04/08: gnu: r-rgooglemaps: Update to 1.4.3.
rekado pushed a commit to branch master
in repository guix.
commit 5174f06b0c3bf96dda4ed2b1d85c4e70fbce7ab2
Author: Ricardo Wurmus
Date: Fri Nov 9 19:00:05 2018 +0100
gnu: r-rgooglemaps: Update to 1.4.3.
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.3.
---
gnu/packages/geo.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 4481e21..fa2b259 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -549,14 +549,14 @@ coordinates.")
(define-public r-rgooglemaps
(package
(name "r-rgooglemaps")
- (version "1.4.2")
+ (version "1.4.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "RgoogleMaps" version))
(sha256
(base32
- "112mdm53qx92n2m4ms02sbppckp44l1z19vy99j6gw3jrdprjydl"
+ "06ab3lg1rwm93hkshf1vxfm8mlxq5qsjan0wx43lhnrysay65js4"
(properties `((upstream-name . "RgoogleMaps")))
(build-system r-build-system)
(propagated-inputs `(("r-png" ,r-png)))
02/08: gnu: r-jomo: Update to 2.6-5.
rekado pushed a commit to branch master
in repository guix.
commit fccb24501a88d10352a106d160bcf11c284144c1
Author: Ricardo Wurmus
Date: Fri Nov 9 18:59:32 2018 +0100
gnu: r-jomo: Update to 2.6-5.
* gnu/packages/cran.scm (r-jomo): Update to 2.6-5.
[propagated-inputs]: Add r-mass.
---
gnu/packages/cran.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4ecd1c6..ecead0c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2049,17 +2049,18 @@ Laplace approximation and adaptive Gauss-Hermite
quadrature.")
(define-public r-jomo
(package
(name "r-jomo")
-(version "2.6-4")
+(version "2.6-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "jomo" version))
(sha256
(base32
- "05g2rj9g7rgyb22b0gybw042nydyqsqsb31v05hifzavri8ij01x"
+ "109q5m69clrvvialxdxznd0wdb54ajhx84nj8slx8bf909a427mj"
(build-system r-build-system)
(propagated-inputs
`(("r-lme4" ,r-lme4)
+ ("r-mass" ,r-mass)
("r-ordinal" ,r-ordinal)
("r-survival" ,r-survival)))
(home-page "https://cran.r-project.org/web/packages/jomo/;)
07/08: gnu: r-biostrings: Update to 2.50.1.
rekado pushed a commit to branch master in repository guix. commit 88514b912427691272650195ad1941f7ead1ac36 Author: Ricardo Wurmus Date: Fri Nov 9 19:00:33 2018 +0100 gnu: r-biostrings: Update to 2.50.1. * gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.1. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9147a98..3b1b9c2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7657,13 +7657,13 @@ objects.") (define-public r-biostrings (package (name "r-biostrings") -(version "2.50.0") +(version "2.50.1") (source (origin (method url-fetch) (uri (bioconductor-uri "Biostrings" version)) (sha256 (base32 -"0zw0dj67fnpbz4iqnam5fxs92c1c8w8d7mzl0rkq4ksx0xl8vgg7" +"1qyv1ps7vy6gy78pm2rcikg0bgf1mv7falahjp3pkwqq1272hrl8" (properties `((upstream-name . "Biostrings"))) (build-system r-build-system)
08/08: gnu: r-ensembldb: Update to 2.6.1.
rekado pushed a commit to branch master
in repository guix.
commit 03a415365a1cfcc263f56d309f33a1a581790ca7
Author: Ricardo Wurmus
Date: Fri Nov 9 19:00:42 2018 +0100
gnu: r-ensembldb: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.1.
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3b1b9c2..5563153 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10215,14 +10215,14 @@ originally made available by Holmes, Harris, and
Quince, 2012, PLoS ONE 7(2):
(define-public r-ensembldb
(package
(name "r-ensembldb")
-(version "2.6.0")
+(version "2.6.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ensembldb" version))
(sha256
(base32
- "12jqz9h6w4mxyfr43w5qbwmacn512aw0mnl0zvhsg5i7p4qj45ks"
+ "1js05dcv1dj4g2vj7lzlg0rgjcjlk2irdr9rxqpwxmivm8nbvf36"
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
06/08: gnu: r-biocviews: Update to 1.50.5.
rekado pushed a commit to branch master in repository guix. commit 77bea84ba128ac2c7d55530d2c581021e8d16884 Author: Ricardo Wurmus Date: Fri Nov 9 19:00:23 2018 +0100 gnu: r-biocviews: Update to 1.50.5. * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.5. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8820ba0..9147a98 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7099,13 +7099,13 @@ Bioconductor, CRAN, and Github.") (define-public r-biocviews (package (name "r-biocviews") -(version "1.50.1") +(version "1.50.5") (source (origin (method url-fetch) (uri (bioconductor-uri "biocViews" version)) (sha256 (base32 -"0hjm3r58i0r9qhyar9pk250cx7sfijg0lnvi12a9s6brmmbip1a3" +"0rc1n89n04ylvy9gvsgvizcs77bh70jg1nkjjsjs7rqbr3zzdysz" (properties `((upstream-name . "biocViews"))) (build-system r-build-system)
05/08: gnu: r-sn: Update to 1.5-3.
rekado pushed a commit to branch master
in repository guix.
commit 317f5a5a9113f0e04622f75b66db432b3b0b0c04
Author: Ricardo Wurmus
Date: Fri Nov 9 19:00:14 2018 +0100
gnu: r-sn: Update to 1.5-3.
* gnu/packages/statistics.scm (r-sn): Update to 1.5-3.
---
gnu/packages/statistics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 5b494c4..f363d9a 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5325,14 +5325,14 @@ first and second order derivatives.")
(define-public r-sn
(package
(name "r-sn")
-(version "1.5-2")
+(version "1.5-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "sn" version))
(sha256
(base32
- "16gwr68zzj5v83bqfmzxnzwig3dnjrkxdhs6clri1caqkvrq6aig"
+ "10via4lg0vx9pzq350vwhz5wv1dhzxr2l3r6jq99nk37vmyvj8fc"
(build-system r-build-system)
(propagated-inputs
`(("r-mnormt" ,r-mnormt)
03/08: gnu: r-tmb: Update to 1.7.15.
rekado pushed a commit to branch master in repository guix. commit 492ec49890f020c1d4ad4eaf3e21e235b79e989d Author: Ricardo Wurmus Date: Fri Nov 9 18:59:50 2018 +0100 gnu: r-tmb: Update to 1.7.15. * gnu/packages/cran.scm (r-tmb): Update to 1.7.15. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ecead0c..45526c7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6565,14 +6565,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") -(version "1.7.14") +(version "1.7.15") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl" + "1r2d8c5iazihba42sn33yarv0dcfiy989sx64zcf14zr8k6cgjzs" (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs
branch master updated (06bc7b8 -> 03a4153)
rekado pushed a change to branch master in repository guix. from 06bc7b8 gnu: Add r-arm. new f87a18e gnu: r-rcpp: Update to 1.0.0. new fccb245 gnu: r-jomo: Update to 2.6-5. new 492ec49 gnu: r-tmb: Update to 1.7.15. new 5174f06 gnu: r-rgooglemaps: Update to 1.4.3. new 317f5a5 gnu: r-sn: Update to 1.5-3. new 77bea84 gnu: r-biocviews: Update to 1.50.5. new 88514b9 gnu: r-biostrings: Update to 2.50.1. new 03a4153 gnu: r-ensembldb: Update to 2.6.1. The 8 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: gnu/packages/bioinformatics.scm | 12 ++-- gnu/packages/cran.scm | 15 +-- gnu/packages/geo.scm| 4 ++-- gnu/packages/statistics.scm | 4 ++-- 4 files changed, 19 insertions(+), 16 deletions(-)
01/08: gnu: r-rcpp: Update to 1.0.0.
rekado pushed a commit to branch master
in repository guix.
commit f87a18e66079a540beea99fe6475fccb49a9ff68
Author: Ricardo Wurmus
Date: Fri Nov 9 18:58:47 2018 +0100
gnu: r-rcpp: Update to 1.0.0.
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.0.
[native-inputs]: Add r-knitr.
---
gnu/packages/cran.scm | 6 --
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 83d8f51..4ecd1c6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -571,14 +571,16 @@ you to rapidly iterate while developing a package.")
(define-public r-rcpp
(package
(name "r-rcpp")
-(version "0.12.19")
+(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rcpp" version))
(sha256
-(base32 "10mmiaawv9iwglc6z4y51mdpsfb1sivqmwr6xnfqkllcnpabdbk3"
+(base32 "1hlbw4k79q9ich4w27b01gsvwrsnrflii8zjlcmgfzm1vpq8ndxp"
(build-system r-build-system)
+(native-inputs
+ `(("r-knitr" ,r-knitr))) ; for vignettes
(home-page "http://www.rcpp.org;)
(synopsis "Seamless R and C++ integration")
(description
branch master updated (e911963 -> 306f576)
rekado pushed a change to branch master
in repository maintenance.
from e911963 hydra: berlin: Cache /static requests.
new 306f576 talks: Add ICG 2018 talk.
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
talks/icg-2018/Makefile|48 +
talks/icg-2018/big-graph.svg | 16667 +++
talks/icg-2018/bonus-bsseq.svg | 3222
talks/icg-2018/bonus-chipseq.svg | 1449 ++
.../bonus-functional1a.svg}|31 +-
.../bonus-functional1b.svg}| 126 +-
.../bonus-functional1c.svg}| 197 +-
talks/icg-2018/bonus-rnaseq.svg| 1871 +++
talks/icg-2018/bonus-scrnaseq.svg | 1695 ++
.../demo.svg => icg-2018/bonus.svg}|34 +-
talks/icg-2018/containers.svg | 611 +
talks/icg-2018/end.svg | 524 +
talks/icg-2018/guix-features.svg | 542 +
talks/icg-2018/guix-to-container.svg | 1181 ++
talks/icg-2018/logo.svg| 280 +
talks/icg-2018/pigx-design-1.svg | 1500 ++
talks/icg-2018/pigx-design-2.svg | 1702 ++
talks/icg-2018/pigx-design-3.svg | 1227 ++
talks/icg-2018/pigx-reproducible.svg | 2152 +++
talks/icg-2018/reproducible-0.svg | 624 +
talks/icg-2018/reproducible-1.svg | 899 +
talks/icg-2018/reproducible-2.svg | 909 +
talks/icg-2018/reproducible-3.svg | 938 ++
talks/icg-2018/reproducible-4.svg | 706 +
talks/icg-2018/slides.pdf | Bin 0 -> 1670246 bytes
talks/icg-2018/slides.pdfpc| 100 +
talks/icg-2018/smoothie.svg| 1219 ++
.../docker-3.svg => icg-2018/summary.svg} | 234 +-
talks/icg-2018/title.svg | 1600 ++
29 files changed, 42056 insertions(+), 232 deletions(-)
create mode 100644 talks/icg-2018/Makefile
create mode 100644 talks/icg-2018/big-graph.svg
create mode 100644 talks/icg-2018/bonus-bsseq.svg
create mode 100644 talks/icg-2018/bonus-chipseq.svg
copy talks/{cern-2018/functional1a.svg => icg-2018/bonus-functional1a.svg}
(96%)
copy talks/{cern-2018/functional1b.svg => icg-2018/bonus-functional1b.svg}
(89%)
copy talks/{bio-it-world-2018/functional1.svg =>
icg-2018/bonus-functional1c.svg} (85%)
create mode 100644 talks/icg-2018/bonus-rnaseq.svg
create mode 100644 talks/icg-2018/bonus-scrnaseq.svg
copy talks/{bio-it-world-2018/demo.svg => icg-2018/bonus.svg} (93%)
create mode 100644 talks/icg-2018/containers.svg
create mode 100644 talks/icg-2018/end.svg
create mode 100644 talks/icg-2018/guix-features.svg
create mode 100644 talks/icg-2018/guix-to-container.svg
create mode 100644 talks/icg-2018/logo.svg
create mode 100644 talks/icg-2018/pigx-design-1.svg
create mode 100644 talks/icg-2018/pigx-design-2.svg
create mode 100644 talks/icg-2018/pigx-design-3.svg
create mode 100644 talks/icg-2018/pigx-reproducible.svg
create mode 100644 talks/icg-2018/reproducible-0.svg
create mode 100644 talks/icg-2018/reproducible-1.svg
create mode 100644 talks/icg-2018/reproducible-2.svg
create mode 100644 talks/icg-2018/reproducible-3.svg
create mode 100644 talks/icg-2018/reproducible-4.svg
create mode 100644 talks/icg-2018/slides.pdf
create mode 100644 talks/icg-2018/slides.pdfpc
create mode 100644 talks/icg-2018/smoothie.svg
copy talks/{bio-it-world-2018/docker-3.svg => icg-2018/summary.svg} (56%)
create mode 100644 talks/icg-2018/title.svg
branch master updated (a961ae4 -> 06bc7b8)
rekado pushed a change to branch master in repository guix. from a961ae4 gnu: Add r-destiny. new f338e48 gnu: Add r-rgl. new 213e72a gnu: Add r-multicool. new 4106e6a gnu: Add r-misc3d. new da256af gnu: Add r-ks. new cf383cf gnu: Add r-feature. new 06bc7b8 gnu: Add r-arm. The 6 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: gnu/packages/cran.scm | 174 +- 1 file changed, 173 insertions(+), 1 deletion(-)
03/06: gnu: Add r-misc3d.
rekado pushed a commit to branch master in repository guix. commit 4106e6ad87cb9b4bd571bc1a91cb026719770095 Author: Ricardo Wurmus Date: Fri Nov 9 16:46:51 2018 +0100 gnu: Add r-misc3d. * gnu/packages/cran.scm (r-misc3d): New variable. --- gnu/packages/cran.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 06bdaa8..604ba95 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7443,3 +7443,23 @@ image formats, including PNG, Postscript, SVG, PGF.") or hash tables and to generate integer partitions. Cool-lex order is similar to colexicographical order.") (license license:gpl2))) + +(define-public r-misc3d + (package +(name "r-misc3d") +(version "0.8-4") +(source + (origin + (method url-fetch) + (uri (cran-uri "misc3d" version)) + (sha256 +(base32 + "0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm" +(build-system r-build-system) +(home-page "https://cran.r-project.org/web/packages/misc3d/;) +(synopsis "Miscellaneous 3D Plots") +(description + "This package provides a collection of miscellaneous 3d plots, including +isosurfaces.") +;; Any version of the GPL. +(license (list license:gpl2+ license:gpl3+
04/06: gnu: Add r-ks.
rekado pushed a commit to branch master
in repository guix.
commit da256afb9ed35bb15e7cab01a3aab76f1ec5639d
Author: Ricardo Wurmus
Date: Fri Nov 9 16:47:03 2018 +0100
gnu: Add r-ks.
* gnu/packages/cran.scm (r-ks): New variable.
---
gnu/packages/cran.scm | 32
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 604ba95..8c5c925 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7463,3 +7463,35 @@ to colexicographical order.")
isosurfaces.")
;; Any version of the GPL.
(license (list license:gpl2+ license:gpl3+
+
+(define-public r-ks
+ (package
+(name "r-ks")
+(version "1.11.3")
+(source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ks" version))
+ (sha256
+(base32
+ "0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d"
+(build-system r-build-system)
+(propagated-inputs
+ `(("r-fnn" ,r-fnn)
+ ("r-kernlab" ,r-kernlab)
+ ("r-kernsmooth" ,r-kernsmooth)
+ ("r-matrix" ,r-matrix)
+ ("r-mclust" ,r-mclust)
+ ("r-mgcv" ,r-mgcv)
+ ("r-misc3d" ,r-misc3d)
+ ("r-multicool" ,r-multicool)
+ ("r-mvtnorm" ,r-mvtnorm)))
+(home-page "http://www.mvstat.net/tduong/;)
+(synopsis "Kernel smoothing")
+(description
+ "This package provides kernel smoothers for univariate and multivariate
+data, including density functions, density derivatives, cumulative
+distributions, modal clustering, discriminant analysis, and two-sample
+hypothesis testing.")
+;; Either version of the GPL.
+(license (list license:gpl2 license:gpl3
06/06: gnu: Add r-arm.
rekado pushed a commit to branch master
in repository guix.
commit 06bc7b82f7c6cb623911867f55b58b3316d3ddfc
Author: Ricardo Wurmus
Date: Fri Nov 9 16:47:19 2018 +0100
gnu: Add r-arm.
* gnu/packages/cran.scm (r-arm): New variable.
---
gnu/packages/cran.scm | 27 +++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ef3c148..83d8f51 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7521,3 +7521,30 @@ Significant gradient and/or curvature regions often
correspond to significant
features (e.g. local modes).")
;; Either version of the GPL.
(license (list license:gpl2 license:gpl3
+
+(define-public r-arm
+ (package
+(name "r-arm")
+(version "1.10-1")
+(source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "arm" version))
+ (sha256
+(base32
+ "0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg"
+(build-system r-build-system)
+(propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-coda" ,r-coda)
+ ("r-lme4" ,r-lme4)
+ ("r-mass" ,r-mass)
+ ("r-matrix" ,r-matrix)
+ ("r-nlme" ,r-nlme)))
+(home-page "https://cran.r-project.org/web/packages/arm/;)
+(synopsis "Data analysis using regression and multilevel/hierarchical
models")
+(description
+ "This package provides functions to accompany A. Gelman and J. Hill,
+Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge
+University Press, 2007.")
+(license license:gpl3+)))
05/06: gnu: Add r-feature.
rekado pushed a commit to branch master
in repository guix.
commit cf383cf08ff1b68a9610cddf66c1851b2aeddaab
Author: Ricardo Wurmus
Date: Fri Nov 9 16:47:12 2018 +0100
gnu: Add r-feature.
* gnu/packages/cran.scm (r-feature): New variable.
---
gnu/packages/cran.scm | 26 ++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8c5c925..ef3c148 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7495,3 +7495,29 @@ distributions, modal clustering, discriminant analysis,
and two-sample
hypothesis testing.")
;; Either version of the GPL.
(license (list license:gpl2 license:gpl3
+
+(define-public r-feature
+ (package
+(name "r-feature")
+(version "1.2.13")
+(source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "feature" version))
+ (sha256
+(base32
+ "07hkw0bv38naj2hdsx4xxrm2dngi6w3rbvgr7s50bjic8hlgy1ra"
+(build-system r-build-system)
+(propagated-inputs
+ `(("r-ks" ,r-ks)
+ ("r-misc3d" ,r-misc3d)
+ ("r-rgl" ,r-rgl)))
+(home-page "http://www.mvstat.net/tduong/;)
+(synopsis "Inferential feature significance for kernel density estimation")
+(description
+ "The feature package contains functions to display and compute kernel
+density estimates, significant gradient and significant curvature regions.
+Significant gradient and/or curvature regions often correspond to significant
+features (e.g. local modes).")
+;; Either version of the GPL.
+(license (list license:gpl2 license:gpl3
02/06: gnu: Add r-multicool.
rekado pushed a commit to branch master
in repository guix.
commit 213e72a18dc20ba4ae1275e1f48104737c2a7526
Author: Ricardo Wurmus
Date: Fri Nov 9 16:46:41 2018 +0100
gnu: Add r-multicool.
* gnu/packages/cran.scm (r-multicool): New variable.
---
gnu/packages/cran.scm | 21 +
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6840a2f..06bdaa8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -7422,3 +7422,24 @@ various standard 3D file formats including WebGL, PLY,
OBJ, STL as well as 2D
image formats, including PNG, Postscript, SVG, PGF.")
;; Any version of the GPL.
(license (list license:gpl2+ license:gpl3+
+
+(define-public r-multicool
+ (package
+(name "r-multicool")
+(version "0.1-10")
+(source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "multicool" version))
+ (sha256
+(base32
+ "1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v"
+(build-system r-build-system)
+(propagated-inputs `(("r-rcpp" ,r-rcpp)))
+(home-page "https://cran.r-project.org/web/packages/multicool/;)
+(synopsis "Permutations of multisets in cool-lex order")
+(description
+ "This package provides a set of tools to permute multisets without loops
+or hash tables and to generate integer partitions. Cool-lex order is similar
+to colexicographical order.")
+(license license:gpl2)))
01/06: gnu: Add r-rgl.
rekado pushed a commit to branch master
in repository guix.
commit f338e4807f71503071da1af54b887e7f08a078da
Author: Ricardo Wurmus
Date: Fri Nov 9 16:46:29 2018 +0100
gnu: Add r-rgl.
* gnu/packages/cran.scm (r-rgl): New variable.
---
gnu/packages/cran.scm | 48 +++-
1 file changed, 47 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e22c501..6840a2f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -34,10 +34,13 @@
#:use-module (guix build-system r)
#:use-module (gnu packages base)
#:use-module (gnu packages compression)
+ #:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
+ #:use-module (gnu packages gl)
#:use-module (gnu packages gnome)
#:use-module (gnu packages gtk)
#:use-module (gnu packages haskell)
+ #:use-module (gnu packages image)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
@@ -46,7 +49,8 @@
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
#:use-module (gnu packages tls)
- #:use-module (gnu packages web))
+ #:use-module (gnu packages web)
+ #:use-module (gnu packages xorg))
(define-public r-clipr
(package
@@ -7376,3 +7380,45 @@ netCDF files.")
"This package provides a convenient tool to install and update
Bioconductor packages.")
(license license:artistic2.0)))
+
+(define-public r-rgl
+ (package
+(name "r-rgl")
+(version "0.99.16")
+(source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rgl" version))
+ (sha256
+(base32
+ "0q8sg8fr0140ilssqhscaxkjc29w1rpp6f4k50amw3zzs9g58ak9"
+(build-system r-build-system)
+(native-inputs
+ `(("pkg-config" ,pkg-config)))
+(inputs
+ `(("freetype" ,freetype)
+ ("libpng" ,libpng)
+ ("glu" ,glu)
+ ("libx11" ,libx11)
+ ("ghc-pandoc" ,ghc-pandoc)
+ ("zlib" ,zlib)))
+(propagated-inputs
+ `(("r-crosstalk" ,r-crosstalk)
+ ("r-htmltools" ,r-htmltools)
+ ("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-knitr" ,r-knitr)
+ ("r-magrittr" ,r-magrittr)
+ ("r-manipulatewidget" ,r-manipulatewidget)
+ ("r-shiny" ,r-shiny)))
+(home-page "https://r-forge.r-project.org/projects/rgl/;)
+(synopsis "3D visualization using OpenGL")
+(description
+ "This package provides medium to high level functions for 3D interactive
graphics,
+including functions modelled on base graphics (@code{plot3d()}, etc.) as well
+as functions for constructing representations of geometric
+objects (@code{cube3d()}, etc.). Output may be on screen using OpenGL, or to
+various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D
+image formats, including PNG, Postscript, SVG, PGF.")
+;; Any version of the GPL.
+(license (list license:gpl2+ license:gpl3+
branch master updated (ff939ef -> a961ae4)
rekado pushed a change to branch master in repository guix. from ff939ef gnu: Add r-h5. new a961ae4 gnu: Add r-destiny. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: gnu/packages/bioconductor.scm | 35 +++ 1 file changed, 35 insertions(+)
01/01: gnu: Add r-destiny.
rekado pushed a commit to branch master
in repository guix.
commit a961ae469cf81797df34f22eef0f0f5ca1a21e07
Author: Ricardo Wurmus
Date: Fri Nov 9 17:09:14 2018 +0100
gnu: Add r-destiny.
* gnu/packages/bioconductor.scm (r-destiny): New variable.
---
gnu/packages/bioconductor.scm | 35 +++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bc13460..95c722a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -970,6 +970,41 @@ to search for all neighbors within a given distance.
Parallelization is
achieved for all methods using the BiocParallel framework.")
(license license:gpl3)))
+(define-public r-destiny
+ (package
+(name "r-destiny")
+(version "2.12.0")
+(source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "destiny" version))
+ (sha256
+(base32
+ "1iay17mrhsfmpwl920rh1nip5b6ybva4h6bna0yld04paq5yva67"
+(build-system r-build-system)
+(propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-fnn" ,r-fnn)
+ ("r-ggthemes" ,r-ggthemes)
+ ("r-hmisc" ,r-hmisc)
+ ("r-igraph" ,r-igraph)
+ ("r-matrix" ,r-matrix)
+ ("r-proxy" ,r-proxy)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppeigen" ,r-rcppeigen)
+ ("r-scales" ,r-scales)
+ ("r-scatterplot3d" ,r-scatterplot3d)
+ ("r-smoother" ,r-smoother)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-vim" ,r-vim)))
+(home-page "https://bioconductor.org/packages/destiny/;)
+(synopsis "Create and plot diffusion maps")
+(description "This package provides tools to create and plot diffusion
+maps.")
+;; Any version of the GPL
+(license license:gpl3+)))
+
(define-public r-savr
(package
(name "r-savr")
01/01: Merge branch 'master' into core-updates
mbakke pushed a commit to branch core-updates in repository guix. commit 64461ba20a07a0cf3197de3e97cb44e0f66cebdc Merge: 55174e6 cee9ab2 Author: Marius Bakke Date: Fri Nov 9 17:02:08 2018 +0100 Merge branch 'master' into core-updates doc/guix.texi | 6 + gnu/local.mk | 2 +- gnu/packages/bioinformatics.scm| 512 ++--- gnu/packages/c.scm | 5 +- gnu/packages/cups.scm | 6 +- gnu/packages/databases.scm | 4 +- gnu/packages/emacs.scm | 75 +++ gnu/packages/gtk.scm | 27 ++ gnu/packages/guile.scm | 6 +- gnu/packages/kodi.scm | 70 ++- gnu/packages/maths.scm | 10 +- gnu/packages/music.scm | 79 ++-- .../patches/hplip-remove-imageprocessor.patch | 232 ++ .../patches/vsearch-unbundle-cityhash.patch| 6 +- ...xmaxima-do-not-use-old-gnuplot-parameters.patch | 26 -- gnu/packages/python.scm| 29 +- gnu/packages/statistics.scm| 17 +- gnu/packages/xml.scm | 38 ++ gnu/services/desktop.scm | 8 +- guix/scripts/pull.scm | 2 +- 20 files changed, 781 insertions(+), 379 deletions(-)
branch core-updates updated (55174e6 -> 64461ba)
mbakke pushed a change to branch core-updates in repository guix. from 55174e6 Merge branch 'master' into core-updates adds 497fc04 gnu: mash: Fetch sources from git. adds 5c1f35e gnu: mash: Update to 2.1. adds b58d9e4 gnu: metabat: Fetch sources from git. adds 9d94ca0 gnu: minced: Fetch sources from git. adds 6052264 gnu: minced: Update to 0.3.2. adds a2b9d6a gnu: pplacer: Fetch sources from git. adds 1a20bca gnu: r-seqgl: Fetch sources from git. adds 4257c10 gnu: kentutils: Fetch sources from git. adds 55698df gnu: libgff: Fetch sources from git. adds 2b773a9 gnu: sra-tools: Fetch sources from git. adds ea68b3f pull: Add missing monadic 'return'. adds b44b1f0 gnu: hplip: Remove bundled non-free blobs. adds 5e242b0 gnu: pyicoteo: Fetch sources from git. adds 4715d4a gnu: raxml: Fetch sources from git. adds d9ba126 gnu: python2-biom-format: Fix build. adds b9d0c35 gnu: raxml: Update to 8.2.12. adds 019fcdf gnu: seqtk: Fetch sources from git. adds 63f3255 gnu: seqtk: Update to 1.3. adds 37e285b gnu: preseq: Fetch sources from git. adds 67caa4b gnu: preseq: Update to 2.0.3. adds 273df99 gnu: vsearch: Fetch source from git. adds 6236524 gnu: sortmerna: Fetch sources from git. adds e0a8fc8 gnu: snap-aligner: Fetch sources from git. adds 7145f4e gnu: ritornello: Fetch sources from git. adds 3b88806 gnu: ritornello: Update to 2.0.1. adds f3f34b1 gnu: filevercmp: Fetch sources from git. adds e2f3638 gnu: Add spread-sheet-widget. adds ed33049 gnu: pspp: Update to 1.2.0. adds e0f1aa2 gnu: tadbit: Fetch sources from git. adds 3398dfb gnu: ncbi-vdb: Fetch sources from git. adds 6a7d9ee gnu: ncbi-vdb: Use INVOKE and end phases on #T. adds 4031e7f gnu: ngs-sdk: Fetch sources from git. adds c098c49 gnu: sailfish: Fetch sources from git. adds e438c96 gnu: fraggenescan: Use INVOKE. adds c527d36 gnu: java-picard-1.113: Use INVOKE. adds 31c41a8 gnu: vsearch: Remove custom autogen phase. adds e35dce0 gnu: mash: Remove custom autoconf phase. adds 0881d62 gnu: newick-utils: Remove custom autoconf phase. adds 1794164 gnu: muscle: Use INVOKE. adds 2e2d885 gnu: sra-tools: Use INVOKE. adds 8b685c4 gnu: taxtastic: Use INVOKE. adds e78e54d gnu: emboss: Use INVOKE. adds 3da3ced gnu: ngs-sdk: Use INVOKE. adds 8d3eaa9 gnu: ngs-sdk: Update to 2.9.3. adds 8740885 gnu: ncbi-vdb: Update to 2.9.3. adds b173334 gnu: plink-ng: Fetch sources from git. adds 15c9609 gnu: sra-tools: Update to 2.9.3. adds 86c6928 gnu: vsearch: Update to 2.9.1. adds 9f527c9 gnu: sailfish: Use INVOKE. adds a954293 gnu: seek: Use INVOKE. adds ce49fdc gnu: roary: Use INVOKE. adds a1e83a9 gnu: pplacer-scripts: Use INVOKE. adds 9c30cba gnu: pcc: Use INVOKE. adds ec618c2 gnu: cmus: Use INVOKE. adds 4e82946 gnu: cmus: Fetch sources from git. adds 9ab90ea gnu: pd: Remove custom autoconf phase. adds 69cb939 gnu: libmusicbrainz: Use INVOKE. adds 195e081 gnu: Add python-pyelftools. adds 9870b9f gnu: python-ilinkedlist: Update to 0.3.1. adds ec86863 services: elogind: Fix spelling errors of left value fields in elogind config file. adds 8fa9ace doc: Add index entries. adds 988b78b gnu: Add fstrcmp. adds e340725 gnu: kodi: Update to 18.0b5. adds 2705780 gnu: Add emacs-clang-format. adds 41d2b7f gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850]. adds e4b62e2 gnu: wxmaxima: Update to 18.10.1. adds b1b82ae gnu: powertabeditor: Use INVOKE. adds 1b12b57 gnu: powertabeditor: Fetch sources from git. adds 97f33b0 gnu: guile-newt: Update to revision 1. adds 2cce23b gnu: Add xmlrpc-c. adds ddd925f gnu: Add emacs-gtk-look. adds 2eaaadb gnu: r-with-tests: Use INVOKE. adds cee9ab2 gnu: r-with-tests: Update to 3.5.1. new 64461ba Merge branch 'master' into core-updates The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: doc/guix.texi | 6 + gnu/local.mk | 2 +- gnu/packages/bioinformatics.scm| 512 ++--- gnu/packages/c.scm | 5 +- gnu/packages/cups.scm | 6 +- gnu/packages/databases.scm | 4 +-
03/03: gnu: Add r-h5.
rekado pushed a commit to branch master
in repository guix.
commit ff939ef4d53af151683fbbae389cf60d76aef6ae
Author: Ricardo Wurmus
Date: Fri Nov 9 16:55:06 2018 +0100
gnu: Add r-h5.
* gnu/packages/cran.scm (r-h5): New variable.
---
gnu/packages/cran.scm | 31 +++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 33dda34..e22c501 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -32,6 +32,7 @@
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system r)
+ #:use-module (gnu packages base)
#:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gnome)
@@ -3472,6 +3473,36 @@ dendrograms.")
;; Either version of the license.
(license (list license:gpl2 license:gpl3
+(define-public r-h5
+ (package
+(name "r-h5")
+(version "0.9.9")
+(source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "h5" version))
+ (sha256
+(base32
+ "14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx"
+(build-system r-build-system)
+(inputs
+ `(("zlib" ,zlib)
+ ("hdf5" ,hdf5)))
+(native-inputs
+ `(("which" ,which)))
+(propagated-inputs
+ `(("r-rcpp" ,r-rcpp)))
+(home-page "https://github.com/mannau/h5;)
+(synopsis "Interface to the HDF5 Library")
+(description
+ "This package provides an S4 interface to the HDF5 library supporting
+fast storage and retrieval of R-objects like vectors, matrices and arrays to
+binary files in a language independent format. The HDF5 format can therefore
+be used as an alternative to R's save/load mechanism. Since h5 is able to
+access only subsets of stored data it can also handle data sets which do not
+fit into memory.")
+(license license:bsd-2)))
+
(define-public r-cgdsr
(package
(name "r-cgdsr")
01/03: gnu: Add r-savr.
rekado pushed a commit to branch master
in repository guix.
commit 8a587c89af55d7fa858a65fe717cfbfbe84b0e1e
Author: Ricardo Wurmus
Date: Fri Nov 9 16:45:21 2018 +0100
gnu: Add r-savr.
* gnu/packages/bioconductor.scm (r-savr): New variable.
---
gnu/packages/bioconductor.scm | 26 ++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bab6b2b..bc13460 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -969,3 +969,29 @@ using pre-clustering with the k-means algorithm.
Functions are also provided
to search for all neighbors within a given distance. Parallelization is
achieved for all methods using the BiocParallel framework.")
(license license:gpl3)))
+
+(define-public r-savr
+ (package
+(name "r-savr")
+(version "1.20.0")
+(source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "savR" version))
+ (sha256
+(base32
+ "13bwq2a2pygdkmhrcmvz525wsi5i01j911711zgs6x93wj20b2w7"
+(properties `((upstream-name . "savR")))
+(build-system r-build-system)
+(propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-reshape2" ,r-reshape2)
+ ("r-scales" ,r-scales)
+ ("r-xml" ,r-xml)))
+(home-page "https://github.com/bcalder/savR;)
+(synopsis "Parse and analyze Illumina SAV files")
+(description
+ "This package provides tools to parse Illumina Sequence Analysis
+Viewer (SAV) files, access data, and generate QC plots.")
+(license license:agpl3+)))
branch master updated (cee9ab2 -> ff939ef)
rekado pushed a change to branch master in repository guix. from cee9ab2 gnu: r-with-tests: Update to 3.5.1. new 8a587c8 gnu: Add r-savr. new 3a4c628 gnu: Add r-aggregation. new ff939ef gnu: Add r-h5. The 3 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: gnu/packages/bioconductor.scm | 26 ++ gnu/packages/cran.scm | 51 +++ 2 files changed, 77 insertions(+)
02/03: gnu: Add r-aggregation.
rekado pushed a commit to branch master in repository guix. commit 3a4c6288c81d91ce48200a310ad0d83bddfb7a5a Author: Ricardo Wurmus Date: Fri Nov 9 16:53:15 2018 +0100 gnu: Add r-aggregation. * gnu/packages/cran.scm (r-aggregation): New variable. --- gnu/packages/cran.scm | 20 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ec950ce..33dda34 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3071,6 +3071,26 @@ Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden, Cambridge University Press, 1993.") (license license:gpl2))) +(define-public r-aggregation + (package +(name "r-aggregation") +(version "1.0.1") +(source + (origin + (method url-fetch) + (uri (cran-uri "aggregation" version)) + (sha256 +(base32 + "0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46" +(build-system r-build-system) +(home-page "https://cran.r-project.org/web/packages/aggregation/;) +(synopsis "Methods for p-value aggregation") +(description + "This package contains functionality for performing the following methods +of p-value aggregation: Fisher's method, the Lancaster method (weighted +Fisher's method), and Sidak correction.") +(license license:gpl3))) + (define-public r-quantmod (package (name "r-quantmod")
02/02: gnu: r-with-tests: Update to 3.5.1.
rekado pushed a commit to branch master in repository guix. commit cee9ab244f9ba9f3156b6aa50927418bae951096 Author: Ricardo Wurmus Date: Fri Nov 9 10:47:34 2018 +0100 gnu: r-with-tests: Update to 3.5.1. * gnu/packages/statistics.scm (r-with-tests): Update to 3.5.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e76bc7c..5b494c4 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -121,7 +121,7 @@ be output in text, PostScript, PDF or HTML.") (define r-with-tests (package (name "r-with-tests") -(version "3.5.0") +(version "3.5.1") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -129,7 +129,7 @@ be output in text, PostScript, PDF or HTML.") version ".tar.gz")) (sha256 (base32 -"0w38865laqg28cdhikxdxhx4rfp0kgcn72gakwypsy91br9ja5zx" +"1vap2k8kj5icy9naw61f9zyphf4rs0c9rxvil0zxkwx0xvsvyqq4" (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests)
branch master updated (ddd925f -> cee9ab2)
rekado pushed a change to branch master in repository guix. from ddd925f gnu: Add emacs-gtk-look. new 2eaaadb gnu: r-with-tests: Use INVOKE. new cee9ab2 gnu: r-with-tests: Update to 3.5.1. The 2 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: gnu/packages/statistics.scm | 8 1 file changed, 4 insertions(+), 4 deletions(-)
01/02: gnu: r-with-tests: Use INVOKE.
rekado pushed a commit to branch master
in repository guix.
commit 2eaaadb4d6793d7f39ab0025acdffc135cc0
Author: Ricardo Wurmus
Date: Fri Nov 9 10:47:05 2018 +0100
gnu: r-with-tests: Use INVOKE.
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Use INVOKE and
return #T unconditionally.
---
gnu/packages/statistics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 642fa2d..e76bc7c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -218,9 +218,9 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\
"/share/zoneinfo"))
#t))
(add-after 'build 'make-info
- (lambda _ (zero? (system* "make" "info"
+ (lambda _ (invoke "make" "info") #t))
(add-after 'build 'install-info
- (lambda _ (zero? (system* "make" "install-info")
+ (lambda _ (invoke "make" "install-info") #t)))
#:configure-flags
`(;; We build the recommended packages here, because they are needed in
;; order to run the test suite. We disable them in the r-minimal
02/02: gnu: Add emacs-gtk-look.
ambrevar pushed a commit to branch master
in repository guix.
commit ddd925f608bf7bf9af367447ef937e92d531a941
Author: Pierre Neidhardt
Date: Fri Nov 9 11:32:25 2018 +0100
gnu: Add emacs-gtk-look.
* gnu/packages/emacs.scm (emacs-gtk-look): New variable.
---
gnu/packages/emacs.scm | 38 ++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index 3c7d902..c6008e6 100644
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@ -12500,3 +12500,41 @@ fix its formatting. @command{clang-format} is a tool
that formats C/C++/Obj-C
code according to a set of style options, see
@url{http://clang.llvm.org/docs/ClangFormatStyleOptions.html}.;)
(license license:gpl3+
+
+(define-public emacs-gtk-look
+ (package
+(name "emacs-gtk-look")
+(version "29")
+(source (origin
+ (method url-fetch)
+ (uri "https://download.tuxfamily.org/user42/gtk-look.el;)
+ (sha256
+ (base32
+"14p2nwrd51cr1v06fxbjjn6jdrkf9d6vcxhmscm0kl677s25ypsp"
+(build-system emacs-build-system)
+(arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'configure
+ (lambda _
+ ;; File is read-only.
+ (chmod "gtk-look.el" #o644)
+ (emacs-substitute-variables "gtk-look.el"
+ ("gtk-lookup-devhelp-indices"
+'(list (expand-file-name
"~/.guix-profile/share/gtk-doc/html/*/*.devhelp*"
+ #t)
+(home-page "http://user42.tuxfamily.org/gtk-look/index.html;)
+(synopsis "Find and display HTML documentation for GTK, GNOME and Glib")
+(description "@command{gtk-look} finds and displays HTML documentation for
+GTK, GNOME and Glib functions and variables in Emacs, similar to what
+info-lookup-symbol does for info files (C-h S). The documentation is expected
+to be devhelp indexes with HTML files. The location of the indexes can be
+customized. In addition to C code development @command{gtk-look} is good for
+
+@itemize
+@item @command{perl-gtk2}, recognising class funcs like
+@command{Gtk2::Label->new} and bare method names like @command{set_text}.
+@item @command{guile-gnome}, recognising methods like @command{set-text} and
+classes like @command{}.
+@end itemize\n")
+(license license:gpl3+)))
01/02: gnu: Add xmlrpc-c.
ambrevar pushed a commit to branch master
in repository guix.
commit 2cce23bfb8fbb57c3f11780a939d74b5bd9ed3a2
Author: Pierre Neidhardt
Date: Fri Nov 9 11:31:17 2018 +0100
gnu: Add xmlrpc-c.
* gnu/packages/xml.scm (xmlrpc-c): New variable.
---
gnu/packages/xml.scm | 38 ++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index c1f14d7..347ac87 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -19,6 +19,7 @@
;;; Copyright © 2017 Alex Vong
;;; Copyright © 2017 Petter
;;; Copyright © 2017 Stefan Reichör
+;;; Copyright © 2018 Pierre Neidhardt
;;;
;;; This file is part of GNU Guix.
;;;
@@ -39,6 +40,7 @@
#:use-module (gnu packages)
#:use-module (gnu packages autotools)
#:use-module (gnu packages compression)
+ #:use-module (gnu packages curl)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages java)
#:use-module (gnu packages gnuzilla)
@@ -2095,3 +2097,39 @@ derivations of regular expressions.")
"The Haskell XML Toolbox bases on the ideas of HaXml and HXML, but
introduces a more general approach for processing XML with Haskell.")
(license license:expat)))
+
+(define-public xmlrpc-c
+ (package
+(name "xmlrpc-c")
+(version "1.43.08")
+(source (origin
+ (method url-fetch)
+ (uri (string-append
"mirror://sourceforge/xmlrpc-c/Xmlrpc-c%20Super%20Stable/"
+ version "/xmlrpc-c-" version ".tgz"))
+ (sha256
+ (base32
+ "18zwbj6i2hpcn5riiyp8i6rml0sfv60dd7phw1x8g4r4lj2bbxf9"
+(build-system gnu-build-system)
+(inputs
+ `(("curl" ,curl)))
+(native-inputs
+ `(;; For tools, if ever needed.
+ ("perl" ,perl)))
+(arguments
+ `(#:make-flags ; Add $libdir to the RUNPATH of all the executables.
+ (list (string-append "LDFLAGS_PERSONAL=-Wl,-rpath=" %output "/lib"))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-/bin/sh-in-tests
+ (lambda _
+ (substitute* "GNUmakefile"
+ (("#! /bin/sh") (which "sh")))
+ #t)
+(home-page "http://xmlrpc-c.sourceforge.net/;)
+(synopsis "Lightweight RPC library based on XML and HTTP")
+(description
+ "XML-RPC is a quick-and-easy way to make procedure calls over the
Internet.
+It converts the procedure call into an XML document, sends it to a remote
+server using HTTP, and gets back the response as XML. This library provides a
+modular implementation of XML-RPC for C and C++.")
+(license (list license:psfl license:expat
branch master updated (97f33b0 -> ddd925f)
ambrevar pushed a change to branch master in repository guix. from 97f33b0 gnu: guile-newt: Update to revision 1. new 2cce23b gnu: Add xmlrpc-c. new ddd925f gnu: Add emacs-gtk-look. The 2 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: gnu/packages/emacs.scm | 38 ++ gnu/packages/xml.scm | 38 ++ 2 files changed, 76 insertions(+)
branch master updated (1b12b57 -> 97f33b0)
mothacehe pushed a change to branch master in repository guix. from 1b12b57 gnu: powertabeditor: Fetch sources from git. new 97f33b0 gnu: guile-newt: Update to revision 1. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: gnu/packages/guile.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-)
01/01: gnu: guile-newt: Update to revision 1.
mothacehe pushed a commit to branch master
in repository guix.
commit 97f33b05ec90deecaf43587467ed3fbbcb36bd2a
Author: Mathieu Othacehe
Date: Fri Nov 9 19:33:00 2018 +0900
gnu: guile-newt: Update to revision 1.
* gnu/packages/guile.scm (guile-newt): Update to revision 1.
---
gnu/packages/guile.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index 3c8d2e5..8c55c74 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -2289,8 +2289,8 @@ tracker's SOAP service, such as
@url{https://bugs.gnu.org}.;)
;; There has not been any release yet.
(define-public guile-newt
- (let ((commit "596ad760bee1be419d71271732f0f30eaee55143")
-(revision "0"))
+ (let ((commit "4eaa3cf84b9b426cc0ff7bec48b76cca6ca3ec83")
+(revision "1"))
(package
(name "guile-newt")
(version (string-append "0-" revision "." (string-take commit 9)))
@@ -2302,7 +2302,7 @@ tracker's SOAP service, such as
@url{https://bugs.gnu.org}.;)
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "18qqbi0bc7vp2vlrhib3p3wwgn7wrlv5728dn0avirhw4fxxivnf"
+ "0ww7jbdsmjlsxm60ym6cb5s5kc4ljz8bn4y2lvcqnap0aihqfk10"
(build-system gnu-build-system)
(arguments
'(#:make-flags
