica Andreo via grass-user
; Micha Silver ; Paulo van
Breugel
Subject: Re: [GRASS-user] Using RStudio in a GRASS GIS session
Hi Sybille,
I have never tried opening Rstudio from the GRASS terminal, but I know that it
is possible to open R. So as others have mentioned, you could try to first open
R (from the GRASS terminal) and within it try `library(rgrass)` (or
`install.packages("rgrass")` if it was not installed yet).
But I also know there are some issues when working with both R/RStudio and
GRASS in Windows, also related to how GRASS was installed and if R/Rstudio are
recognized in the PATH variables. Please take a look at these notes here and
check if any of that helps you: Connecting to GRASS from R in Windows · Issue
#10 · NINAnor/oneimpact (github.com)
<https://github.com/NINAnor/oneimpact/issues/10>
Best
Bernardo
Em sexta-feira, 19 de abril de 2024 às 08:13:40 GMT+2, Paulo van Breugel via
grass-user mailto:grass-user@lists.osgeo.org> >
escreveu:
>From the message that library is not found, I wonder, did you type
GRASS> rstudio & library(grass)
all on the command line?
Just to be sure, you should ope Grass gis. And in the grass gis command line,
type
rstudio &
Next, after RStudio opens, you type the following in RStudio
library(grass)
On April 18, 2024 7:56:03 PM GMT+02:00, Veronica Andreo via grass-user
mailto:grass-user@lists.osgeo.org> > wrote:
Hello Sibylle,
Perhaps you can tell us some details about your operative system, which GRASS
installer you are using (i.e., standalone or OSGeo4W), how did you start GRASS,
if R and RStudio are installed.
>From your email, I do not understand why GRASS is not recognized as a command,
>as it seems you **are** already within a GRASS session on the terminal? (i.e.
>you have a GRASS prompt there `GRASS>`).
Vero
El jue, 18 abr 2024 a las 12:06, Micha Silver via grass-user
(mailto:grass-user@lists.osgeo.org> >) escribió:
Silly question, do you have the 'rgrass' library installed?
i.e. can you do `library(rgrass)` at the R command prompt (without rstudio)?
On 17/04/2024 21:34, sibylle via grass-user wrote:
Dear community
To use RStudio in a GRASS GIS session I used the command line
GRASS> rstudio &
library(rgrass)
(see https://grasswiki.osgeo.org/wiki/R_statistics/rgrass)
Unfortunately I was not able to solve the error message:
- The command "GRASS" is either misspelled or
could not be found.
- The command "library" is either misspelled or
could not be found.
Kind regards
Sibylle
(Wed Apr 17 20:25:17 2024)
GRASS> rstudio &
Der Befehl "GRASS" ist entweder falsch geschrieben oder
konnte nicht gefunden werden.
(Wed Apr 17 20:25:17 2024) Command ended with non-zero return code 1 (0 sec)
(Wed Apr 17 20:25:29 2024)
library(rgrass)
Der Befehl "library" ist entweder falsch geschrieben oder
konnte nicht gefunden werden.
(Wed Apr 17 20:25:29 2024) Command ended with non-zero return code 1 (0 sec)
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--
Micha Silver
Ben Gurion Univ.
Sde Boker, Remote Sensing Lab
cell: +972-523-665918
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Re: [GRASS-user] Using RStudio in a GRASS GIS session
Dear Veronica and Micha Find enclosed some info about the operative system: System Info GRASS version: 8.3.2 Code revision: 695385bb79 Build date: 2024-03-07 Build platform: x86_64-w64-mingw32 GDAL: 3.8.4 PROJ: 9.3.1 GEOS: 3.12.1 SQLite: 3.41.1 Python: 3.9.18 wxPython: 4.2.1 Platform: Windows-10-10.0.19045-SP0 Similarly when using library(rgrass) the same error: "library" is either misspelled or could not be found. library(rgrass) Der Befehl "library" ist entweder falsch geschrieben oder konnte nicht gefunden werden. (Thu Apr 18 19:59:40 2024) Command ended with non-zero return code 1 (0 sec) Kind regards Sibylle From: Veronica Andreo Sent: Thursday, April 18, 2024 7:56 PM To: Micha Silver Cc: sibylle.stoec...@gmx.ch; grass-user@lists.osgeo.org Subject: Re: [GRASS-user] Using RStudio in a GRASS GIS session Hello Sibylle, Perhaps you can tell us some details about your operative system, which GRASS installer you are using (i.e., standalone or OSGeo4W), how did you start GRASS, if R and RStudio are installed. >From your email, I do not understand why GRASS is not recognized as a command, >as it seems you **are** already within a GRASS session on the terminal? (i.e. >you have a GRASS prompt there `GRASS>`). Vero El jue, 18 abr 2024 a las 12:06, Micha Silver via grass-user (mailto:grass-user@lists.osgeo.org> >) escribió: Silly question, do you have the 'rgrass' library installed? i.e. can you do `library(rgrass)` at the R command prompt (without rstudio)? On 17/04/2024 21:34, sibylle via grass-user wrote: Dear community To use RStudio in a GRASS GIS session I used the command line GRASS> rstudio & library(rgrass) (see https://grasswiki.osgeo.org/wiki/R_statistics/rgrass) Unfortunately I was not able to solve the error message: - The command "GRASS" is either misspelled or could not be found. - The command "library" is either misspelled or could not be found. Kind regards Sibylle (Wed Apr 17 20:25:17 2024) GRASS> rstudio & Der Befehl "GRASS" ist entweder falsch geschrieben oder konnte nicht gefunden werden. (Wed Apr 17 20:25:17 2024) Command ended with non-zero return code 1 (0 sec) (Wed Apr 17 20:25:29 2024) library(rgrass) Der Befehl "library" ist entweder falsch geschrieben oder konnte nicht gefunden werden. (Wed Apr 17 20:25:29 2024) Command ended with non-zero return code 1 (0 sec) ___ grass-user mailing list grass-user@lists.osgeo.org <mailto:grass-user@lists.osgeo.org> https://lists.osgeo.org/mailman/listinfo/grass-user -- Micha Silver Ben Gurion Univ. Sde Boker, Remote Sensing Lab cell: +972-523-665918 ___ grass-user mailing list grass-user@lists.osgeo.org <mailto:grass-user@lists.osgeo.org> https://lists.osgeo.org/mailman/listinfo/grass-user -- Dra. Verónica Andreo Investigadora Adjunta de CONICET Instituto Gulich (CONAE - UNC) Centro Espacial Teófilo Tabanera (CETT) Falda del Cañete - Córdoba, Argentina +54 3547 40 int. 1153 https://veroandreo.gitlab.io/ ___ grass-user mailing list grass-user@lists.osgeo.org https://lists.osgeo.org/mailman/listinfo/grass-user
[GRASS-user] Using RStudio in a GRASS GIS session
Dear community To use RStudio in a GRASS GIS session I used the command line GRASS> rstudio & library(rgrass) (see https://grasswiki.osgeo.org/wiki/R_statistics/rgrass) Unfortunately I was not able to solve the error message: - The command "GRASS" is either misspelled or could not be found. - The command "library" is either misspelled or could not be found. Kind regards Sibylle (Wed Apr 17 20:25:17 2024) GRASS> rstudio & Der Befehl "GRASS" ist entweder falsch geschrieben oder konnte nicht gefunden werden. (Wed Apr 17 20:25:17 2024) Command ended with non-zero return code 1 (0 sec) (Wed Apr 17 20:25:29 2024) library(rgrass) Der Befehl "library" ist entweder falsch geschrieben oder konnte nicht gefunden werden. (Wed Apr 17 20:25:29 2024) Command ended with non-zero return code 1 (0 sec) ___ grass-user mailing list grass-user@lists.osgeo.org https://lists.osgeo.org/mailman/listinfo/grass-user
[GRASS-user] unable to open database sqlite
Dear community I am new to GRASS GIS and I got the following error: r.boxplot -o input=Bombus_test@PERMANENT > Note, you need to close the figure to finish the script Reducing number of bins from 100 to 132480 Computing histogram Computing bins Binning data Sorting bins Computing quantiles WARNING: Unable to open database by driver ERROR: Unable to open database <$GISDBASE/$LOCATION_NAME/$MAPSET/sqlite/sqlite.db> by driver WARNING: Unable to open database by driver WARNING: Unable open database by driver WARNING: Unable to find table linked to vector map Traceback (most recent call last): However, when going to that directory, the location produced before (Switzerland2) is there: C:\Users\Sibylle Stöckli\grassdata\Switzerland2\PERMANENT Kind regards Sibylle ___ grass-user mailing list grass-user@lists.osgeo.org https://lists.osgeo.org/mailman/listinfo/grass-user
