[gmx-users] Gromacs 5.0 download

2014-07-02 Thread Harshkumar Singh
I know this is a silly question but in the downloads section when I click
to download it the new window opens and 0bit tar file is downloaded.I
switched to windows but even then the new tab doesn't show anything.I don't
understand why is this happening.
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Re: [gmx-users] Gromacs 5.0 download

2014-07-02 Thread Szilárd Páll
The link is correct, something must be broken on your side. Try using e.g. wget:

$ wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz  ls -l gromacs*.gz
--2014-07-02 22:34:44--  ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz
   = `gromacs-5.0.tar.gz'
Resolving ftp.gromacs.org... 130.238.41.205
Connecting to ftp.gromacs.org|130.238.41.205|:21... connected.
Logging in as anonymous ... Logged in!
== SYST ... done.== PWD ... done.
== TYPE I ... done.  == CWD (1) /pub/gromacs ... done.
== SIZE gromacs-5.0.tar.gz ... 26862408
== PASV ... done.== RETR gromacs-5.0.tar.gz ... done.
Length: 26862408 (26M) (unauthoritative)

100%[]
26,862,408  28.6M/s   in 0.9s

2014-07-02 22:34:45 (28.6 MB/s) - `gromacs-5.0.tar.gz' saved [26862408]

Cheers,
--
Szilárd


On Wed, Jul 2, 2014 at 8:48 PM, Harshkumar Singh
harshsingh2...@gmail.com wrote:
 I know this is a silly question but in the downloads section when I click
 to download it the new window opens and 0bit tar file is downloaded.I
 switched to windows but even then the new tab doesn't show anything.I don't
 understand why is this happening.
 --
 Gromacs Users mailing list

 * Please search the archive at 
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a 
 mail to gmx-users-requ...@gromacs.org.
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Re: [gmx-users] Gromacs 5.0 download

2014-07-02 Thread Roland Schulz
Maybe something on your end is blocking ftp connections. You can download
from a mirror such as:
http://fossies.org/linux/privat/gromacs-5.0.tar.gz
If you download from a mirror make sure to check the md5sum.


On Wed, Jul 2, 2014 at 4:36 PM, Szilárd Páll pall.szil...@gmail.com wrote:

 The link is correct, something must be broken on your side. Try using e.g.
 wget:

 $ wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz  ls -l
 gromacs*.gz
 --2014-07-02 22:34:44--
 ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz
= `gromacs-5.0.tar.gz'
 Resolving ftp.gromacs.org... 130.238.41.205
 Connecting to ftp.gromacs.org|130.238.41.205|:21... connected.
 Logging in as anonymous ... Logged in!
 == SYST ... done.== PWD ... done.
 == TYPE I ... done.  == CWD (1) /pub/gromacs ... done.
 == SIZE gromacs-5.0.tar.gz ... 26862408
 == PASV ... done.== RETR gromacs-5.0.tar.gz ... done.
 Length: 26862408 (26M) (unauthoritative)

 100%[]
 26,862,408  28.6M/s   in 0.9s

 2014-07-02 22:34:45 (28.6 MB/s) - `gromacs-5.0.tar.gz' saved [26862408]

 Cheers,
 --
 Szilárd


 On Wed, Jul 2, 2014 at 8:48 PM, Harshkumar Singh
 harshsingh2...@gmail.com wrote:
  I know this is a silly question but in the downloads section when I click
  to download it the new window opens and 0bit tar file is downloaded.I
  switched to windows but even then the new tab doesn't show anything.I
 don't
  understand why is this happening.
  --
  Gromacs Users mailing list
 
  * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!
 
  * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
  * For (un)subscribe requests visit
  https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a mail to gmx-users-requ...@gromacs.org.
 --
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 send a mail to gmx-users-requ...@gromacs.org.




-- 
ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
865-241-1537, ORNL PO BOX 2008 MS6309
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Re: [gmx-users] Gromacs 5.0 download

2014-07-02 Thread Harshkumar Singh
Yeah apparently the ftp connection is blocked.I actually forgot that.Thanks
for the help.


On Thu, Jul 3, 2014 at 2:16 AM, Roland Schulz rol...@utk.edu wrote:

 Maybe something on your end is blocking ftp connections. You can download
 from a mirror such as:
 http://fossies.org/linux/privat/gromacs-5.0.tar.gz
 If you download from a mirror make sure to check the md5sum.


 On Wed, Jul 2, 2014 at 4:36 PM, Szilárd Páll pall.szil...@gmail.com
 wrote:

  The link is correct, something must be broken on your side. Try using
 e.g.
  wget:
 
  $ wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz  ls -l
  gromacs*.gz
  --2014-07-02 22:34:44--
  ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz
 = `gromacs-5.0.tar.gz'
  Resolving ftp.gromacs.org... 130.238.41.205
  Connecting to ftp.gromacs.org|130.238.41.205|:21... connected.
  Logging in as anonymous ... Logged in!
  == SYST ... done.== PWD ... done.
  == TYPE I ... done.  == CWD (1) /pub/gromacs ... done.
  == SIZE gromacs-5.0.tar.gz ... 26862408
  == PASV ... done.== RETR gromacs-5.0.tar.gz ... done.
  Length: 26862408 (26M) (unauthoritative)
 
 
 100%[]
  26,862,408  28.6M/s   in 0.9s
 
  2014-07-02 22:34:45 (28.6 MB/s) - `gromacs-5.0.tar.gz' saved [26862408]
 
  Cheers,
  --
  Szilárd
 
 
  On Wed, Jul 2, 2014 at 8:48 PM, Harshkumar Singh
  harshsingh2...@gmail.com wrote:
   I know this is a silly question but in the downloads section when I
 click
   to download it the new window opens and 0bit tar file is downloaded.I
   switched to windows but even then the new tab doesn't show anything.I
  don't
   understand why is this happening.
   --
   Gromacs Users mailing list
  
   * Please search the archive at
  http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
  posting!
  
   * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
  
   * For (un)subscribe requests visit
   https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
  send a mail to gmx-users-requ...@gromacs.org.
  --
  Gromacs Users mailing list
 
  * Please search the archive at
  http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
  posting!
 
  * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
  * For (un)subscribe requests visit
  https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
  send a mail to gmx-users-requ...@gromacs.org.
 



 --
 ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
 865-241-1537, ORNL PO BOX 2008 MS6309
 --
 Gromacs Users mailing list

 * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!

 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a mail to gmx-users-requ...@gromacs.org.




-- 
Harshkumar Singh
2nd Year Integrated MSc Chemistry
IIT Bombay.
-- 
Gromacs Users mailing list

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Re: [gmx-users] Gromacs 5.0 download

2014-07-02 Thread Justin Lemkul



On 7/2/14, 4:36 PM, Szilárd Páll wrote:

The link is correct, something must be broken on your side. Try using e.g. wget:

$ wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz  ls -l gromacs*.gz
--2014-07-02 22:34:44--  ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz
= `gromacs-5.0.tar.gz'
Resolving ftp.gromacs.org... 130.238.41.205
Connecting to ftp.gromacs.org|130.238.41.205|:21... connected.
Logging in as anonymous ... Logged in!
== SYST ... done.== PWD ... done.
== TYPE I ... done.  == CWD (1) /pub/gromacs ... done.
== SIZE gromacs-5.0.tar.gz ... 26862408
== PASV ... done.== RETR gromacs-5.0.tar.gz ... done.
Length: 26862408 (26M) (unauthoritative)

100%[]
26,862,408  28.6M/s   in 0.9s



I'm having a similar problem as the OP.  The web interface just seems to hang 
and using wget takes over an hour with a download rate of  4 KB/sec.  This is 
true at work (hardwired workstation) and at home (laptop on wifi)


-Justin


2014-07-02 22:34:45 (28.6 MB/s) - `gromacs-5.0.tar.gz' saved [26862408]

Cheers,
--
Szilárd


On Wed, Jul 2, 2014 at 8:48 PM, Harshkumar Singh
harshsingh2...@gmail.com wrote:

I know this is a silly question but in the downloads section when I click
to download it the new window opens and 0bit tar file is downloaded.I
switched to windows but even then the new tab doesn't show anything.I don't
understand why is this happening.
--
Gromacs Users mailing list

* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a 
mail to gmx-users-requ...@gromacs.org.


--
==

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==
--
Gromacs Users mailing list

* Please search the archive at 
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mail to gmx-users-requ...@gromacs.org.


Re: [gmx-users] Gromacs 5.0 download

2014-07-02 Thread Szilárd Páll
On Wed, Jul 2, 2014 at 11:08 PM, Justin Lemkul jalem...@vt.edu wrote:


 On 7/2/14, 4:36 PM, Szilárd Páll wrote:

 The link is correct, something must be broken on your side. Try using e.g.
 wget:

 $ wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz  ls -l
 gromacs*.gz
 --2014-07-02 22:34:44--
 ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz
 = `gromacs-5.0.tar.gz'
 Resolving ftp.gromacs.org... 130.238.41.205
 Connecting to ftp.gromacs.org|130.238.41.205|:21... connected.
 Logging in as anonymous ... Logged in!
 == SYST ... done.== PWD ... done.
 == TYPE I ... done.  == CWD (1) /pub/gromacs ... done.
 == SIZE gromacs-5.0.tar.gz ... 26862408
 == PASV ... done.== RETR gromacs-5.0.tar.gz ... done.
 Length: 26862408 (26M) (unauthoritative)


 100%[]
 26,862,408  28.6M/s   in 0.9s


 I'm having a similar problem as the OP.  The web interface just seems to
 hang and using wget takes over an hour with a download rate of  4 KB/sec.
 This is true at work (hardwired workstation) and at home (laptop on wifi)

OK, that's alarming. Perhaps uu.se (which hosts ftp.gromacs.org) got
hit hard by the downloads and they throttle (some) connections. Note
mine, though, as you can see I got a 28.6 M/s average download speed
(but that's of course an unfair comparison).

Not sure how to check whether the downloads are really being
throttled, but perhaps we should use an alternative host or torrent.

 -Justin


 2014-07-02 22:34:45 (28.6 MB/s) - `gromacs-5.0.tar.gz' saved [26862408]

 Cheers,
 --
 Szilárd


 On Wed, Jul 2, 2014 at 8:48 PM, Harshkumar Singh
 harshsingh2...@gmail.com wrote:

 I know this is a silly question but in the downloads section when I click
 to download it the new window opens and 0bit tar file is downloaded.I
 switched to windows but even then the new tab doesn't show anything.I
 don't
 understand why is this happening.
 --
 Gromacs Users mailing list

 * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a mail to gmx-users-requ...@gromacs.org.


 --
 ==

 Justin A. Lemkul, Ph.D.
 Ruth L. Kirschstein NRSA Postdoctoral Fellow

 Department of Pharmaceutical Sciences
 School of Pharmacy
 Health Sciences Facility II, Room 601
 University of Maryland, Baltimore
 20 Penn St.
 Baltimore, MD 21201

 jalem...@outerbanks.umaryland.edu | (410) 706-7441
 http://mackerell.umaryland.edu/~jalemkul

 ==

 --
 Gromacs Users mailing list

 * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

 * For (un)subscribe requests visit
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 mail to gmx-users-requ...@gromacs.org.
-- 
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mail to gmx-users-requ...@gromacs.org.


Re: [gmx-users] Gromacs 5.0 download

2014-07-02 Thread Harshkumar Singh
I ran the md5sum but it does not match with any of the hashes.What should I
do now?


On Wed, Jul 2, 2014 at 5:55 PM, Szilárd Páll pall.szil...@gmail.com wrote:

 On Wed, Jul 2, 2014 at 11:08 PM, Justin Lemkul jalem...@vt.edu wrote:
 
 
  On 7/2/14, 4:36 PM, Szilárd Páll wrote:
 
  The link is correct, something must be broken on your side. Try using
 e.g.
  wget:
 
  $ wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz  ls -l
  gromacs*.gz
  --2014-07-02 22:34:44--
  ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz
  = `gromacs-5.0.tar.gz'
  Resolving ftp.gromacs.org... 130.238.41.205
  Connecting to ftp.gromacs.org|130.238.41.205|:21... connected.
  Logging in as anonymous ... Logged in!
  == SYST ... done.== PWD ... done.
  == TYPE I ... done.  == CWD (1) /pub/gromacs ... done.
  == SIZE gromacs-5.0.tar.gz ... 26862408
  == PASV ... done.== RETR gromacs-5.0.tar.gz ... done.
  Length: 26862408 (26M) (unauthoritative)
 
 
 
 100%[]
  26,862,408  28.6M/s   in 0.9s
 
 
  I'm having a similar problem as the OP.  The web interface just seems to
  hang and using wget takes over an hour with a download rate of  4
 KB/sec.
  This is true at work (hardwired workstation) and at home (laptop on wifi)

 OK, that's alarming. Perhaps uu.se (which hosts ftp.gromacs.org) got
 hit hard by the downloads and they throttle (some) connections. Note
 mine, though, as you can see I got a 28.6 M/s average download speed
 (but that's of course an unfair comparison).

 Not sure how to check whether the downloads are really being
 throttled, but perhaps we should use an alternative host or torrent.

  -Justin
 
 
  2014-07-02 22:34:45 (28.6 MB/s) - `gromacs-5.0.tar.gz' saved [26862408]
 
  Cheers,
  --
  Szilárd
 
 
  On Wed, Jul 2, 2014 at 8:48 PM, Harshkumar Singh
  harshsingh2...@gmail.com wrote:
 
  I know this is a silly question but in the downloads section when I
 click
  to download it the new window opens and 0bit tar file is downloaded.I
  switched to windows but even then the new tab doesn't show anything.I
  don't
  understand why is this happening.
  --
  Gromacs Users mailing list
 
  * Please search the archive at
  http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!
 
  * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
  * For (un)subscribe requests visit
  https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
  send a mail to gmx-users-requ...@gromacs.org.
 
 
  --
  ==
 
  Justin A. Lemkul, Ph.D.
  Ruth L. Kirschstein NRSA Postdoctoral Fellow
 
  Department of Pharmaceutical Sciences
  School of Pharmacy
  Health Sciences Facility II, Room 601
  University of Maryland, Baltimore
  20 Penn St.
  Baltimore, MD 21201
 
  jalem...@outerbanks.umaryland.edu | (410) 706-7441
  http://mackerell.umaryland.edu/~jalemkul
 
  ==
 
  --
  Gromacs Users mailing list
 
  * Please search the archive at
  http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!
 
  * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
 
  * For (un)subscribe requests visit
  https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a
  mail to gmx-users-requ...@gromacs.org.
 --
 Gromacs Users mailing list

 * Please search the archive at
 http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
 posting!

 * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

 * For (un)subscribe requests visit
 https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
 send a mail to gmx-users-requ...@gromacs.org.




-- 
Harshkumar Singh
2nd Year Integrated MSc Chemistry
IIT Bombay.
-- 
Gromacs Users mailing list

* Please search the archive at 
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Re: [gmx-users] Gromacs 5.0 download

2014-07-02 Thread Roland Schulz
On Wed, Jul 2, 2014 at 6:55 PM, Harshkumar Singh harshsingh2...@gmail.com
wrote:

 I ran the md5sum but it does not match with any of the hashes.What should I
 do now?


Which file from which server (/which URL) did you download? What md5 did
you get?

Roland




 On Wed, Jul 2, 2014 at 5:55 PM, Szilárd Páll pall.szil...@gmail.com
 wrote:

  On Wed, Jul 2, 2014 at 11:08 PM, Justin Lemkul jalem...@vt.edu wrote:
  
  
   On 7/2/14, 4:36 PM, Szilárd Páll wrote:
  
   The link is correct, something must be broken on your side. Try using
  e.g.
   wget:
  
   $ wget ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz  ls -l
   gromacs*.gz
   --2014-07-02 22:34:44--
   ftp://ftp.gromacs.org/pub/gromacs/gromacs-5.0.tar.gz
   = `gromacs-5.0.tar.gz'
   Resolving ftp.gromacs.org... 130.238.41.205
   Connecting to ftp.gromacs.org|130.238.41.205|:21... connected.
   Logging in as anonymous ... Logged in!
   == SYST ... done.== PWD ... done.
   == TYPE I ... done.  == CWD (1) /pub/gromacs ... done.
   == SIZE gromacs-5.0.tar.gz ... 26862408
   == PASV ... done.== RETR gromacs-5.0.tar.gz ... done.
   Length: 26862408 (26M) (unauthoritative)
  
  
  
 
 100%[]
   26,862,408  28.6M/s   in 0.9s
  
  
   I'm having a similar problem as the OP.  The web interface just seems
 to
   hang and using wget takes over an hour with a download rate of  4
  KB/sec.
   This is true at work (hardwired workstation) and at home (laptop on
 wifi)
 
  OK, that's alarming. Perhaps uu.se (which hosts ftp.gromacs.org) got
  hit hard by the downloads and they throttle (some) connections. Note
  mine, though, as you can see I got a 28.6 M/s average download speed
  (but that's of course an unfair comparison).
 
  Not sure how to check whether the downloads are really being
  throttled, but perhaps we should use an alternative host or torrent.
 
   -Justin
  
  
   2014-07-02 22:34:45 (28.6 MB/s) - `gromacs-5.0.tar.gz' saved
 [26862408]
  
   Cheers,
   --
   Szilárd
  
  
   On Wed, Jul 2, 2014 at 8:48 PM, Harshkumar Singh
   harshsingh2...@gmail.com wrote:
  
   I know this is a silly question but in the downloads section when I
  click
   to download it the new window opens and 0bit tar file is downloaded.I
   switched to windows but even then the new tab doesn't show anything.I
   don't
   understand why is this happening.
   --
   Gromacs Users mailing list
  
   * Please search the archive at
   http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
  posting!
  
   * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
  
   * For (un)subscribe requests visit
   https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users
 or
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 IIT Bombay.
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