Re: [gmx-users] add Mn in itp file
Hi, have look here in the supp mat. of this paper: http://onlinelibrary.wiley.com/doi/10.1002/anie.201202032/abstract Mn2+ for OPLS ff in case you needed it best and On 22/10/2014 16:13, Justin Lemkul wrote: On 10/22/14 5:09 AM, yaser wrote: hi i tried add Mn in .itp file but its need some information such as sigma and epsilon and i search for find this but i cant find this parameters .anyone knows any things about how can i add Mn in .itp file and if you know any tutorials articles about add ions . Parameters compatible with the AMBER force fields (and the associated reference) can be found at http://www.pharmacy.manchester.ac.uk/bryce/amber. -Justin -- --- Andrea Spitaleri PhD Principal Investigator AIRC D3 - Drug Discovery Development Istituto Italiano di Tecnologia Via Morego, 30 16163 Genova cell: +39 3485188790 http://www.iit.it/en/d3-people/andrea-spitaleri.html ORCID: http://orcid.org/-0003-3012-3557 -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
[gmx-users] add Mn in itp file
hi i tried add Mn in .itp file but its need some information such as sigma and epsilon and i search for find this but i cant find this parameters .anyone knows any things about how can i add Mn in .itp file and if you know any tutorials articles about add ions . thanke you. Sent from my iPhone -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
Re: [gmx-users] add Mn in itp file
On 10/22/14 5:09 AM, yaser wrote: hi i tried add Mn in .itp file but its need some information such as sigma and epsilon and i search for find this but i cant find this parameters .anyone knows any things about how can i add Mn in .itp file and if you know any tutorials articles about add ions . Parameters compatible with the AMBER force fields (and the associated reference) can be found at http://www.pharmacy.manchester.ac.uk/bryce/amber. -Justin -- == Justin A. Lemkul, Ph.D. Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 629 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 http://mackerell.umaryland.edu/~jalemkul == -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
