Re: [gmx-users] Repeat Simulation n times

2019-07-08 Thread Justin Lemkul




On 7/8/19 1:43 PM, Neena Susan Eappen wrote:

Hello gromacs users,

To repeat a simulation say 50 times, do I manually start from minimization step 
to data collection 50 times, or is there anything I can write in the command 
line?


To run 50 independent simulations, I would run minimization once and 
start from 50 new equilibration runs, each with a different set of 
initial velocities (change gen_seed or simply set to -1).


That approach may not be as robust as starting from 50 different 
configurations, but the exact approach depends on the system in question.


-Justin

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[gmx-users] Repeat Simulation n times

2019-07-08 Thread Neena Susan Eappen
Hello gromacs users,

To repeat a simulation say 50 times, do I manually start from minimization step 
to data collection 50 times, or is there anything I can write in the command 
line?

Thank you,
Neena
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