On 2/14/17 3:37 AM, Мижээ Батсайхан wrote:
Dear gmx users,
I got following note. Please advice me? I checked all topologies in my
system, but I could not find floating point.
NOTE 1 [file topol.top, line 36]:
System has non-zero total charge: -14.97
Total charge should normally be an integer. See
http://www.gromacs.org/Documentation/Floating_Point_Arithmetic
for discussion on how close it should be to an integer.
This is the textbook example of what that page describes. The total charge is
the sum of a large number of floating-point values. So there is a small
rounding error. Your system clearly has a net charge of -15.
-Justin
--
==
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul
==
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