Hi,
what was g_membed has been integrated into mdrun, and can be used with
gmx mdrun -membed settings.dat ... Look for the membed related output of
gmx mdrun -h
Or check the documentation, e.g.
http://manual.gromacs.org/documentation/2016.3/user-guide/mdrun-features.html#running-a-membrane-protein-embedding-simulation
Best,
Carsten
> On 23 Mar 2017, at 09:51, Vytautas Rakeviius wrote:
>
> Hello,
>
> I am reading "Computational Electrophysiology: The Molecular Dynamics of Ion
> Channel Permeation and Selectivity in Atomistic Detail" (
> http://dx.doi.org/10.1016/j.bpj.2011.06.010) and it mentions tool called:
>
> g_membed
> but I can not find it on recent GROMACS 2016 versions. It was removed or
> renamed or what happened?
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--
Dr. Carsten Kutzner
Max Planck Institute for Biophysical Chemistry
Theoretical and Computational Biophysics
Am Fassberg 11, 37077 Goettingen, Germany
Tel. +49-551-2012313, Fax: +49-551-2012302
http://www.mpibpc.mpg.de/grubmueller/kutzner
http://www.mpibpc.mpg.de/grubmueller/sppexa
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