Dear gromacs users,
I have run a MD of 2 short peptides respectively, I want to compare the
flexibility between these two peptides along the full sequence via the
per-residue RMSF.
I wonder that should I use "nofit" of "fit" option when I calculate the
per-residue RMSF of a trajectory using gmx rmsf ? What is the difference
between using "fit" and "nofit" option?
Best regards,
Ouyang
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