On 9/5/18 9:25 AM, milad bagheri wrote:
I'm going to examine the interaction between the two proteins using
molecular dynamics simulation by gromacs, so I downloaded pdb code 5op1
from the rcsb , which has two protein(Complex). I want to create a gap
between two protein, and then with the same coordinate Put these two
proteins in a box and run MD 100 nanoseconds, for validation this trick
compare rmsd x-ray pose and Md pose.
please help me ...
Separate the coordinates of the two proteins, translate one of them with
editconf, and concatenate the new coordinates back together.
-Justin
--
==
Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry
303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061
jalem...@vt.edu | (540) 231-3129
http://www.thelemkullab.com
==
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