Re: [gmx-users] Problem compiling Gromacs 5.1

2015-08-20 Thread
Thanks, Peter. 
But , I mean I don’t know what line I should change to from line 52 of 
cmake/FindPhinx.cmake to solve this error.

Leucer

2015/08/20 16:02、Kroon, P.C. p.c.kr...@rug.nl のメール:

 Just use your favourite text editor.
 
 Peter
 
 On Thu, Aug 20, 2015 at 3:10 AM, atsutoshi0...@gmail.com wrote:
 
 Line 52 of cmake/FindSphinx.cmake file is written below.
 string(REGEX REPLACE Sphinx \\([^)]*\\) ([^ ]+) \\1
 SPHINX_EXECUTABLE_VERSION ${SPHINX_VERSION_OUTPUT_VARIABLE})
 
 Can you tell me how I can change the line?
 
 Bests,
 Leucer
 
 
 2015/08/19 23:11、Mark Abraham mark.j.abra...@gmail.com のメッセージ:
 
 Hi,
 On Wed, Aug 19, 2015 at 3:49 PM 岡部篤俊 atsutoshi0...@gmail.com wrote:
 
 Hi,
 
 I am unable to  compile Gromamcs 5.1 using the following cmake command.
 cmake .. -DGMX_FFT_LIBRARY=fftpack
 -DCMAKE_INSTALL_PREFIX=gromacs/gromacs-5.1 -DGMX_DOUBLE=off
 -DGMX_THREAD_MPI=off -DGMX_MPI=on -DGMX_CPU_ACCELERATION=SSE4.1
 
 
 Unrelated, but you now need to use -DGMX_SIMD=SSE4.1 to have the same
 effect.
 
 
 -DGMX_USE_RDTSCP=off
 
 Then I got the error message.
 Boost = 1.44 not found. Using minimal internal version. This may cause
 trouble if you plan on compiling/linking other software that uses Boost
 against GROMACS.
 CMake Error at cmake/FindSphinx.cmake:52 (string):
 string sub-command REGEX, mode REPLACE needs at least 6 arguments total
 to
 command.
 Call Stack (most recent call first):
 docs/CMakeLists.txt:62 (find_package)
 
 Could you advice what could be causing this error?
 
 We try to find Sphinx in case people want to build the new documentation,
 but it looks like some part of the detection isn't reliable enough. Can
 you
 please try changing line 52 of cmake/FindSphinx.cmake to read
 
   string(REGEX REPLACE Sphinx \\([^)]*\\) ([^ ]+) \\1
 SPHINX_EXECUTABLE_VERSION ${SPHINX_VERSION_OUTPUT_VARIABLE})
 
 and let us know how you go?
 
 Mark
 
 I was able to compile Gromacs 5.0 using same cmake command….
 
 Bests,
 Leucer
 --
 Gromacs Users mailing list
 
 * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!
 
 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a mail to gmx-users-requ...@gromacs.org.
 --
 Gromacs Users mailing list
 
 * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!
 
 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a mail to gmx-users-requ...@gromacs.org.
 --
 Gromacs Users mailing list
 
 * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!
 
 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a mail to gmx-users-requ...@gromacs.org.
 
 -- 
 Gromacs Users mailing list
 
 * Please search the archive at 
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
 
 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a 
 mail to gmx-users-requ...@gromacs.org.

-- 
Gromacs Users mailing list

* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a 
mail to gmx-users-requ...@gromacs.org.

[gmx-users] Problem compiling Gromacs 5.1

2015-08-19 Thread
Hi,

I am unable to  compile Gromamcs 5.1 using the following cmake command.
cmake .. -DGMX_FFT_LIBRARY=fftpack -DCMAKE_INSTALL_PREFIX=gromacs/gromacs-5.1 
-DGMX_DOUBLE=off -DGMX_THREAD_MPI=off -DGMX_MPI=on 
-DGMX_CPU_ACCELERATION=SSE4.1 -DGMX_USE_RDTSCP=off

Then I got the error message.
Boost = 1.44 not found. Using minimal internal version. This may cause trouble 
if you plan on compiling/linking other software that uses Boost against GROMACS.
CMake Error at cmake/FindSphinx.cmake:52 (string):
  string sub-command REGEX, mode REPLACE needs at least 6 arguments total to
  command.
Call Stack (most recent call first):
  docs/CMakeLists.txt:62 (find_package)

Could you advice what could be causing this error?
I was able to compile Gromacs 5.0 using same cmake command….

Bests,
Leucer 
-- 
Gromacs Users mailing list

* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a 
mail to gmx-users-requ...@gromacs.org.