38/61: gnu: r-multcomp: Update to 1.4-12.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit c8cf595a31b85f643080e4961e3438ff958fe764
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:36 2020 +0100

gnu: r-multcomp: Update to 1.4-12.

* gnu/packages/cran.scm (r-multcomp): Update to 1.4-12.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d1681c1..406d256 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8221,14 +8221,14 @@ packages maintained by Torsten Hothorn.")
 (define-public r-multcomp
   (package
 (name "r-multcomp")
-(version "1.4-11")
+(version "1.4-12")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "multcomp" version))
(sha256
 (base32
- "0jw9661hs4396wz9vflk3rak0ryzj1cg2pnndsn1gb4fjyf2vlhb"
+ "14c2f10rz546w7ly5f4r6wnd07yj5gic38an17gxny1vf2nsff0b"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-codetools" ,r-codetools)

42/61: gnu: r-bookdown: Update to 0.17.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 4db8ee8b9aba5fba08d865686c4e893814b17e80
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:59 2020 +0100

gnu: r-bookdown: Update to 0.17.

* gnu/packages/cran.scm (r-bookdown): Update to 0.17.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 56ee6ae..961f994 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13616,13 +13616,13 @@ SELECT or UPDATE queries to an end-point.")
 (define-public r-bookdown
   (package
 (name "r-bookdown")
-(version "0.16")
+(version "0.17")
 (source (origin
   (method url-fetch)
   (uri (cran-uri "bookdown" version))
   (sha256
(base32
-"1gwgvx1yg6q3wccnhidr3gshdvlgr42i4pvlg4h29kpsa7smjiv1"
+"10b4gnd6z3w13pysqqan43blxcbk7bgbzc7wr83b23ag1lh2n40j"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-htmltools" ,r-htmltools)

43/61: gnu: r-rttf2pt1: Update to 1.3.8.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit a0bb0df325233ef262789f15749f17ba53fce933
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:43:04 2020 +0100

gnu: r-rttf2pt1: Update to 1.3.8.

* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.8.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 961f994..743110f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13911,14 +13911,14 @@ interaction search in high-dimensional data.")
 (define-public r-rttf2pt1
   (package
 (name "r-rttf2pt1")
-(version "1.3.7")
+(version "1.3.8")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "Rttf2pt1" version))
(sha256
 (base32
- "12hf9r3mhjr9sawdvf7qhjf1zph2q64f77i81jwvy7awidbm0kja"
+ "0b3f2zkmbyshn19cnaaf042d0zwf43l9jnkqizfhxxwb93a4c1jn"
 (properties `((upstream-name . "Rttf2pt1")))
 (build-system r-build-system)
 (home-page "https://github.com/wch/Rttf2pt1;)

56/61: gnu: r-inspect: Update to 1.16.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 99e2a24978ff91a8d3a8fa700d2b01eca66cdbb3
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:10:08 2020 +0100

gnu: r-inspect: Update to 1.16.2.

* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9b6201d..b6414fd 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2000,14 +2000,14 @@ genes or proteins in these datasets.")
 (define-public r-inspect
   (package
 (name "r-inspect")
-(version "1.16.1")
+(version "1.16.2")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "INSPEcT" version))
(sha256
 (base32
- "03cf9c94ra4f847ndlf8sn2cq1kl1055514wjq0lqbvlbfdj1dq3"
+ "1g8la7k4pnyr2hvk4yjd1bwvjy6nqbbb0fwxrrh2ifgqf4h21x2p"
 (properties `((upstream-name . "INSPEcT")))
 (build-system r-build-system)
 (propagated-inputs

36/61: gnu: r-sjmisc: Update to 2.8.3.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 5ec991e6f3bd21447c10468e113e7d602eb608b2
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:22 2020 +0100

gnu: r-sjmisc: Update to 2.8.3.

* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2890a83..242d6e3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6438,14 +6438,14 @@ vice versa), or to deal with multiple declared missing 
values.")
 (define-public r-sjmisc
   (package
 (name "r-sjmisc")
-(version "2.8.2")
+(version "2.8.3")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "sjmisc" version))
(sha256
 (base32
- "0rl0bmk91wc4dxdgy008fl0dwkx3ffvys30vgpnr78lb4pk45nb2"
+ "0w8l9grmp4q775jrf4q6rxx36ld5daz9b0gdxyyh42xfihk6m62h"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-dplyr" ,r-dplyr)

52/61: gnu: r-iranges: Update to 2.20.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit f7b5c1a02ff4fe4694252bf44e1650af93f4130b
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:09:21 2020 +0100

gnu: r-iranges: Update to 2.20.2.

* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.2.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 03ddd30..b722590 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7372,13 +7372,13 @@ S4Vectors package itself.")
 (define-public r-iranges
   (package
 (name "r-iranges")
-(version "2.20.1")
+(version "2.20.2")
 (source (origin
   (method url-fetch)
   (uri (bioconductor-uri "IRanges" version))
   (sha256
(base32
-"0qssp04wfrc1r92hd3szy03n8sdz8vrqjdxa2mcrsc0k0n9bchz5"
+"1jhnxb9yacmj2z82b6992gihjvj1a0gnjwbjiagyyx03fqnv23kg"
 (properties
  `((upstream-name . "IRanges")))
 (build-system r-build-system)

53/61: gnu: r-delayedarray: Update to 0.12.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit d64124df89d61bf3429eb7bd7f50179be6740dd8
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:09:27 2020 +0100

gnu: r-delayedarray: Update to 0.12.2.

* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.2.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b722590..32eea9d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7783,13 +7783,13 @@ tab-delimited (tabix) files.")
 (define-public r-delayedarray
   (package
 (name "r-delayedarray")
-(version "0.12.1")
+(version "0.12.2")
 (source (origin
   (method url-fetch)
   (uri (bioconductor-uri "DelayedArray" version))
   (sha256
(base32
-"1yr4i2x127v814nxg53aibp77p3vg76f3n3hgknpwx3snfhc81xs"
+"09lackgix5jpm16k0mz2zkibflfb4wzidbz4q32mlxmklf40037q"
 (properties
  `((upstream-name . "DelayedArray")))
 (build-system r-build-system)

40/61: gnu: r-future-apply: Update to 1.4.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 35bbec27cb5bbee788c2ebedf5d88c5968257153
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:47 2020 +0100

gnu: r-future-apply: Update to 1.4.0.

* gnu/packages/cran.scm (r-future-apply): Update to 1.4.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9ae7460..8a7401a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11688,14 +11688,14 @@ the local machine to, say, distributed processing on 
a remote compute cluster.")
 (define-public r-future-apply
   (package
 (name "r-future-apply")
-(version "1.3.0")
+(version "1.4.0")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "future.apply" version))
(sha256
 (base32
- "0wd3bh114zkvrqlpn8gqz4ix1igr9hr8x72h2g00a7mqkfjfqx33"
+ "1kgq6dv96hdy35kysqkn606nj7s9dp4ibgpm6n46gqhc5n75lzkk"
 (properties `((upstream-name . "future.apply")))
 (build-system r-build-system)
 (propagated-inputs

58/61: gnu: r-mlinterfaces: Update to 1.66.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 516fa945b3884fe66e5854c64f4560fc5b6236be
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:10:22 2020 +0100

gnu: r-mlinterfaces: Update to 1.66.2.

* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
---
 gnu/packages/bioconductor.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8a33aed..ac0236a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3493,14 +3493,14 @@ profiles (GO and KEGG) of gene and gene clusters.")
 (define-public r-mlinterfaces
   (package
 (name "r-mlinterfaces")
-(version "1.66.0")
+(version "1.66.2")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "MLInterfaces" version))
(sha256
 (base32
- "1vnzqd3y3jk1wgxybckzrcgwk0ly7zgcz5ki1ib0bk1jwv6xk5x8"
+ "1wc280iw9vllg6f58vsdj895yaqs8w42kl7jk8sgii009gwlaj8d"
 (properties `((upstream-name . "MLInterfaces")))
 (build-system r-build-system)
 (propagated-inputs
@@ -3518,7 +3518,6 @@ profiles (GO and KEGG) of gene and gene clusters.")
("r-mlbench" ,r-mlbench)
("r-pls" ,r-pls)
("r-rcolorbrewer" ,r-rcolorbrewer)
-   ("r-rda" ,r-rda)
("r-rpart" ,r-rpart)
("r-sfsmisc" ,r-sfsmisc)
("r-shiny" ,r-shiny)

55/61: gnu: r-regioner: Update to 1.18.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 7a8fcdacccea42d6a98d74cf01eb16304f3037b0
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:10:02 2020 +0100

gnu: r-regioner: Update to 1.18.1.

* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 689a777..9b6201d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1166,14 +1166,14 @@ the Human Protein Atlas project.")
 (define-public r-regioner
   (package
 (name "r-regioner")
-(version "1.18.0")
+(version "1.18.1")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "regioneR" version))
(sha256
 (base32
- "0m073hrqp62zpd2blnqm5ka539hcilir05m8av14vdhzhjzp13ya"
+ "0if7r6njz3ahm545383z5mzmzw8fdvw80a9lfz160j5pcgpx2dq9"
 (properties `((upstream-name . "regioneR")))
 (build-system r-build-system)
 (propagated-inputs

50/61: gnu: r-biocstyle: Update to 2.14.4.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 7241b44ad497d6a59c5cc55af2375ba4ba02143d
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:08:43 2020 +0100

gnu: r-biocstyle: Update to 2.14.4.

* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.4.
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0e4cb5b..0f7c7b7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus 

+;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus 

 ;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft 
 ;;; Copyright © 2015, 2016 Pjotr Prins 
 ;;; Copyright © 2015 Andreas Enge 
@@ -7272,13 +7272,13 @@ also known as views, in a controlled vocabulary.")
 (define-public r-biocstyle
   (package
 (name "r-biocstyle")
-(version "2.14.2")
+(version "2.14.4")
 (source (origin
   (method url-fetch)
   (uri (bioconductor-uri "BiocStyle" version))
   (sha256
(base32
-"0nc1cbzp5zdwc0rss4r6v7cpgynmmnj3sczwmajr58nabkndwsvf"
+"1x71in059zql40f4c87bd1gf96r945kdvwbq61jmch9d3d8nwxbb"
 (properties
  `((upstream-name . "BiocStyle")))
 (build-system r-build-system)

59/61: gnu: r-ropls: Update to 1.18.6.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 3f42bd81a59b8997a430b030ad5e9ff920af30e8
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:10:35 2020 +0100

gnu: r-ropls: Update to 1.18.6.

* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ac0236a..d7c5de7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5164,14 +5164,14 @@ packages.")
 (define-public r-ropls
   (package
 (name "r-ropls")
-(version "1.18.0")
+(version "1.18.6")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "ropls" version))
(sha256
 (base32
- "05w1zrq92w3jfwq5sdyj27m5qjg4zv7acywia8vd6y5fbgcnyzlp"
+ "1sm2fmygrra9gdcs90lmk5y1ag6arga6159kggx4ij8bkhyc66vb"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-biobase" ,r-biobase)

46/61: gnu: r-parameters: Update to 0.4.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit dedbacdc755fe9781a792f83a48e9daf728dcbb5
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:43:20 2020 +0100

gnu: r-parameters: Update to 0.4.0.

* gnu/packages/cran.scm (r-parameters): Update to 0.4.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fe1d2a5..f6863aa 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15877,14 +15877,14 @@ in pipelines.")
 (define-public r-parameters
   (package
 (name "r-parameters")
-(version "0.3.0")
+(version "0.4.0")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "parameters" version))
(sha256
 (base32
- "0ifb9g1h8sn661q7jf9d8glk58gxdcym5ywbmx7phwn0y3is5wdv"
+ "0z1hdxgippchij28h8xbbz6l29kkyakwxxj5vxnpic40cpkqqdd6"
 (properties `((upstream-name . "parameters")))
 (build-system r-build-system)
 (propagated-inputs

47/61: gnu: r-desolve: Update to 1.27.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 951e1d4be70425aa5f77e801f5a8e9770ff68fde
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:43:26 2020 +0100

gnu: r-desolve: Update to 1.27.1.

* gnu/packages/cran.scm (r-desolve): Update to 1.27.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f6863aa..dfc35d7 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16034,13 +16034,13 @@ programming problems.")
 (define-public r-desolve
   (package
 (name "r-desolve")
-(version "1.27")
+(version "1.27.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "deSolve" version))
(sha256
-(base32 "1qhjq4vxlxd9qmhf6i26x1k7bzhldlxzbby1zgcplicdvlqk951d"
+(base32 "05sax045qrk550gsn2i7krb9rbg51rx88x4v190acsigqknxffrv"
 (properties `((upstream-name . "deSolve")))
 (build-system r-build-system)
 (native-inputs

60/61: gnu: r-flowworkspace: Update to 3.34.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit e8ccb98a0823ca1d426cd00620c668226665315a
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:10:41 2020 +0100

gnu: r-flowworkspace: Update to 3.34.1.

* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d7c5de7..e2ee120 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5586,14 +5586,14 @@ for other R packages to compile and link against.")
 (define-public r-flowworkspace
   (package
 (name "r-flowworkspace")
-(version "3.34.0")
+(version "3.34.1")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "flowWorkspace" version))
(sha256
 (base32
- "0hvbkxyylsygra31l1lxyvbsr5hc50lqy1y7gwrfgrfil4a2m762"
+ "1ijbc6z9ljhrw3cqr02smgplhrfg44gzrb1dq4gbrpq3nj4khhpn"
 (properties `((upstream-name . "flowWorkspace")))
 (build-system r-build-system)
 (propagated-inputs

61/61: gnu: r-variancepartition: Update to 1.16.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit d1ac643062b51ea69ed2413e2d4457ab8db4fd9d
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:10:46 2020 +0100

gnu: r-variancepartition: Update to 1.16.1.

* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e2ee120..ef34b99 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6451,14 +6451,14 @@ arrays based on fast wavelet-based functional models.")
 (define-public r-variancepartition
   (package
 (name "r-variancepartition")
-(version "1.16.0")
+(version "1.16.1")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "variancePartition" version))
(sha256
 (base32
- "1ygx7f2sp4b7ilgspm6vqcbjxs7br9s6g3gwcdb978kx03ymp4i8"
+ "02pzsff14j4am2d949mh8xgi0c7k44g09q4lr6nqm08vf92brb6g"
 (properties
  `((upstream-name . "variancePartition")))
 (build-system r-build-system)

37/61: gnu: r-proc: Update to 1.16.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 707608fdc4edfadec565562a8405657631371732
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:28 2020 +0100

gnu: r-proc: Update to 1.16.1.

* gnu/packages/cran.scm (r-proc): Update to 1.16.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 242d6e3..d1681c1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6867,14 +6867,14 @@ containing one or more SNPs that evolved under 
directional selection.")
 (define-public r-proc
   (package
 (name "r-proc")
-(version "1.15.3")
+(version "1.16.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "pROC" version))
(sha256
 (base32
- "1jx8af9p6sxbypqvj1cci7q9sbyaw310inbjxibjcr3acj59h45h"
+ "0qkp1byl2xspxaaf0by6mvvrhg7wlz6fxmynz2hkh0ds24w7ig9m"
 (properties `((upstream-name . "pROC")))
 (build-system r-build-system)
 (propagated-inputs

57/61: gnu: r-clusterprofiler: Update to 3.14.3.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit ac9a9c374c4b03a410f8652666d8fc600c02ef11
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:10:14 2020 +0100

gnu: r-clusterprofiler: Update to 3.14.3.

* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
---
 gnu/packages/bioconductor.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b6414fd..8a33aed 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3460,14 +3460,14 @@ All the visualization methods are developed based on 
ggplot2 graphics.")
 (define-public r-clusterprofiler
   (package
 (name "r-clusterprofiler")
-(version "3.14.2")
+(version "3.14.3")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "clusterProfiler" version))
(sha256
 (base32
- "1y1l3yf1r1ykl9ngipvyzl5hbxxsfz7z5q5rcywkyss2b2b6gsg8"
+ "08pd7bmqmyxncj09ilz8yb9sf1pv9ni98y8b93pz2giy7pl407hg"
 (properties
  `((upstream-name . "clusterProfiler")))
 (build-system r-build-system)

44/61: gnu: r-batchtools: Update to 0.9.12.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 697e103ad08061edd94aa664e76af9fa20eaa499
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:43:09 2020 +0100

gnu: r-batchtools: Update to 0.9.12.

* gnu/packages/cran.scm (r-batchtools): Update to 0.9.12.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 743110f..e49d939 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15036,14 +15036,14 @@ extends the lme4 package.")
 (define-public r-batchtools
   (package
 (name "r-batchtools")
-(version "0.9.11")
+(version "0.9.12")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "batchtools" version))
(sha256
 (base32
- "02mj21ypcjv5fs7ajf63p6bq0cyvihdl55hlpqx6kmsfjin1cr0v"
+ "16x524hvy9d8p7r4fi1c8mixcvzgsjbf3y0vxaa56ssbbab4p7f9"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-backports" ,r-backports)

35/61: gnu: r-insight: Update to 0.8.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 4a3351e3cd1821849cc6d3c0ec1814a0cb2fd5a8
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:16 2020 +0100

gnu: r-insight: Update to 0.8.0.

* gnu/packages/cran.scm (r-insight): Update to 0.8.0.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c98620d..2890a83 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6383,14 +6383,14 @@ other add-on packages.")
 (define-public r-insight
   (package
 (name "r-insight")
-(version "0.7.1")
+(version "0.8.0")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "insight" version))
(sha256
 (base32
- "0scjmr8qvwaswb9wfq2lxp1v5fl72way8cid9agrf0z1agp0adad"
+ "1bkcwvjpfy4q4k478x8x42yiqz6v0fk6z6hfp6fli3h63smlmck0"
 (build-system r-build-system)
 (home-page "https://easystats.github.io/insight/;)
 (synopsis "Easy access to model information for various model objects")

41/61: gnu: r-shinyjs: Update to 1.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit f3247478432fecb5c36d703569ad513a1864166a
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:53 2020 +0100

gnu: r-shinyjs: Update to 1.1.

* gnu/packages/cran.scm (r-shinyjs): Update to 1.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8a7401a..56ee6ae 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12104,14 +12104,14 @@ transformation, respectively.")
 (define-public r-shinyjs
   (package
 (name "r-shinyjs")
-(version "1.0")
+(version "1.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "shinyjs" version))
(sha256
 (base32
- "113zpijri0l80rlgrvqn6bxk0sdqgl79h7yhja2p76f9dc9i2sr8"
+ "14k8y313ppj23m9rhlk8jc94x6sbn3qrsnx6xrijiyv8m8dii1l9"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-digest" ,r-digest)

19/61: gnu: r-prettyunits: Update to 1.1.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 71ecbda54cfe15b046eaf0b7e018b7954b573091
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:23 2020 +0100

gnu: r-prettyunits: Update to 1.1.0.

* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.0.
[propagated-inputs]: Remove r-assertthat and r-magrittr.
---
 gnu/packages/cran.scm | 7 ++-
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9d234fb..955bda7 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2034,18 +2034,15 @@ statistical functions and other utilities to ease their 
usage.")
 (define-public r-prettyunits
   (package
 (name "r-prettyunits")
-(version "1.0.2")
+(version "1.1.0")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "prettyunits" version))
(sha256
 (base32
- "0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"
+ "0453vvslpkj1ysyv0cy9hw98q5wlnj7bvvz7vzl5ld8ij82lwy5c"
 (build-system r-build-system)
-(propagated-inputs
- `(("r-assertthat" ,r-assertthat)
-   ("r-magrittr" ,r-magrittr)))
 (home-page "https://github.com/gaborcsardi/prettyunits;)
 (synopsis "Pretty, human readable formatting of quantities")
 (description

34/61: gnu: r-hdf5r: Update to 1.3.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 4afe271458429d9d45b070cff150541b5173e98d
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:11 2020 +0100

gnu: r-hdf5r: Update to 1.3.1.

* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 93e2b35..c98620d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6053,14 +6053,14 @@ results to the user.")
 (define-public r-hdf5r
   (package
 (name "r-hdf5r")
-(version "1.3.0")
+(version "1.3.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "hdf5r" version))
(sha256
 (base32
- "1pq12vkfqxvcaznwaxvjdg3acimk5a20m8h18sixvxc34vnqxw8f"
+ "0hvi2cvyv6zlxgpawnmsihxclp2ln88slbrnmaxagmjswskxsrpx"
 (build-system r-build-system)
 (inputs
  `(("hdf5" ,hdf5)

22/61: gnu: r-squarem: Update to 2020.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 59d78145d708522604be7e9bc7dbc73103b8c59a
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:50 2020 +0100

gnu: r-squarem: Update to 2020.1.

* gnu/packages/cran.scm (r-squarem): Update to 2020.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index c801902..d151b0a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2635,14 +2635,14 @@ contexts.")
 (define-public r-squarem
   (package
 (name "r-squarem")
-(version "2017.10-1")
+(version "2020.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "SQUAREM" version))
(sha256
 (base32
- "10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"
+ "0v4ax1v8diw2w7fdhfzz1z0bwixkmcrc39ax3y116f399rc06qbs"
 (properties `((upstream-name . "SQUAREM")))
 (build-system r-build-system)
 (home-page 
"http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html;)

54/61: gnu: r-affycoretools: Update to 1.58.4.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit f8f181ae417d32bc3dec05731d9e8d6d84767b54
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:09:49 2020 +0100

gnu: r-affycoretools: Update to 1.58.4.

* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
---
 gnu/packages/bioconductor.scm | 7 ---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 863b974..689a777 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus 
+;;; Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus 

 ;;; Copyright © 2016, 2017, 2018 Roel Janssen 
 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice 
 ;;; Copyright © 2019 Simon Tournier 
@@ -1053,14 +1053,14 @@ problems in CEL-level data to help evaluate performance 
of quality metrics.")
 (define-public r-affycoretools
   (package
 (name "r-affycoretools")
-(version "1.58.3")
+(version "1.58.4")
 (source
  (origin
(method url-fetch)
(uri (bioconductor-uri "affycoretools" version))
(sha256
 (base32
- "12r9ljkp3xix0xq8d1488c8wb3a4whb805v48ynmv985bs3phc71"
+ "1p283ysib04qzaayxmrpsmk5bq0jdq2rlky180jrlskpyg6risfw"
 (properties `((upstream-name . "affycoretools")))
 (build-system r-build-system)
 (propagated-inputs
@@ -1071,6 +1071,7 @@ problems in CEL-level data to help evaluate performance 
of quality metrics.")
("r-dbi" ,r-dbi)
("r-edger" ,r-edger)
("r-gcrma" ,r-gcrma)
+   ("r-glimma" ,r-glimma)
("r-ggplot2" ,r-ggplot2)
("r-gostats" ,r-gostats)
("r-gplots" ,r-gplots)

20/61: gnu: r-bdsmatrix: Update to 1.3-4.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 3b3c13870d0149de455036992d57816b902ea3de
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:39 2020 +0100

gnu: r-bdsmatrix: Update to 1.3-4.

* gnu/packages/cran.scm (r-bdsmatrix): Update to 1.3-4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 955bda7..31a72c5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2362,14 +2362,14 @@ and S4 methods with inlined C, C++ or Fortran code 
supporting @code{.C} and
 (define-public r-bdsmatrix
   (package
 (name "r-bdsmatrix")
-(version "1.3-3")
+(version "1.3-4")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "bdsmatrix" version))
(sha256
 (base32
- "17ddvz4gnih7rx0lr1gzk280xyh6x796cf2x794dvplpiiq83skh"
+ "1sh6pg43rgqvips4fx0k4vmp5i9lmniix0bqwj2yq5m06gs227i5"
 (properties `((upstream-name . "bdsmatrix")))
 (build-system r-build-system)
 (home-page "https://cran.r-project.org/web/packages/bdsmatrix/;)

23/61: gnu: r-ddalpha: Update to 1.3.11.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit eb311f69d7f740b25fbc02444db112f2d90b60c3
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:56 2020 +0100

gnu: r-ddalpha: Update to 1.3.11.

* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.11.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d151b0a..a5f9dcf 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2907,14 +2907,14 @@ Delaunay triangulation and convex hull computation.")
 (define-public r-ddalpha
   (package
 (name "r-ddalpha")
-(version "1.3.10")
+(version "1.3.11")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "ddalpha" version))
(sha256
 (base32
- "1064g7y8d7kmvd5kjc2m48yvidmh2ci1y0xgil3pcx4ix6mf0ljz"
+ "1sdnb47r534nh138zk3a6b2mgi74nvshc7p5m304vjs9jlx4l2y3"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-bh" ,r-bh)

49/61: gnu: r-poibin: Update to 1.5.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 8ef91aeb253aa7d3cd878421c20860ae9583c718
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:43:37 2020 +0100

gnu: r-poibin: Update to 1.5.

* gnu/packages/cran.scm (r-poibin): Update to 1.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b150d1f..e998c58 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -18871,14 +18871,14 @@ Langford (2006) @url{doi:10.1145/1143844.1143857}.")
 (define-public r-poibin
   (package
 (name "r-poibin")
-(version "1.4")
+(version "1.5")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "poibin" version))
(sha256
 (base32
- "1rllgmk7yanb5amysl33kmi11lx86q5kqblyb8qqb3ckj2w4jhm2"
+ "1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"
 (properties `((upstream-name . "poibin")))
 (build-system r-build-system)
 (home-page "https://cran.r-project.org/web/packages/poibin/;)

05/61: gnu: r-bit: Update to 1.1-15.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit ecdc8bec9b1aacc9742fb7d6a034ce329b9d0ae9
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:38:58 2020 +0100

gnu: r-bit: Update to 1.1-15.1.

* gnu/packages/statistics.scm (r-bit): Update to 1.1-15.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index d223877..b8a988d 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -739,14 +739,14 @@ curves, Cox models, and parametric accelerated failure 
time models.")
 (define-public r-bit
   (package
 (name "r-bit")
-(version "1.1-14")
+(version "1.1-15.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "bit" version))
(sha256
 (base32
- "0m7jrqzpa1pk8ixcl814x06jf96nlvvr16x6did6cfk4zghsrfjw"
+ "0y351ajlrn9ywbiai46mjpwmw5pqc9ik2z24rf0bnbdcvaxdr7r8"
 (build-system r-build-system)
 (home-page "http://ff.r-forge.r-project.org;)
 (synopsis "Class for vectors of 1-bit booleans")

12/61: gnu: r-zoo: Update to 1.8-7.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit c9be8171b3af76f317a4bf30fdfd866e401abea7
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:41 2020 +0100

gnu: r-zoo: Update to 1.8-7.

* gnu/packages/statistics.scm (r-zoo): Update to 1.8-7.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index ec5f1e2..03f8e9e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4286,13 +4286,13 @@ mechanism.")
 (define-public r-zoo
   (package
 (name "r-zoo")
-(version "1.8-6")
+(version "1.8-7")
 (source (origin
   (method url-fetch)
   (uri (cran-uri "zoo" version))
   (sha256
(base32
-"1k1pmzr9nfwbxq1xf0jzn3nawv4sgnkxkgzxnm1i887jcbrs85r2"
+"1w4542zs53bm261g95086a60576v334g1jrhnbgdqni4izf2s1wy"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-lattice" ,r-lattice)))

09/61: gnu: r-catools: Update to 1.17.1.4.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 79f6c0c0bd4fe4b8992b8682d6cae8cbf294f522
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:23 2020 +0100

gnu: r-catools: Update to 1.17.1.4.

* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.4.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index f7286d9..c366fa5 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2617,13 +2617,13 @@ vectors.")
 (define-public r-catools
   (package
 (name "r-catools")
-(version "1.17.1.3")
+(version "1.17.1.4")
 (source (origin
   (method url-fetch)
   (uri (cran-uri "caTools" version))
   (sha256
(base32
-"04m7vbydxb1nipday97w29p2miykyzxw572j9lda6jxmmp2kb1yp"
+"151vsfakg32jn9msfdjcizhizm8k8yxlfpnsbagns9ihr59s3w49"
 (properties `((upstream-name . "caTools")))
 (build-system r-build-system)
 (propagated-inputs

24/61: gnu: r-psych: Update to 1.9.12.31.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 5072462cb6e9f87120d0bbd5b6f5604e9e1a564b
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:03 2020 +0100

gnu: r-psych: Update to 1.9.12.31.

* gnu/packages/cran.scm (r-psych): Update to 1.9.12.31.
[propagated-inputs]: Remove r-foreign.
---
 gnu/packages/cran.scm | 7 +++
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a5f9dcf..87cd030 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3012,18 +3012,17 @@ problems as well as resampling based estimators of 
prediction error.")
 (define-public r-psych
   (package
 (name "r-psych")
-(version "1.9.12")
+(version "1.9.12.31")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "psych" version))
(sha256
 (base32
- "13r7fyjsl93m121awnwfhya8a0lw0l2byn60yqdbf9gp3lmb9ny0"
+ "02i9p6appf15hjdsi58g39bzs9as40f9qhy8m7ki30hd1fz1vrr5"
 (build-system r-build-system)
 (propagated-inputs
- `(("r-foreign" ,r-foreign)
-   ("r-lattice" ,r-lattice)
+ `(("r-lattice" ,r-lattice)
("r-mnormt" ,r-mnormt)
("r-nlme" ,r-nlme)))
 (home-page "https://cran.r-project.org/web/packages/psych/;)

14/61: gnu: r-prabclus: Update to 2.3-2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 96e11a632ddf6faf0df21badbafb377e87a2e593
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:52 2020 +0100

gnu: r-prabclus: Update to 2.3-2.

* gnu/packages/statistics.scm (r-prabclus): Update to 2.3-2.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 617ad8c..0475573 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4743,14 +4743,14 @@ and resampling-based inference.")
 (define-public r-prabclus
   (package
 (name "r-prabclus")
-(version "2.3-1")
+(version "2.3-2")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "prabclus" version))
(sha256
 (base32
- "1h5k13w8mmmdy74l145zh64f339wy78z1nlg8xr3zg23gmv98cpg"
+ "0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-mass" ,r-mass)

51/61: gnu: r-s4vectors: Update to 0.24.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit fdf69f1ee0f604041028b325c6e9fec9577adb23
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 06:09:16 2020 +0100

gnu: r-s4vectors: Update to 0.24.2.

* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.2.
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0f7c7b7..03ddd30 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7345,13 +7345,13 @@ checks on R packages that are to be submitted to the 
Bioconductor repository.")
 (define-public r-s4vectors
   (package
 (name "r-s4vectors")
-(version "0.24.1")
+(version "0.24.2")
 (source (origin
   (method url-fetch)
   (uri (bioconductor-uri "S4Vectors" version))
   (sha256
(base32
-"1rr7ml3gn83g8fbvhgvryyzlh4p3qgpwcrsz6ii4y7gh1hqxggpx"
+"1s1h00k2ki7sd0hz4l8n41xr6ixszag7lm0ryrbb08idgcy16ipn"
 (properties
  `((upstream-name . "S4Vectors")))
 (build-system r-build-system)

11/61: gnu: r-gplots: Update to 3.0.1.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 703ae530c5605afdf5c3d4d16878c240e0ecf37d
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:36 2020 +0100

gnu: r-gplots: Update to 3.0.1.2.

* gnu/packages/statistics.scm (r-gplots): Update to 3.0.1.2.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index d681bdd..ec5f1e2 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4216,14 +4216,14 @@ including:
 (define-public r-gplots
   (package
 (name "r-gplots")
-(version "3.0.1.1")
+(version "3.0.1.2")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "gplots" version))
(sha256
 (base32
- "033plcfs9w8pmn84n24mdhiixdirc2a7pz6dvm61fpd20gwh7cbx"
+ "0vrm7wqrmqsmfrc070r9chpzb0vv60pay2lyar9qxfry6bsrvx86"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-catools" ,r-catools)

33/61: gnu: r-fansi: Update to 0.4.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 220875e123743de4783b76853f98b92d1685d10d
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:05 2020 +0100

gnu: r-fansi: Update to 0.4.1.

* gnu/packages/cran.scm (r-fansi): Update to 0.4.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 21771c5..93e2b35 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -6011,14 +6011,14 @@ steps and provides ggplot2-based elegant data 
visualization.")
 (define-public r-fansi
   (package
 (name "r-fansi")
-(version "0.4.0")
+(version "0.4.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "fansi" version))
(sha256
 (base32
- "02f2rx7v7wz6w97m2slwky2i5y8f9iafycmkyr3siy3z3k8fj171"
+ "028ywjy538psnmdnddvy5jr3idzffr4hikzr4x97x0m30g4fws9w"
 (build-system r-build-system)
 (native-inputs
  `(("r-knitr" ,r-knitr))) ; for vignettes

29/61: gnu: r-xfun: Update to 0.12.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit b468f073fab2a2449d2e546108a0daf6c440f8bd
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:42 2020 +0100

gnu: r-xfun: Update to 0.12.

* gnu/packages/cran.scm (r-xfun): Update to 0.12.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d878ca1..6a2a533 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4008,13 +4008,13 @@ iVAT).")
 (define-public r-xfun
   (package
 (name "r-xfun")
-(version "0.11")
+(version "0.12")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
-(base32 "0dncw6bqkal7nyaj9arxy0y3nkdzmrbibcjh84m1cxd4phiw"
+(base32 "0sgh8kafi9x1glmmcp1ly827pm8q7fsfngbplr41fbb4nc9363df"
 (build-system r-build-system)
 (home-page "https://github.com/yihui/xfun;)
 (synopsis "Miscellaneous functions")

30/61: gnu: r-tinytex: Update to 0.19.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit b3f02e1af5ad1d41365a3653a449c99fbcde3b87
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:48 2020 +0100

gnu: r-tinytex: Update to 0.19.

* gnu/packages/cran.scm (r-tinytex): Update to 0.19.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6a2a533..4580385 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4152,14 +4152,14 @@ terminals.")
 (define-public r-tinytex
   (package
 (name "r-tinytex")
-(version "0.18")
+(version "0.19")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "tinytex" version))
(sha256
 (base32
- "04mpbhadixbxmnazj0q6cj973cajchscvyh1k6a5b3qk26dp5krr"
+ "0jlcrvcqcbkimg7w40z5vhlnakb829vfgqpspm3pfl8karwzgqp6"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-xfun" ,r-xfun)))

15/61: gnu: r-modelmetrics: Update to 1.2.2.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit f4b6da32c572c681d4700093fe0c46c4fe4a4d21
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:57 2020 +0100

gnu: r-modelmetrics: Update to 1.2.2.1.

* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.2.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0475573..4929448 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5063,14 +5063,14 @@ decompositions of such matrices, and solutions of 
linear systems.")
 (define-public r-modelmetrics
   (package
 (name "r-modelmetrics")
-(version "1.2.2")
+(version "1.2.2.1")
 (source
  (origin
(method url-fetch)
 (uri (cran-uri "ModelMetrics" version))
 (sha256
  (base32
-  "158ddbw2snlyzd2q6mdaif5i67kq4qfvadylwjxgv1w2cmszrmk6"
+  "17yw46yr0n9hddvlhh73jdpmpdlpa581n5xjpwkr6cpr2f7xxpqc"
 (properties `((upstream-name . "ModelMetrics")))
 (build-system r-build-system)
 (propagated-inputs

31/61: gnu: r-trend: Update to 1.1.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit dc196dfd44e83d2fa5da6afaf18fd99d813ab011
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:54 2020 +0100

gnu: r-trend: Update to 1.1.2.

* gnu/packages/cran.scm (r-trend): Update to 1.1.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4580385..69c45e5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4620,14 +4620,14 @@ interface.")
 (define-public r-trend
   (package
 (name "r-trend")
-(version "1.1.1")
+(version "1.1.2")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "trend" version))
(sha256
 (base32
- "1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q"
+ "09b6ycyfgs4xlhx6kn6qm5rl2acp58hzhv8qclzn3kb1wjjyvxy5"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-extradistr" ,r-extradistr)))

25/61: gnu: r-recipes: Update to 0.1.9.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit c38f4c38741ec7fbd670b4c2977506a074c5e1da
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:16 2020 +0100

gnu: r-recipes: Update to 0.1.9.

* gnu/packages/cran.scm (r-recipes): Update to 0.1.9.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 87cd030..fd4b14b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3100,14 +3100,14 @@ provides a one-row summary of model-level statistics.")
 (define-public r-recipes
   (package
 (name "r-recipes")
-(version "0.1.8")
+(version "0.1.9")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "recipes" version))
(sha256
 (base32
- "1n32qc2a3n9cykm8dv9qcr77kdhqfsjiqf6kgfk9s0lnpx2zaldm"
+ "1fmnka583sqm6v5bhxbllb4cd5xfqbf268aij2xgxiwckv3c0ynm"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-dplyr" ,r-dplyr)

39/61: gnu: r-tmb: Update to 1.7.16.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit c7040fe4add6773851fb08d1e1ec7614a470bdef
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:42 2020 +0100

gnu: r-tmb: Update to 1.7.16.

* gnu/packages/cran.scm (r-tmb): Update to 1.7.16.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 406d256..9ae7460 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8379,14 +8379,14 @@ Bayesian modeling.")
 (define-public r-tmb
   (package
 (name "r-tmb")
-(version "1.7.15")
+(version "1.7.16")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "TMB" version))
(sha256
 (base32
- "1r2d8c5iazihba42sn33yarv0dcfiy989sx64zcf14zr8k6cgjzs"
+ "0lly12hdi99iklwr0vg9xkyhi038w4gncbf895qcwbndmqp0lx44"
 (properties `((upstream-name . "TMB")))
 (build-system r-build-system)
 (propagated-inputs

13/61: gnu: r-statmod: Update to 1.4.33.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 3ff847630265e8a56c79448a66beb3f080586b97
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:47 2020 +0100

gnu: r-statmod: Update to 1.4.33.

* gnu/packages/statistics.scm (r-statmod): Update to 1.4.33.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 03f8e9e..617ad8c 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4442,13 +4442,13 @@ Wall Street Journal, among others.  This package also 
provides
 (define-public r-statmod
   (package
 (name "r-statmod")
-(version "1.4.32")
+(version "1.4.33")
 (source (origin
   (method url-fetch)
   (uri (cran-uri "statmod" version))
   (sha256
(base32
-"083yyp84xj85zg4bhz7i90bqzl3p6155ch4abwsfc9k1lv7s2rrg"
+"1fbi5m4c0lingm2vvi0g6jf8f2mg1h01xwyz5rnymrq7gs0ibiks"
 (build-system r-build-system)
 (home-page "https://cran.r-project.org/web/packages/statmod;)
 (native-inputs

48/61: gnu: r-gdina: Update to 2.7.8.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 4fac081a49e422024c144603ef513fb7382ee3b3
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:43:32 2020 +0100

gnu: r-gdina: Update to 2.7.8.

* gnu/packages/cran.scm (r-gdina): Update to 2.7.8.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index dfc35d7..b150d1f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -17879,14 +17879,14 @@ allowed.")
 (define-public r-gdina
   (package
 (name "r-gdina")
-(version "2.7.3")
+(version "2.7.8")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "GDINA" version))
(sha256
 (base32
- "0875xfbm36gqzr0116xzlbm8rlff85rybr4s4hjzfflfvjdhgvfx"
+ "1aj2ssd7vpszl7p22srkkkpx4a7gkc38vrv3bq7j1zr32096y4zj"
 (properties `((upstream-name . "GDINA")))
 (build-system r-build-system)
 (propagated-inputs

branch master updated (429c828 -> d1ac643)

[guix-commits]

rekado pushed a change to branch master
in repository guix.

from 429c828  gnu: icecat: Fix support for ffmpeg codecs.
 new 8cc9636  gnu: r-caret: Move to (gnu packages cran).
 new 91afb47  gnu: r-caret: Do not abbreviate "misc".
 new 62d8020  gnu: r-caret: Update to 6.0-85.
 new e05b5da  gnu: r-mvtnorm: Update to 1.0-12.
 new ecdc8be  gnu: r-bit: Update to 1.1-15.1.
 new 800219d  gnu: r-stringi: Update to 1.4.5.
 new 97e20ad  gnu: r-bh: Update to 1.72.0-3.
 new 0d9fed2  gnu: r-hms: Update to 0.5.3.
 new 79f6c0c  gnu: r-catools: Update to 1.17.1.4.
 new b210274  gnu: r-rsqlite: Update to 2.2.0.
 new 703ae53  gnu: r-gplots: Update to 3.0.1.2.
 new c9be817  gnu: r-zoo: Update to 1.8-7.
 new 3ff8476  gnu: r-statmod: Update to 1.4.33.
 new 96e11a6  gnu: r-prabclus: Update to 2.3-2.
 new f4b6da3  gnu: r-modelmetrics: Update to 1.2.2.1.
 new 0169d77  gnu: r-ranger: Update to 0.12.1.
 new af67eba  gnu: r-rgooglemaps: Update to 1.4.5.1.
 new e899ef3  gnu: r-getoptlong: Update to 0.1.8.
 new 71ecbda  gnu: r-prettyunits: Update to 1.1.0.
 new 3b3c138  gnu: r-bdsmatrix: Update to 1.3-4.
 new e931661  gnu: r-suppdists: Update to 1.1-9.5.
 new 59d7814  gnu: r-squarem: Update to 2020.1.
 new eb311f6  gnu: r-ddalpha: Update to 1.3.11.
 new 5072462  gnu: r-psych: Update to 1.9.12.31.
 new c38f4c3  gnu: r-recipes: Update to 0.1.9.
 new 831e460  gnu: r-vcd: Update to 1.4-5.
 new e8bcca8  gnu: r-ggridges: Update to 0.5.2.
 new 743b12c  gnu: r-cli: Update to 2.0.1.
 new b468f07  gnu: r-xfun: Update to 0.12.
 new b3f02e1  gnu: r-tinytex: Update to 0.19.
 new dc196df  gnu: r-trend: Update to 1.1.2.
 new b329d5f  gnu: r-bibtex: Update to 0.4.2.2.
 new 220875e  gnu: r-fansi: Update to 0.4.1.
 new 4afe271  gnu: r-hdf5r: Update to 1.3.1.
 new 4a3351e  gnu: r-insight: Update to 0.8.0.
 new 5ec991e  gnu: r-sjmisc: Update to 2.8.3.
 new 707608f  gnu: r-proc: Update to 1.16.1.
 new c8cf595  gnu: r-multcomp: Update to 1.4-12.
 new c7040fe  gnu: r-tmb: Update to 1.7.16.
 new 35bbec2  gnu: r-future-apply: Update to 1.4.0.
 new f324747  gnu: r-shinyjs: Update to 1.1.
 new 4db8ee8  gnu: r-bookdown: Update to 0.17.
 new a0bb0df  gnu: r-rttf2pt1: Update to 1.3.8.
 new 697e103  gnu: r-batchtools: Update to 0.9.12.
 new 82ab1f4  gnu: r-umap: Update to 0.2.4.1.
 new dedbacd  gnu: r-parameters: Update to 0.4.0.
 new 951e1d4  gnu: r-desolve: Update to 1.27.1.
 new 4fac081  gnu: r-gdina: Update to 2.7.8.
 new 8ef91ae  gnu: r-poibin: Update to 1.5.
 new 7241b44  gnu: r-biocstyle: Update to 2.14.4.
 new fdf69f1  gnu: r-s4vectors: Update to 0.24.2.
 new f7b5c1a  gnu: r-iranges: Update to 2.20.2.
 new d64124d  gnu: r-delayedarray: Update to 0.12.2.
 new f8f181a  gnu: r-affycoretools: Update to 1.58.4.
 new 7a8fcda  gnu: r-regioner: Update to 1.18.1.
 new 99e2a24  gnu: r-inspect: Update to 1.16.2.
 new ac9a9c3  gnu: r-clusterprofiler: Update to 3.14.3.
 new 516fa94  gnu: r-mlinterfaces: Update to 1.66.2.
 new 3f42bd8  gnu: r-ropls: Update to 1.18.6.
 new e8ccb98  gnu: r-flowworkspace: Update to 3.34.1.
 new d1ac643  gnu: r-variancepartition: Update to 1.16.1.

The 61 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm   |  36 -
 gnu/packages/bioinformatics.scm |  18 ++---
 gnu/packages/cran.scm   | 168 +++-
 gnu/packages/statistics.scm |  83 +++-
 4 files changed, 151 insertions(+), 154 deletions(-)

26/61: gnu: r-vcd: Update to 1.4-5.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 831e460610747f14c932c927f58c40b9e1ca530a
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:22 2020 +0100

gnu: r-vcd: Update to 1.4-5.

* gnu/packages/cran.scm (r-vcd): Update to 1.4-5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fd4b14b..60e8014 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3637,14 +3637,14 @@ modeling for empirical income distributions.")
 (define-public r-vcd
   (package
 (name "r-vcd")
-(version "1.4-4")
+(version "1.4-5")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "vcd" version))
(sha256
 (base32
- "1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5"
+ "0pqf1sdp0d60aqc7721hy2zfcp57902by0i28jqbn683dd50c21a"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-colorspace" ,r-colorspace)

17/61: gnu: r-rgooglemaps: Update to 1.4.5.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit af67eba5bf1c4c468b05ae70d8dffe40d8f1d4da
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:10 2020 +0100

gnu: r-rgooglemaps: Update to 1.4.5.1.

* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 02aa367..d2ebabe 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1293,14 +1293,14 @@ coordinates.")
 (define-public r-rgooglemaps
   (package
 (name "r-rgooglemaps")
-(version "1.4.5")
+(version "1.4.5.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "RgoogleMaps" version))
(sha256
 (base32
- "1acf0qc9597apcidjzrpvwhg9ihypr38jigc10jvqn33qbn1i9s7"
+ "1lrbl0nax7rzk460mh6rq9hydahdi3ckxk4kxx3xij29jl3lmijh"
 (properties `((upstream-name . "RgoogleMaps")))
 (build-system r-build-system)
 (propagated-inputs `(("r-png" ,r-png)))

16/61: gnu: r-ranger: Update to 0.12.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 0169d77858c1ab74d500462dcf5c23d9e2b10995
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:03 2020 +0100

gnu: r-ranger: Update to 0.12.1.

* gnu/packages/statistics.scm (r-ranger): Update to 0.12.1.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 4929448..ec2994d 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5385,14 +5385,14 @@ diagnostic tools (@code{ctlcurves} and 
@code{DiscrFact}).")
 (define-public r-ranger
   (package
 (name "r-ranger")
-(version "0.11.2")
+(version "0.12.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "ranger" version))
(sha256
 (base32
- "1sxyzxmjc6lm8wcmq15j6sscnza7aay4mr3dyri2zngx6fa8mb0k"
+ "1vr5akgh388iivrxi0g4pl2npq9dc4cim3ljk4kjf637q058wc7w"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-rcpp" ,r-rcpp)

03/61: gnu: r-caret: Update to 6.0-85.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 62d8020a5e84de9c88172e5c823b3141b4cad665
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 04:41:15 2020 +0100

gnu: r-caret: Update to 6.0-85.

* gnu/packages/cran.scm (r-caret): Update to 6.0-85.
[propagated-inputs]: Add r-proc.
---
 gnu/packages/cran.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f23528e..02aa367 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -18383,14 +18383,14 @@ it may be seen by an animal with less acute vision.")
 (define-public r-caret
   (package
 (name "r-caret")
-(version "6.0-84")
+(version "6.0-85")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "caret" version))
(sha256
 (base32
- "03898irgb70q0p01kq99yb6q6xji0jx4jmj0yxlv8wcwd841r0x1"
+ "0jxbf2zcvbb5s2pnjzg182awjvylc57q7z5plx6gs6gm62zxjafs"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-foreach" ,r-foreach)
@@ -18399,6 +18399,7 @@ it may be seen by an animal with less acute vision.")
("r-modelmetrics" ,r-modelmetrics)
("r-nlme" ,r-nlme)
("r-plyr" ,r-plyr)
+   ("r-proc" ,r-proc)
("r-recipes" ,r-recipes)
("r-reshape2" ,r-reshape2)
("r-withr" ,r-withr)))

04/61: gnu: r-mvtnorm: Update to 1.0-12.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit e05b5da86c89d675eb1210c2cb26870b8eb9d657
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 04:41:56 2020 +0100

gnu: r-mvtnorm: Update to 1.0-12.

* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-12.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
---
 gnu/packages/statistics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 07b486d..d223877 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3592,15 +3592,15 @@ vignettes.")
 (define-public r-mvtnorm
   (package
 (name "r-mvtnorm")
-(version "1.0-11")
+(version "1.0-12")
 (source (origin
   (method url-fetch)
   (uri (cran-uri "mvtnorm" version))
   (sha256
(base32
-"0lkjph661blc1nwfzg9w48a60wvj6ffh4zjwlisvracsx4nn2883"
+"03rfmii9j8x8fjv7hp8qd28z0svl4w0x54k2f4jpwv4qa7079i24"
 (build-system r-build-system)
-(inputs
+(native-inputs
  `(("gfortran" ,gfortran)))
 (home-page "http://mvtnorm.R-forge.R-project.org;)
 (synopsis "Package for multivariate normal and t-distributions")

32/61: gnu: r-bibtex: Update to 0.4.2.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit b329d5f0b294cb9d11fc8c21846d5818886b5c67
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:42:00 2020 +0100

gnu: r-bibtex: Update to 0.4.2.2.

* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 69c45e5..21771c5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5768,14 +5768,14 @@ Python to R they are converted back to R types.")
 (define-public r-bibtex
   (package
 (name "r-bibtex")
-(version "0.4.2.1")
+(version "0.4.2.2")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "bibtex" version))
(sha256
 (base32
- "1ks1w59ldwmfd1sj8ap7smyhf8dhykv7xnwrl8z9xzkcfpv1rbc0"
+ "140hkjzdp3033cvji861rd06z1ixgpnn4n5amygqsmhnixk8ff07"
 (build-system r-build-system)
 (propagated-inputs `(("r-stringr" ,r-stringr)))
 (home-page "https://github.com/romainfrancois/bibtex;)

45/61: gnu: r-umap: Update to 0.2.4.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 82ab1f4ca8260844eb76ffe99ef51de430aebc9d
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:43:14 2020 +0100

gnu: r-umap: Update to 0.2.4.1.

* gnu/packages/cran.scm (r-umap): Update to 0.2.4.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e49d939..fe1d2a5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15346,14 +15346,14 @@ easily.")
 (define-public r-umap
   (package
 (name "r-umap")
-(version "0.2.4.0")
+(version "0.2.4.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "umap" version))
(sha256
 (base32
- "1dzbwq96k5vqr64wk6s26ks4311h570xg6gf0prr4vnn033pqnch"
+ "1pnh3hv8ihiz2nszqp797lkrdhhna2a6mzpizbsk0s9m8cj4wxva"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-openssl" ,r-openssl)

06/61: gnu: r-stringi: Update to 1.4.5.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 800219d569cc3a70dbd15e9a31c3aca40ab31ac3
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:07 2020 +0100

gnu: r-stringi: Update to 1.4.5.

* gnu/packages/statistics.scm (r-stringi): Update to 1.4.5.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index b8a988d..7d24817 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1015,14 +1015,14 @@ solution for sending email, including attachments, from 
within R.")
 (define-public r-stringi
   (package
 (name "r-stringi")
-(version "1.4.3")
+(version "1.4.5")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "stringi" version))
(sha256
 (base32
- "1vbr6g9p1iyzdj7wfw6afyizvnd1a2srfvkl72pq23vhdcwwpkhk"
+ "0gdmdf4i3ik8rcs7af1vlsfnilcmw3z28jx4278rpq2asigps89k"
 (build-system r-build-system)
 (inputs `(("icu4c" ,icu4c)))
 (native-inputs `(("pkg-config" ,pkg-config)))

27/61: gnu: r-ggridges: Update to 0.5.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit e8bcca8c1fd8fdd0cb176a5fbff9abc357435c12
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:30 2020 +0100

gnu: r-ggridges: Update to 0.5.2.

* gnu/packages/cran.scm (r-ggridges): Update to 0.5.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 60e8014..f86091b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3748,14 +3748,14 @@ plotting.  a three dimensional point cloud.")
 (define-public r-ggridges
   (package
 (name "r-ggridges")
-(version "0.5.1")
+(version "0.5.2")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "ggridges" version))
(sha256
 (base32
- "0dhwcpy785ac2ny5bjp284595nnybi3554wd0yffsli0vzf7ry01"
+ "03pz257aw0mkh5k75rby9givkc1ky3n5scvhjhjiz9vry9fpffmh"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-ggplot2" ,r-ggplot2)

18/61: gnu: r-getoptlong: Update to 0.1.8.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit e899ef31c93016f598dfde779c5dfb332432165d
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:17 2020 +0100

gnu: r-getoptlong: Update to 0.1.8.

* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.8.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d2ebabe..9d234fb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1941,14 +1941,14 @@ compare different dendrograms to one another.")
 (define-public r-getoptlong
   (package
 (name "r-getoptlong")
-(version "0.1.7")
+(version "0.1.8")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "GetoptLong" version))
(sha256
 (base32
- "1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr"
+ "1l8xkvyl152bsyvxazsvx2sm1vkygn75x0lsg3sbg7xp6drdn3kc"
 (properties `((upstream-name . "GetoptLong")))
 (build-system r-build-system)
 (inputs

28/61: gnu: r-cli: Update to 2.0.1.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 743b12c24126d1156b7f8c156015d96497fa6b1b
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:41:35 2020 +0100

gnu: r-cli: Update to 2.0.1.

* gnu/packages/cran.scm (r-cli): Update to 2.0.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f86091b..d878ca1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3795,14 +3795,14 @@ plots in @code{ggplot2}.")
 (define-public r-cli
   (package
 (name "r-cli")
-(version "2.0.0")
+(version "2.0.1")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "cli" version))
(sha256
 (base32
- "1gv3zqdipj29ivkw5dsi1qdlra7q4lcrcqvlg9fns7d670yglfki"
+ "0x28i7kj4qndk6mnn99qn9w2nfldv8csjnsn0n8phfnxq5hnmp5y"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-assertthat" ,r-assertthat)

08/61: gnu: r-hms: Update to 0.5.3.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 0d9fed2fe317d2f91c736bbb61d72d1e6c8144b2
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:18 2020 +0100

gnu: r-hms: Update to 0.5.3.

* gnu/packages/statistics.scm (r-hms): Update to 0.5.3.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 085fc2a..f7286d9 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2455,14 +2455,14 @@ were originally a part of the r-devtools package.")
 (define-public r-hms
   (package
 (name "r-hms")
-(version "0.5.2")
+(version "0.5.3")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "hms" version))
(sha256
 (base32
- "0h24dsagn4kcr65arn73mpqapcg002kw4kyxfqyff95j6s6cjifl"
+ "1baki0qw5ijgiflvsdvqj3apg4yanf12vx14kwbqdzk5rz46fasf"
 (build-system r-build-system)
 (propagated-inputs
  `(("r-rlang" ,r-rlang)

21/61: gnu: r-suppdists: Update to 1.1-9.5.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit e931661af8145a443f36b3b7e3db27e6ebb71917
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:40:44 2020 +0100

gnu: r-suppdists: Update to 1.1-9.5.

* gnu/packages/cran.scm (r-suppdists): Update to 1.1-9.5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 31a72c5..c801902 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2552,14 +2552,14 @@ statistics/methods are implemented.")
 (define-public r-suppdists
   (package
 (name "r-suppdists")
-(version "1.1-9.4")
+(version "1.1-9.5")
 (source
  (origin
(method url-fetch)
(uri (cran-uri "SuppDists" version))
(sha256
 (base32
- "1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"
+ "01j6p94m1g363nph2158fq2rmd6z3h5dvcv6aidh2d6syw131xak"
 (properties `((upstream-name . "SuppDists")))
 (build-system r-build-system)
 (home-page "https://cran.r-project.org/web/packages/SuppDists;)

10/61: gnu: r-rsqlite: Update to 2.2.0.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit b210274a8f2de4d65f73827a93a9a7d14fbf
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:30 2020 +0100

gnu: r-rsqlite: Update to 2.2.0.

* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.0.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c366fa5..d681bdd 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2778,13 +2778,13 @@ a column in data frame.")
 (define-public r-rsqlite
   (package
 (name "r-rsqlite")
-(version "2.1.5")
+(version "2.2.0")
 (source (origin
   (method url-fetch)
   (uri (cran-uri "RSQLite" version))
   (sha256
(base32
-"0b1cjnk9g1lrxy0wajfq744qps7fila0xdh5j9chy1vrrwfiwzl0"
+"1m38sj8rwbf3p2lhqabcp7c7djk7s9ng37cz39yxk706v9pi4380"
 (properties `((upstream-name . "RSQLite")))
 (build-system r-build-system)
 (propagated-inputs

01/61: gnu: r-caret: Move to (gnu packages cran).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 8cc9636c5ef1872050a668ef261708ecfe577600
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 04:38:52 2020 +0100

gnu: r-caret: Move to (gnu packages cran).

* gnu/packages/statistics.scm (r-caret): Move variable from here...
* gnu/packages/cran.scm (r-caret): ...to here.
---
 gnu/packages/cran.scm   | 29 +
 gnu/packages/statistics.scm | 29 -
 2 files changed, 29 insertions(+), 29 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8277026..dc40518 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -18380,6 +18380,35 @@ simple, modern C++ library for image processing.")
 it may be seen by an animal with less acute vision.")
 (license license:gpl2+)))
 
+(define-public r-caret
+  (package
+(name "r-caret")
+(version "6.0-84")
+(source
+ (origin
+   (method url-fetch)
+   (uri (cran-uri "caret" version))
+   (sha256
+(base32
+ "03898irgb70q0p01kq99yb6q6xji0jx4jmj0yxlv8wcwd841r0x1"
+(build-system r-build-system)
+(propagated-inputs
+ `(("r-foreach" ,r-foreach)
+   ("r-ggplot2" ,r-ggplot2)
+   ("r-lattice" ,r-lattice)
+   ("r-modelmetrics" ,r-modelmetrics)
+   ("r-nlme" ,r-nlme)
+   ("r-plyr" ,r-plyr)
+   ("r-recipes" ,r-recipes)
+   ("r-reshape2" ,r-reshape2)
+   ("r-withr" ,r-withr)))
+(home-page "https://github.com/topepo/caret;)
+(synopsis "Classification and regression training")
+(description
+ "This package provides misc functions for training and plotting
+classification and regression models.")
+(license license:gpl2+)))
+
 (define-public r-adabag
   (package
 (name "r-adabag")
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index e7fd5bd..07b486d 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -5264,35 +5264,6 @@ Companion to Applied Regression, Third Edition, Sage.")
 to Applied regression, Second Edition, Sage, 2011.")
 (license license:gpl2+)))
 
-(define-public r-caret
-  (package
-(name "r-caret")
-(version "6.0-84")
-(source
- (origin
-   (method url-fetch)
-   (uri (cran-uri "caret" version))
-   (sha256
-(base32
- "03898irgb70q0p01kq99yb6q6xji0jx4jmj0yxlv8wcwd841r0x1"
-(build-system r-build-system)
-(propagated-inputs
- `(("r-foreach" ,r-foreach)
-   ("r-ggplot2" ,r-ggplot2)
-   ("r-lattice" ,r-lattice)
-   ("r-modelmetrics" ,r-modelmetrics)
-   ("r-nlme" ,r-nlme)
-   ("r-plyr" ,r-plyr)
-   ("r-recipes" ,r-recipes)
-   ("r-reshape2" ,r-reshape2)
-   ("r-withr" ,r-withr)))
-(home-page "https://github.com/topepo/caret;)
-(synopsis "Classification and regression training")
-(description
- "This package provides misc functions for training and plotting
-classification and regression models.")
-(license license:gpl2+)))
-
 (define-public r-rcppprogress
   (package
 (name "r-rcppprogress")

02/61: gnu: r-caret: Do not abbreviate "misc".

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 91afb471954410a0e7a287ef65e1409eaf8d50e6
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 04:39:44 2020 +0100

gnu: r-caret: Do not abbreviate "misc".

* gnu/packages/cran.scm (r-caret)[description]: Replace "misc" with
"miscellaneous".
---
 gnu/packages/cran.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index dc40518..f23528e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -18405,7 +18405,7 @@ it may be seen by an animal with less acute vision.")
 (home-page "https://github.com/topepo/caret;)
 (synopsis "Classification and regression training")
 (description
- "This package provides misc functions for training and plotting
+ "This package provides miscellaneous functions for training and plotting
 classification and regression models.")
 (license license:gpl2+)))
 

07/61: gnu: r-bh: Update to 1.72.0-3.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 97e20ade4eb9843d8f0193c1d0e553c9ca67a940
Author: Ricardo Wurmus 
AuthorDate: Thu Jan 16 05:39:13 2020 +0100

gnu: r-bh: Update to 1.72.0-3.

* gnu/packages/statistics.scm (r-bh): Update to 1.72.0-3.
---
 gnu/packages/statistics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7d24817..085fc2a 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1260,13 +1260,13 @@ R/DBMS implementations.")
 (define-public r-bh
   (package
 (name "r-bh")
-(version "1.72.0-2")
+(version "1.72.0-3")
 (source (origin
   (method url-fetch)
   (uri (cran-uri "BH" version))
   (sha256
(base32
-"0y1cxnzdajcdsc9jlaby53253hril65h496wval08qlxsqnfc3ia"
+"1ay8vb6i730lipg8b8g3893vqglhw2kqpc29lwdrxdkb66iw33l8"
 (build-system r-build-system)
 (home-page "https://github.com/eddelbuettel/bh;)
 (synopsis "R package providing subset of Boost headers")

branch master updated: gnu: icecat: Fix support for ffmpeg codecs.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

mhw pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
 new 429c828  gnu: icecat: Fix support for ffmpeg codecs.
429c828 is described below

commit 429c8284d232c3f9fbe3dc87a3da323f3a864c03
Author: Mark H Weaver 
AuthorDate: Wed Jan 15 20:26:46 2020 -0500

gnu: icecat: Fix support for ffmpeg codecs.

Fixes .  Thanks to Jakub Kądziołka
 and Amin Bandali  for their
helpful observations and suggestions.

This is a followup to commit 8e5567195f5d29301d571612085b5afdb460619d.

* gnu/packages/gnuzilla.scm (icecat)[inputs]: Add shared-mime-info.
[arguments]: Add elf and binary I/O modules to #:modules.  Add code to
the 'fix-ffmpeg-runtime-linker' phase that sets the sandbox read-path
whitelist to include libavcodec's RUNPATH, as well as shared-mime-info.
---
 gnu/packages/gnuzilla.scm | 37 +++--
 1 file changed, 31 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm
index 62b4390..0797cb0 100644
--- a/gnu/packages/gnuzilla.scm
+++ b/gnu/packages/gnuzilla.scm
@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013, 2015 Andreas Enge 
 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès 

-;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Mark H Weaver 

+;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Mark H Weaver 

 ;;; Copyright © 2015 Sou Bunnbu 
 ;;; Copyright © 2016, 2017, 2018, 2019 Efraim Flashner 
 ;;; Copyright © 2016 Alex Griffin 
@@ -756,6 +756,7 @@ from forcing GEXP-PROMISE."
;;   and related comments in the 'remove-bundled-libraries' phase.
;; UNBUNDLE-ME! ("nspr" ,nspr)
;; UNBUNDLE-ME! ("nss" ,nss)
+   ("shared-mime-info" ,shared-mime-info)
("sqlite" ,sqlite)
("startup-notification" ,startup-notification)
("unzip" ,unzip)
@@ -882,6 +883,10 @@ from forcing GEXP-PROMISE."
   (ice-9 match)
   (srfi srfi-34)
   (srfi srfi-35)
+  (rnrs bytevectors)
+  (rnrs io ports)
+  (guix elf)
+  (guix build gremlin)
   ,@%gnu-build-system-modules)
#:phases
(modify-phases %standard-phases
@@ -966,11 +971,31 @@ from forcing GEXP-PROMISE."
  #t))
  (add-after 'link-libxul-with-libraries 'fix-ffmpeg-runtime-linker
(lambda* (#:key inputs #:allow-other-keys)
- ;; Arrange to load libavcodec.so by its absolute file name.
- (substitute* "dom/media/platforms/ffmpeg/FFmpegRuntimeLinker.cpp"
-   (("libavcodec\\.so")
-(string-append (assoc-ref inputs "ffmpeg") 
"/lib/libavcodec.so")))
- #t))
+ (let* ((ffmpeg (assoc-ref inputs "ffmpeg"))
+(libavcodec (string-append ffmpeg "/lib/libavcodec.so")))
+   ;; Arrange to load libavcodec.so by its absolute file name.
+   (substitute* 
"dom/media/platforms/ffmpeg/FFmpegRuntimeLinker.cpp"
+ (("libavcodec\\.so")
+  libavcodec))
+   ;; Populate the sandbox read-path whitelist as needed by ffmpeg.
+   (let* ((mime-info (assoc-ref inputs "shared-mime-info"))
+  (libavcodec-runpath (call-with-input-file libavcodec
+(compose elf-dynamic-info-runpath
+ elf-dynamic-info
+ parse-elf
+ get-bytevector-all)))
+  (whitelist (cons (string-append mime-info "/share/mime/")
+   (map (lambda (dir)
+  (string-append dir "/"))
+libavcodec-runpath)))
+  (whitelist-string (string-join whitelist ","))
+  (port (open-file "browser/app/profile/icecat.js" "a")))
+ (format #t "setting 
'security.sandbox.content.read_path_whitelist' to '~a'~%"
+ whitelist-string)
+ (format port 
"~%pref(\"security.sandbox.content.read_path_whitelist\", ~S);~%"
+ whitelist-string)
+ (close-output-port port))
+   #t)))
  (replace 'bootstrap
(lambda _
  (invoke "sh" "-c" "autoconf old-configure.in > old-configure")

branch master updated: gnu: red-eclipse: Update to 2.0.0.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

kkebreau pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
 new 7fa9a68  gnu: red-eclipse: Update to 2.0.0.
7fa9a68 is described below

commit 7fa9a685a29ef1440ccbaf15b5de4142d8d82aec
Author: Kei Kebreau 
AuthorDate: Sun Jan 12 20:32:40 2020 -0500

gnu: red-eclipse: Update to 2.0.0.

* gnu/packages/games.scm (red-eclipse): Update to 2.0.0.
[source]: Remove obsolete patch, and fetch submodules by making "recursive?"
true.
[arguments]: Remove "unpack-data" phase and adjust
"add-store-data-package-path-as-default" phase.
[inputs]: Add freetype and remove data-sources.
* gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch: Delete 
file.
* gnu/local.mk (dist_patch_DATA): Delete file.
---
 gnu/local.mk   |  1 -
 gnu/packages/games.scm | 96 +++---
 .../red-eclipse-remove-gamma-name-hack.patch   | 52 
 3 files changed, 12 insertions(+), 137 deletions(-)

diff --git a/gnu/local.mk b/gnu/local.mk
index f5c73ba..e77af87 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1346,7 +1346,6 @@ dist_patch_DATA = 
\
   %D%/packages/patches/rct-add-missing-headers.patch   \
   %D%/packages/patches/readline-link-ncurses.patch \
   %D%/packages/patches/readline-6.2-CVE-2014-2524.patch\
-  %D%/packages/patches/red-eclipse-remove-gamma-name-hack.patch\
   %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch \
   %D%/packages/patches/ri-li-modernize_cpp.patch   \
   %D%/packages/patches/ripperx-missing-file.patch  \
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 975658d..da6c6fd 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -3189,45 +3189,8 @@ http://lavachat.symlynx.com/unix/;)
 (license license:gpl2+)))
 
 (define-public red-eclipse
-  (let ((release "1.6.0")
-(revision 0)
-(data-sources
- '(("acerspyro" "12b0bngl7hlxw4iwdbn99jp081yl6z1ic0s788nm349drbr2pck8")
-   ("actors" "0x7qqx67679q6ark9zz02skwhzgabid69kwi6zmhfpfgicn4927r")
-   ("appleflap" "08xslwqfqz3j4m03pv5ry2gdzj5k2ns51z8n6sln3sa94i9x8qkm")
-   ("blendbrush" 
"18zf5i2ax4p14x4c9nhk9fq6l1xgbxw62gm72vx59vbfdpjrw3cg")
-   ("caustics" "172fxwx7kbz5nmbjq98kr52ips505wb99fibgnpg8cj02syrya8k")
-   ("crosshairs" 
"14w8ysqzdsx9bzpfbl700jzngbh14rdghhjdf6zd6jlkvrl6754r")
-   ("dziq" "056imqszvp90j7cgz52ly0f31px64gsrmvm9k2c78ldbx87jnhc3")
-   ("elyvisions" 
"1bsgr0gr7njydj8fqclh0a27lrsyic3xfd5a4vwggw7g54azpgk2")
-   ("fonts" "00ibisza1qci0ghf2rynyf28l6r3nqhfzjf80k6gg76q4v7p1myx")
-   ("freezurbern" 
"07l9ldk9b82f12c13wcg5xxdf15bw0yjxk3vvk8v3ygrl2mwksyr")
-   ("john" "1jdmwkrdi5b9pivkm22rxhmkk1db9dx6l54wzcc23cvdz04ij93k")
-   ("jojo" "0f7kjy43fbk9kw8fip6bbw4gn3pryh0fndlahjfkaysrx98krdj3")
-   ("jwin" "0nc8dndnpqk2ad6316a8k6kgzsrkpwvk8s4gyh7aqfi4axfclril")
-   ("luckystrike" 
"04jiipqahphmvz5cd74dygr62dlvv6l4iglb8hzh4pp8frhls8bq")
-   ("maps" "0an46ipjvw4h0nxvb6qvnzp1cdkzlkiinqz4zh9lmxy1ds0gclim")
-   ("mayhem" "15k10imm2wr6c6fq35n4r99k7kz7n9zdnjlw6dmdq6fba67i6sbc")
-   ("mikeplus64" 
"0v4wiiivm3829j4phlavy22n4c6k6ib9ixxpdz7r6ysg5cdkaw33")
-   ("misc" "13rfgwrlfhflz6inbkg3fypyf8im0m49sw112b17qrw2zgp8i1rz")
-   ("nieb" "0z0h9jdn2gkkjil3vsvwidb1p2k09pi5n3wjxza12hhvqmcs7q8f")
-   ("nobiax" "08bfp4q6gbfis18bp1h4d0hqssk79jc4fhyjxnv21dbam4v4mnkn")
-   ("particles" "1vsx3fgg19xggxfhz3vlrh6nqhmw7kl9kmxrvb2j84blp00vd6z2")
-   ("philipk" "14irscg80607i5k5l2ci0n9nwibvda2f3xsykgv96d0vldrp5n5a")
-   ("projectiles" 
"09bnfsrywirwgjm6d7ff5nicx6w6b7w9568x9pb5q0ncaps3l85s")
-   ("props" "1dlabbprlkif8af3daf9nbgcwgxiymvj0yiphqhlri8ylfy2vpz4")
-   ("skyboxes" "14bi3md5y47cvb9ybipdvksz40gqsqw2r0lh3zzqb4acq367w18y")
-   ("snipergoth" 
"0m8rvvy5n8n9pm0b5cqvzsxsw51mqk8m7s1h3qc849b38isliwq2")
-   ("sounds" "0ivf3w5bphz5pzzx6kwcb67vbly1l19cgv3s0cyp8n87afiqj5rd")
-   ("textures" "0qdmgx7zbcqnb9rrga2izr93p5inirczhddfxs504rsnv0v8vyxm")
-   ("torley" "05ppyhghq859cbbxzj3dnl9fcx3ghy04ds1pylypwg2hsxzbjwcd")
-   ("trak" "0g3vq86q91a3syli38lwc8ca4ychfwsmmqf85kqzfzyd627ybclm")
-   ("ulukai" "0asa5fz400impklcg6dy2f7jiaqfc1sn1c36fpg8jd01gw66lw93")
-   ("unnamed" "0rz5683j7sfwkcycfypbv4b0ihp0qwn9rzskfsabwc1s5g324917")
-   ("vanities" "13f18783rc8cjf22p61zr8m5g1migzlx05fzl8xnbjdkqq4cdyix")
-   ("vegetation" 
"1y5d97nfmvax7y4fr0y5v0c8zb1ajkqwx76kjd4qc9n4spdsi5sc")
-   ("weapons" "103g1dhxv5ffz4ddg2xcbshbgv9606chsbas3pzk6h9ybqsyjrqh")
-   ("wicked" 

07/07: clojure-utils: Avoid use of '@@'.

[guix-commits]

civodul pushed a commit to branch master
in repository guix.

commit 65b510bbc4f2a9ce5bfe3355e6006e9d08f14532
Author: Ludovic Courtès 
AuthorDate: Wed Jan 15 23:38:35 2020 +0100

clojure-utils: Avoid use of '@@'.

* guix/build/clojure-utils.scm (%doc-regex): Avoid @@, which doesn't
work on Guile 3.
(file-sans-extension): Likewise.
---
 guix/build/clojure-utils.scm | 15 +++
 1 file changed, 7 insertions(+), 8 deletions(-)

diff --git a/guix/build/clojure-utils.scm b/guix/build/clojure-utils.scm
index 9f7334b..a9ffad3 100644
--- a/guix/build/clojure-utils.scm
+++ b/guix/build/clojure-utils.scm
@@ -69,10 +69,7 @@
 
 (define-with-docs %doc-regex
   "Default regex for matching the base name of top-level documentation files."
-  (format #f
-  "(~a)|(\\.(html|markdown|md|txt)$)"
-  (@@ (guix build guile-build-system)
-  %documentation-file-regexp)))
+  "^(README.*|.*\\.html|.*\\.org|.*\\.md|\\.markdown|\\.txt)$")
 
 (define* (install-doc #:key
   doc-dirs
@@ -185,10 +182,12 @@ canonicalized."
  (apply find-files "./" args
 
 ;;; FIXME: should be moved to (guix build utils)
-(define-with-docs file-sans-extension
-  "Strip extension from path, if any."
-  (@@ (guix build guile-build-system)
-  file-sans-extension))
+(define (file-sans-extension file);TODO: factorize
+  "Return the substring of FILE without its extension, if any."
+  (let ((dot (string-rindex file #\.)))
+(if dot
+(substring file 0 dot)
+file)))
 
 (define (relative-path->clojure-lib-string path)
   "Convert PATH to a clojure library string."

03/07: gnu: Add rygel.

[guix-commits]

civodul pushed a commit to branch master
in repository guix.

commit 89af09020ad6e1fde509601cd242713fe3ba7178
Author: Raghav Gururajan 
AuthorDate: Tue Jan 14 16:53:34 2020 -0500

gnu: Add rygel.

* gnu/packages/gnome.scm (rygel): New variable.

Signed-off-by: Ludovic Courtès 
---
 gnu/packages/gnome.scm | 50 ++
 1 file changed, 50 insertions(+)

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 06aafa7..b0f34fe 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -582,6 +582,56 @@ sharing to the masses.")
(home-page "https://gitlab.gnome.org/GNOME/gnome-user-share;)
(license license:gpl2+)))
 
+(define-public rygel
+  (package
+(name "rygel")
+(version "0.38.3")
+(source (origin
+  (method url-fetch)
+  (uri (string-append "mirror://gnome/sources/" name "/"
+  (version-major+minor version) "/"
+  name "-" version ".tar.xz"))
+  (sha256
+   (base32
+"003xficqb08r1dgid20i7cn889lbfwrglpx78rjd5nkvgxbimhh8"
+(build-system gnu-build-system)
+(native-inputs
+ `(("gettext" ,gettext-minimal)
+   ("gobject-introspection" ,gobject-introspection)
+   ("gtk-doc" ,gtk-doc)
+   ("pkg-config" ,pkg-config)
+   ("vala" ,vala)))
+(inputs
+ `(("gdk-pixbuf" ,gdk-pixbuf)
+   ("gssdp" ,gssdp)
+   ("gstreamer" ,gstreamer)
+   ("gst-plugins-base" ,gst-plugins-base)
+   ("gtk+" ,gtk+)
+   ("gupnp" ,gupnp)
+   ("gupnp-av" ,gupnp-av)
+   ("gupnp-dlna" ,gupnp-dlna)
+   ("libgee" ,libgee)
+   ("libmediaart" ,libmediaart)
+   ("libsoup" ,libsoup)
+   ("libxslt" ,libxslt)
+   ("libunistring" ,libunistring)
+   ("tracker" ,tracker)))
+(synopsis "Share audio, video, and pictures with other devices")
+(description
+ "Rygel is a home media solution (@dfn{UPnP AV MediaServer and
+MediaRenderer}) for GNOME that allows you to easily share audio, video, and
+pictures, and to control a media player on your home network.
+
+Rygel achieves interoperability with other devices by trying to conform to the
+strict requirements of DLNA and by converting media on-the-fly to formats that
+client devices can handle.")
+(home-page "https://wiki.gnome.org/Projects/Rygel;)
+(license (list
+  ;; For logo (data/icons/*).
+  license:cc-by-sa3.0
+  ;; For all others.
+  license:lgpl2.1+
+
 (define-public libnma
   (package
(name "libnma")

05/07: gnu: Add rcm.

[guix-commits]

civodul pushed a commit to branch master
in repository guix.

commit 305c908aac9ed3ec1be9361cb998d6a25c15fded
Author: Josh Holland 
AuthorDate: Thu May 9 18:59:16 2019 +0100

gnu: Add rcm.

* gnu/packages/rcm.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add rcm.scm.

Signed-off-by: Ludovic Courtès 
---
 gnu/local.mk |  1 +
 gnu/packages/rcm.scm | 62 
 2 files changed, 63 insertions(+)

diff --git a/gnu/local.mk b/gnu/local.mk
index 68e9592..f5c73ba 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -426,6 +426,7 @@ GNU_SYSTEM_MODULES =\
   %D%/packages/ragel.scm   \
   %D%/packages/rails.scm   \
   %D%/packages/ratpoison.scm   \
+  %D%/packages/rcm.scm \
   %D%/packages/rdesktop.scm\
   %D%/packages/rdf.scm \
   %D%/packages/re2c.scm\
diff --git a/gnu/packages/rcm.scm b/gnu/packages/rcm.scm
new file mode 100644
index 000..c61626d
--- /dev/null
+++ b/gnu/packages/rcm.scm
@@ -0,0 +1,62 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2019 Josh Holland 
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see .
+
+(define-module (gnu packages rcm)
+  #:use-module (guix packages)
+  #:use-module (guix download)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix licenses)
+  #:use-module (gnu packages python-xyz)
+  #:use-module (gnu packages perl))
+
+(define-public rcm
+  (package
+(name "rcm")
+(version "1.3.3")
+(source (origin
+  (method url-fetch)
+  (uri (string-append "https://thoughtbot.github.io/rcm/dist/rcm-;
+  version ".tar.gz"))
+  (sha256
+   (base32 
"1bqk7rrp1ckzvsvl9wghsr77m8xl3a7yc5gqdsisz492dx2j8mck"
+(build-system gnu-build-system)
+(arguments '(#:phases
+ (modify-phases %standard-phases
+   (add-after 'patch-source-shebangs 'patch-tests
+ (lambda _
+   (substitute* '("test/rcrc-tilde.t"
+  "test/rcdn-hooks-run-in-order.t"
+  "test/rcup-hooks-run-in-order.t")
+ (("/bin/sh") (which "sh")))
+   (substitute* "test/rcup-hooks.t"
+ (("/usr/bin/env") (which "env")))
+   #t)))
+  #:parallel-tests? #f))
+(native-inputs `(("perl" ,perl)
+ ("python-cram" ,python-cram)))
+(synopsis "Management suite for dotfiles")
+(description "The rcm suite of tools is for managing dotfiles directories. 
 This is
+a directory containing all the @code{.*rc} files in your home directory
+(@code{.zshrc}, @code{.vimrc}, and so on). These files have gone by many
+names in history, such as “rc files” because they typically end in rc
+or “dotfiles” because they begin with a period.  This suite is useful
+for committing your rc files to a central repository to share, but it also
+scales to a more complex situation such as multiple source directories
+shared between computers with some host-specific or task-specific files.")
+(license bsd-3)
+(home-page "https://github.com/thoughtbot/rcm;)))

04/07: gnu: Add sushi.

[guix-commits]

civodul pushed a commit to branch master
in repository guix.

commit 04b201bb0feacd2997a66b73a574160f0b32697b
Author: Raghav Gururajan 
AuthorDate: Tue Jan 14 17:18:28 2020 -0500

gnu: Add sushi.

* gnu/packages/gnome.scm (sushi): New variable.

Signed-off-by: Ludovic Courtès 
---
 gnu/packages/gnome.scm | 54 ++
 1 file changed, 54 insertions(+)

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index b0f34fe..a6a8307 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -582,6 +582,60 @@ sharing to the masses.")
(home-page "https://gitlab.gnome.org/GNOME/gnome-user-share;)
(license license:gpl2+)))
 
+(define-public sushi
+  (package
+(name "sushi")
+(version "3.32.1")
+(source (origin
+  (method url-fetch)
+  (uri (string-append "mirror://gnome/sources/" name "/"
+  (version-major+minor version) "/"
+  name "-" version ".tar.xz"))
+  (sha256
+   (base32
+"02idvqjk76lii9xyg3b1yz4rw721709bdm5j8ikjym6amcghl0aj"
+(build-system meson-build-system)
+(arguments
+ `(#:glib-or-gtk? #t
+   #:phases
+   (modify-phases %standard-phases
+ (add-after 'glib-or-gtk-wrap 'wrap-typelib
+   (lambda* (#:key outputs #:allow-other-keys)
+ (let ((prog (string-append (assoc-ref outputs "out")
+"/bin/sushi")))
+   ;; Put existing typelibs before sushi's deps, so as to correctly
+   ;; infer gdk-pixbuf
+   (wrap-program prog
+ `("GI_TYPELIB_PATH" suffix (,(getenv "GI_TYPELIB_PATH"
+   #t))
+(native-inputs
+ `(("glib:bin" ,glib "bin")
+   ("gettext" ,gettext-minimal)
+   ("gobject-introspection" ,gobject-introspection)
+   ("pkg-config" ,pkg-config)))
+(inputs
+ `(("clutter" ,clutter)
+   ("clutter-gst" ,clutter-gst)
+   ("clutter-gtk" ,clutter-gtk)
+   ("evince" ,evince) ; For file previewing.
+   ("freetype" ,freetype)
+   ("gdk-pixbuf" ,gdk-pixbuf)
+   ("gjs" ,gjs)
+   ("gst-plugins-base" ,gst-plugins-base)
+   ("gstreamer" ,gstreamer)
+   ("gtksourceview" ,gtksourceview-3)
+   ("harfbuzz" ,harfbuzz)
+   ("libepoxy" ,libepoxy)
+   ("libmusicbrainz" ,libmusicbrainz)
+   ("libxml2" ,libxml2)
+   ("neon" ,neon)
+   ("webkitgtk" ,webkitgtk)))
+(synopsis "File previewer for the GNOME desktop")
+(description "Sushi is a DBus-activated service that allows applications to
+preview files on the GNOME desktop.")
+(home-page "https://gitlab.gnome.org/GNOME/sushi;)
+(license license:gpl2+)))
+
 (define-public rygel
   (package
 (name "rygel")

02/07: gnu: Add libnma.

[guix-commits]

civodul pushed a commit to branch master
in repository guix.

commit 47e8709369b80e728f832207a83b61fcc789bb21
Author: Raghav Gururajan 
AuthorDate: Sun Jan 12 15:23:19 2020 -0500

gnu: Add libnma.

* gnu/packages/gnome.scm (libnma): New variable.

Co-authored-by: Ludovic Courtès 
---
 gnu/packages/gnome.scm | 38 ++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index a238dab..06aafa7 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -582,6 +582,44 @@ sharing to the masses.")
(home-page "https://gitlab.gnome.org/GNOME/gnome-user-share;)
(license license:gpl2+)))
 
+(define-public libnma
+  (package
+   (name "libnma")
+   (version "1.8.26")
+   (source (origin
+(method url-fetch)
+(uri (string-append "mirror://gnome/sources/" name "/"
+(version-major+minor version) "/"
+name "-" version ".tar.xz"))
+(sha256
+ (base32
+  "1w9lld38risnk1krknfwln24kabdxnj274pyz4jhndphwigrshaf"
+   (build-system meson-build-system)
+   (arguments
+`(#:glib-or-gtk? #t))
+   (native-inputs
+`(("gettext" ,gettext-minimal)
+  ("glib:bin" ,glib "bin")
+  ("gtk-doc" ,gtk-doc)
+  ("gobject-introspection" ,gobject-introspection)
+  ("pkg-config" ,pkg-config)))
+   (inputs
+`(("adwaita-icon-theme" ,adwaita-icon-theme)
+  ("gcr" ,gcr)
+  ("gtk+" ,gtk+)
+  ("iso-codes" ,iso-codes)
+  ("mobile-broadband-provider-info" ,mobile-broadband-provider-info)
+  ("network-manager" ,network-manager)))
+   (synopsis "Network Manager's applet library")
+   (description "Libnma is an applet library for Network Manager.  It was
+initially part of network-manager-applet and has now become a separate
+project.")
+   (home-page "https://gitlab.gnome.org/GNOME/libnma;)
+
+   ;; Some files carry the "GPL-2.0+" SPDX identifier while others say
+   ;; "LGPL-2.1+".
+   (license license:gpl2+)))
+
 (define-public gnome-menus
   (package
 (name "gnome-menus")

01/07: gnu: Add liquid-dsp.

[guix-commits]

civodul pushed a commit to branch master
in repository guix.

commit bcc8a8fd1e3ac64e096e8b9495e02ad6830a8e41
Author: Christopher Howard 
AuthorDate: Fri Jan 10 21:19:24 2020 -0900

gnu: Add liquid-dsp.

* gnu/packages/sdr.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès 
---
 gnu/local.mk |  1 +
 gnu/packages/sdr.scm | 58 
 2 files changed, 59 insertions(+)

diff --git a/gnu/local.mk b/gnu/local.mk
index cb46ee7..68e9592 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -449,6 +449,7 @@ GNU_SYSTEM_MODULES =\
   %D%/packages/scsi.scm\
   %D%/packages/sdcc.scm\
   %D%/packages/sdl.scm \
+  %D%/packages/sdr.scm \
   %D%/packages/search.scm  \
   %D%/packages/security-token.scm  \
   %D%/packages/selinux.scm \
diff --git a/gnu/packages/sdr.scm b/gnu/packages/sdr.scm
new file mode 100644
index 000..f6c9050
--- /dev/null
+++ b/gnu/packages/sdr.scm
@@ -0,0 +1,58 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2019 Christopher Howard 
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see .
+
+(define-module (gnu packages sdr)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages)
+  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix build-system gnu)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages algebra)
+  #:use-module (gnu packages autotools))
+
+(define-public liquid-dsp
+  (package
+(name "liquid-dsp")
+(version "1.3.2")
+(source
+ (origin (method git-fetch)
+ (uri (git-reference
+   (url "https://github.com/jgaeddert/liquid-dsp.git;)
+   (commit (string-append "v" version
+ (file-name (git-file-name name version))
+ (sha256
+  (base32 
"1n6dbg13q8ga5qhg1yiszwly4jj0rxqr6f1xwm9waaly5z493xsd"
+(build-system gnu-build-system)
+(native-inputs
+ `(("autoconf" ,autoconf)))
+(inputs
+ `(("fftw" ,fftw)
+   ("fftwf" ,fftwf)))
+(home-page "https://liquidsdr.org;)
+(synopsis "Signal processing library for software-defined radios")
+(description
+ "Liquid DSP is a @dfn{digital signal processing} (DSP) library designed
+specifically for software-defined radios on embedded platforms.  The aim is to
+provide a lightweight DSP library that does not rely on a myriad of external
+dependencies or proprietary and otherwise cumbersome frameworks.  All signal
+processing elements are designed to be flexible, scalable, and dynamic,
+including filters, filter design, oscillators, modems, synchronizers, complex
+mathematical operations, and much more.")
+(license license:expat)))

branch master updated (fcc579e -> 65b510b)

[guix-commits]

civodul pushed a change to branch master
in repository guix.

from fcc579e  gnu: emacs-telega: Update to 0.5.4-4.
 new bcc8a8f  gnu: Add liquid-dsp.
 new 47e8709  gnu: Add libnma.
 new 89af090  gnu: Add rygel.
 new 04b201b  gnu: Add sushi.
 new 305c908  gnu: Add rcm.
 new 0aa6b38  serialize: Export 'dump-port*'.
 new 65b510b  clojure-utils: Avoid use of '@@'.

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/local.mk |   2 +
 gnu/packages/gnome.scm   | 142 +++
 gnu/packages/rcm.scm |  62 +++
 gnu/packages/sdr.scm |  58 ++
 guix/build/clojure-utils.scm |  15 +++--
 guix/scripts/challenge.scm   |   7 +--
 guix/serialization.scm   |   3 +-
 7 files changed, 275 insertions(+), 14 deletions(-)
 create mode 100644 gnu/packages/rcm.scm
 create mode 100644 gnu/packages/sdr.scm

06/07: serialize: Export 'dump-port*'.

[guix-commits]

civodul pushed a commit to branch master
in repository guix.

commit 0aa6b3869584dba5916039b8e71b6532463e42ab
Author: Ludovic Courtès 
AuthorDate: Wed Jan 15 23:34:46 2020 +0100

serialize: Export 'dump-port*'.

* guix/serialization.scm (dump): Export as 'dump-port*'.
* guix/scripts/challenge.scm (dump-port*): Remove.
---
 guix/scripts/challenge.scm | 7 ++-
 guix/serialization.scm | 3 ++-
 2 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/guix/scripts/challenge.scm b/guix/scripts/challenge.scm
index ebeebd5..65e2427 100644
--- a/guix/scripts/challenge.scm
+++ b/guix/scripts/challenge.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2017, 2019 Ludovic Courtès 
+;;; Copyright © 2015, 2016, 2017, 2019, 2020 Ludovic Courtès 
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -25,7 +25,7 @@
   #:use-module (guix monads)
   #:use-module (guix base32)
   #:use-module (guix packages)
-  #:use-module (guix progress)
+  #:use-module ((guix progress) #:hide (dump-port*))
   #:use-module (guix serialization)
   #:use-module (guix scripts substitute)
   #:use-module (rnrs bytevectors)
@@ -193,9 +193,6 @@ taken since we do not import the archives."
 ;;; Reporting.
 ;;;
 
-(define dump-port*;FIXME: deduplicate
-  (@@ (guix serialization) dump))
-
 (define (port-sha256* port size)
   ;; Like 'port-sha256', but limited to SIZE bytes.
   (let-values (((out get) (open-sha256-port)))
diff --git a/guix/serialization.scm b/guix/serialization.scm
index f793feb..9452303 100644
--- a/guix/serialization.scm
+++ b/guix/serialization.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès 

+;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic 
Courtès 
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -36,6 +36,7 @@
 write-string-pairs
 write-store-path read-store-path
 write-store-path-list read-store-path-list
+(dump . dump-port*)
 
 
 nar-error?

branch master updated: gnu: emacs-telega: Update to 0.5.4-4.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

brettgilio pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
 new fcc579e  gnu: emacs-telega: Update to 0.5.4-4.
fcc579e is described below

commit fcc579e235197e0caec22995a70470545f268607
Author: Brett Gilio 
AuthorDate: Wed Jan 15 16:21:55 2020 -0600

gnu: emacs-telega: Update to 0.5.4-4.

* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.4-4.
[propagated-inputs]: Add emacs-company to provide completions in 
telega-based
buffers.
---
 gnu/packages/emacs-xyz.scm | 7 ---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index f910883..899a1d8 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -20422,8 +20422,8 @@ fish-completion.  It can be used in both Eshell and M-x 
shell.")
   ;; This package has versions newer than indicated on MELPA.
   ;; Get the current version from `telega-version` in telega.el.
   ;; or by running M-x telega-version.
-  (let ((commit "4497a3c19d9806eb9edfe13d326d6d9cbb895f64")
-   (revision "3")
+  (let ((commit "69565cc4de72e28148c8041de8930a122a39b800")
+   (revision "4")
(version "0.5.4"))
 (package
   (name "emacs-telega")
@@ -20436,7 +20436,7 @@ fish-completion.  It can be used in both Eshell and M-x 
shell.")
(commit commit)))
  (sha256
   (base32
-   "1g0gbbgs8rbcip6kqjxdmnsjlq0ixgknb0qcda7siaha9gd7fjh2"))
+   "0blvj07f1sbdmp68qwlwgnhnv42ib0mjai5ndf8scbi12drn4rmk"))
  (file-name (git-file-name name version
   (build-system gnu-build-system)
   (arguments
@@ -20523,6 +20523,7 @@ fish-completion.  It can be used in both Eshell and M-x 
shell.")
`(("ffmpeg" ,ffmpeg))) ; mp4/gif support.
   (propagated-inputs
`(("emacs-visual-fill-column" ,emacs-visual-fill-column)
+ ("emacs-company" ,emacs-company)
  ("libwebp" ,libwebp))) ; sticker support.
   (native-inputs
`(("tdlib" ,tdlib)

02/02: talks: Add BlueHats 2019 talk.

[Ludovic Court�]

civodul pushed a commit to branch master
in repository maintenance.

commit 885e217618340c2e6402080e344f50825e9c9be0
Author: zimoun 
AuthorDate: Fri Dec 20 20:15:16 2019 +0100

talks: Add BlueHats 2019 talk.

* talks/bluehats-2019: New directory.

Signed-off-by: Ludovic Courtès 
---
 .gitignore |   8 +
 talks/bluehats-2019/images/Guix-white.pdf  |   1 +
 talks/bluehats-2019/images/big-picture-3.pdf   |   1 +
 talks/bluehats-2019/images/diderot_u-paris.png | Bin 0 -> 2260 bytes
 talks/bluehats-2019/images/diderot_u-paris_bis.png | Bin 0 -> 2130 bytes
 talks/bluehats-2019/images/guix-refcard.pdf|   1 +
 .../images/guixhpc-logo-transparent.pdf|   1 +
 .../images/software-heritage-logo-title-white.pdf  |   1 +
 talks/bluehats-2019/outline|  62 +++
 talks/bluehats-2019/talk.20191211.pdf  | Bin 0 -> 468454 bytes
 talks/bluehats-2019/talk.tex   | 440 +
 11 files changed, 515 insertions(+)

diff --git a/.gitignore b/.gitignore
index 07b7f65..d290e5f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -186,3 +186,11 @@
 /talks/jcad-2019/talk.snm
 /talks/jcad-2019/talk.toc
 /talks/jcad-2019/talk.vrb
+/talks/bluehats-2019/talk.aux
+/talks/bluehats-2019/talk.log
+/talks/bluehats-2019/talk.nav
+/talks/bluehats-2019/talk.out
+/talks/bluehats-2019/talk.pdf
+/talks/bluehats-2019/talk.snm
+/talks/bluehats-2019/talk.toc
+/talks/bluehats-2019/talk.vrb
diff --git a/talks/bluehats-2019/images/Guix-white.pdf 
b/talks/bluehats-2019/images/Guix-white.pdf
new file mode 12
index 000..288a029
--- /dev/null
+++ b/talks/bluehats-2019/images/Guix-white.pdf
@@ -0,0 +1 @@
+../../fosdem-2019/minimalist/images/Guix-white.pdf
\ No newline at end of file
diff --git a/talks/bluehats-2019/images/big-picture-3.pdf 
b/talks/bluehats-2019/images/big-picture-3.pdf
new file mode 12
index 000..b8d0c4f
--- /dev/null
+++ b/talks/bluehats-2019/images/big-picture-3.pdf
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/big-picture-3.pdf
\ No newline at end of file
diff --git a/talks/bluehats-2019/images/diderot_u-paris.png 
b/talks/bluehats-2019/images/diderot_u-paris.png
new file mode 100644
index 000..3eaf755
Binary files /dev/null and b/talks/bluehats-2019/images/diderot_u-paris.png 
differ
diff --git a/talks/bluehats-2019/images/diderot_u-paris_bis.png 
b/talks/bluehats-2019/images/diderot_u-paris_bis.png
new file mode 100644
index 000..841d735
Binary files /dev/null and b/talks/bluehats-2019/images/diderot_u-paris_bis.png 
differ
diff --git a/talks/bluehats-2019/images/guix-refcard.pdf 
b/talks/bluehats-2019/images/guix-refcard.pdf
new file mode 12
index 000..560fc1a
--- /dev/null
+++ b/talks/bluehats-2019/images/guix-refcard.pdf
@@ -0,0 +1 @@
+../../fosdem-2019/minimalist/images/guix-refcard.pdf
\ No newline at end of file
diff --git a/talks/bluehats-2019/images/guixhpc-logo-transparent.pdf 
b/talks/bluehats-2019/images/guixhpc-logo-transparent.pdf
new file mode 12
index 000..9976a7f
--- /dev/null
+++ b/talks/bluehats-2019/images/guixhpc-logo-transparent.pdf
@@ -0,0 +1 @@
+../../fosdem-2018/hpc/images/guixhpc-logo-transparent.pdf
\ No newline at end of file
diff --git a/talks/bluehats-2019/images/software-heritage-logo-title-white.pdf 
b/talks/bluehats-2019/images/software-heritage-logo-title-white.pdf
new file mode 12
index 000..0c5148d
--- /dev/null
+++ b/talks/bluehats-2019/images/software-heritage-logo-title-white.pdf
@@ -0,0 +1 @@
+../../aramis-2019/images/software-heritage-logo-title-white.pdf
\ No newline at end of file
diff --git a/talks/bluehats-2019/outline b/talks/bluehats-2019/outline
new file mode 100644
index 000..dea487d
--- /dev/null
+++ b/talks/bluehats-2019/outline
@@ -0,0 +1,62 @@
+-*- mode: org -*-
+
+This talk was in French with a slot of 5-7 minutes, questions included.  It was
+taken in a full day satellite to Paris Open Source Summit.  The initiative was
+lead by Bastien Guerry from https://www.etalab.gouv.fr/.  More information of
+the programme 
[[https://forum.etalab.gouv.fr/t/journee-bluehats-lors-du-paris-open-source-summit-le-11-decembre-2019/4614][here]].
+
+The slot was very short and the audience very heterogeneous; especially about
+the day-to-day concerns.  As an engineer working in an institute doing research
+in biology, I have tried to explain what is the Reproducible Science challenge
+in the modern age of data.
+
+In short, today a scientific result is an experiment producing data *and* a
+numerical processing.  From what I am seeing, the experimental part is more or
+less well described, or let say that people in labs are aware of its importance
+because they have already several decades (even more) of collective learning.
+
+However, not enough people take care about the numerical processing.  Mainly, 
in
+my opinion, because we are living a scientific paradigm shift.  From what I am
+seeing, more 

01/02: talks: Fix broken links between files.

[Ludovic Court�]

civodul pushed a commit to branch master
in repository maintenance.

commit 550aec16e4825b8e806c4a121f905766e5c0f2d4
Author: zimoun 
AuthorDate: Fri Dec 20 19:56:22 2019 +0100

talks: Fix broken links between files.

* .gitignore: Remove /talks/inria-bordeaux-2016/images/hwloc-graph.pdf
 /talks/fosdem-2018/hpc/images/hwloc-runtime-deps.pdf.
* talks/inria-bordeaux-2016/images: Add hwloc-graph.pdf.
* talks/bosc-2017/images: Remove unnecessary link.
* talks/bosc-2017/images: Fix frozen-pizza.jpg.
* talks/bosc-2017/images: Fix docker-image-layers-cropped.png.
* talks/fosdem2018/hpc/images: Add hwloc-runtime-deps.pdf.
* talks/aramis-2019/images: Remove unnecessary link.
* talks/fosdem-2019/minimalist/images: Fix Guix-horizontal-print.pdf.

Signed-off-by: Ludovic Courtès 
---
 .gitignore  |   2 --
 talks/aramis-2019/images/universal_install_script*  |   1 -
 talks/bosc-2017/images/docker-image-layers-cropped.png  |   2 +-
 talks/bosc-2017/images/frozen-pizza.jpg |   2 +-
 talks/bosc-2017/images/universal_install_script.png |   1 -
 talks/fosdem-2018/hpc/images/hwloc-runtime-deps.pdf | Bin 0 -> 25877 bytes
 .../minimalist/images/Guix-horizontal-print.pdf |   2 +-
 talks/inria-bordeaux-2016/images/hwloc-graph.pdf| Bin 0 -> 34007 bytes
 8 files changed, 3 insertions(+), 7 deletions(-)

diff --git a/.gitignore b/.gitignore
index 45ec0bd..07b7f65 100644
--- a/.gitignore
+++ b/.gitignore
@@ -85,7 +85,6 @@
 /talks/cufp-2016/talk.snm
 /talks/cufp-2016/talk.toc
 /talks/cufp-2016/talk.vrb
-/talks/inria-bordeaux-2016/images/hwloc-graph.pdf
 /talks/inria-bordeaux-2016/talk.aux
 /talks/inria-bordeaux-2016/talk.log
 /talks/inria-bordeaux-2016/talk.nav
@@ -135,7 +134,6 @@
 /talks/gpce-2017/talk.snm
 /talks/gpce-2017/talk.toc
 /talks/gpce-2017/talk.vrb
-/talks/fosdem-2018/hpc/images/hwloc-runtime-deps.pdf
 /talks/fosdem-2018/hpc/talk.aux
 /talks/fosdem-2018/hpc/talk.log
 /talks/fosdem-2018/hpc/talk.nav
diff --git a/talks/aramis-2019/images/universal_install_script* 
b/talks/aramis-2019/images/universal_install_script*
deleted file mode 12
index 6f7454f..000
--- a/talks/aramis-2019/images/universal_install_script*
+++ /dev/null
@@ -1 +0,0 @@
-../../jcad-2018/images/universal_install_script*
\ No newline at end of file
diff --git a/talks/bosc-2017/images/docker-image-layers-cropped.png 
b/talks/bosc-2017/images/docker-image-layers-cropped.png
index 829451a..69bb4b1 12
--- a/talks/bosc-2017/images/docker-image-layers-cropped.png
+++ b/talks/bosc-2017/images/docker-image-layers-cropped.png
@@ -1 +1 @@
-../../../fosdem-2016/distributions/images/docker-image-layers-cropped.png
\ No newline at end of file
+../../fosdem-2016/distributions/images/docker-image-layers-cropped.png
\ No newline at end of file
diff --git a/talks/bosc-2017/images/frozen-pizza.jpg 
b/talks/bosc-2017/images/frozen-pizza.jpg
index 20306e2..cf77790 12
--- a/talks/bosc-2017/images/frozen-pizza.jpg
+++ b/talks/bosc-2017/images/frozen-pizza.jpg
@@ -1 +1 @@
-../../../fosdem-2016/distributions/images/frozen-pizza.jpg
\ No newline at end of file
+../../fosdem-2016/distributions/images/frozen-pizza.jpg
\ No newline at end of file
diff --git a/talks/bosc-2017/images/universal_install_script.png 
b/talks/bosc-2017/images/universal_install_script.png
deleted file mode 12
index e21c111..000
--- a/talks/bosc-2017/images/universal_install_script.png
+++ /dev/null
@@ -1 +0,0 @@
-../../../inria-bordeaux-2016/images/universal_install_script.png
\ No newline at end of file
diff --git a/talks/fosdem-2018/hpc/images/hwloc-runtime-deps.pdf 
b/talks/fosdem-2018/hpc/images/hwloc-runtime-deps.pdf
new file mode 100644
index 000..5a71886
Binary files /dev/null and 
b/talks/fosdem-2018/hpc/images/hwloc-runtime-deps.pdf differ
diff --git a/talks/fosdem-2019/minimalist/images/Guix-horizontal-print.pdf 
b/talks/fosdem-2019/minimalist/images/Guix-horizontal-print.pdf
index 5c30073..0eabc66 12
--- a/talks/fosdem-2019/minimalist/images/Guix-horizontal-print.pdf
+++ b/talks/fosdem-2019/minimalist/images/Guix-horizontal-print.pdf
@@ -1 +1 @@
-/home/ludo/src/guix-maintenance/talks/bosc-2017/images/Guix-horizontal-print.pdf
\ No newline at end of file
+../../../bosc-2017/images/Guix-horizontal-print.pdf
\ No newline at end of file
diff --git a/talks/inria-bordeaux-2016/images/hwloc-graph.pdf 
b/talks/inria-bordeaux-2016/images/hwloc-graph.pdf
new file mode 100644
index 000..e882c34
Binary files /dev/null and b/talks/inria-bordeaux-2016/images/hwloc-graph.pdf 
differ

branch master updated (1fffba6 -> 40b1cee)

[guix-commits]

nckx pushed a change to branch master
in repository guix.

from 1fffba6  gnu: Add manuskript.
 new 03d76f8  gnu: mercurial: Raise test time-outs.
 new 40b1cee  gnu: mpop: Mark up description.

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/mail.scm| 6 +++---
 gnu/packages/version-control.scm | 4 
 2 files changed, 7 insertions(+), 3 deletions(-)

branch master updated (6894f93 -> 885e217)

[Ludovic Court�]

civodul pushed a change to branch master
in repository maintenance.

from 6894f93  talks: fosdem2020-search-discovery: Mention current work.
 new 550aec1  talks: Fix broken links between files.
 new 885e217  talks: Add BlueHats 2019 talk.

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore |  10 +-
 talks/aramis-2019/images/universal_install_script* |   1 -
 talks/bluehats-2019/images/Guix-white.pdf  |   1 +
 .../images/big-picture-3.pdf   |   0
 talks/bluehats-2019/images/diderot_u-paris.png | Bin 0 -> 2260 bytes
 talks/bluehats-2019/images/diderot_u-paris_bis.png | Bin 0 -> 2130 bytes
 talks/bluehats-2019/images/guix-refcard.pdf|   1 +
 .../images/guixhpc-logo-transparent.pdf|   1 +
 .../images/software-heritage-logo-title-white.pdf  |   1 +
 talks/bluehats-2019/outline|  62 +++
 talks/bluehats-2019/talk.20191211.pdf  | Bin 0 -> 468454 bytes
 talks/bluehats-2019/talk.tex   | 440 +
 .../images/docker-image-layers-cropped.png |   2 +-
 talks/bosc-2017/images/frozen-pizza.jpg|   2 +-
 .../bosc-2017/images/universal_install_script.png  |   1 -
 .../fosdem-2018/hpc/images/hwloc-runtime-deps.pdf  | Bin 0 -> 25877 bytes
 .../minimalist/images/Guix-horizontal-print.pdf|   2 +-
 .../images/hwloc-graph.pdf | Bin 34007 -> 34007 bytes
 18 files changed, 517 insertions(+), 7 deletions(-)
 delete mode 12 talks/aramis-2019/images/universal_install_script*
 create mode 12 talks/bluehats-2019/images/Guix-white.pdf
 copy talks/{in2p3-2019 => bluehats-2019}/images/big-picture-3.pdf (100%)
 create mode 100644 talks/bluehats-2019/images/diderot_u-paris.png
 create mode 100644 talks/bluehats-2019/images/diderot_u-paris_bis.png
 create mode 12 talks/bluehats-2019/images/guix-refcard.pdf
 create mode 12 talks/bluehats-2019/images/guixhpc-logo-transparent.pdf
 create mode 12 
talks/bluehats-2019/images/software-heritage-logo-title-white.pdf
 create mode 100644 talks/bluehats-2019/outline
 create mode 100644 talks/bluehats-2019/talk.20191211.pdf
 create mode 100644 talks/bluehats-2019/talk.tex
 delete mode 12 talks/bosc-2017/images/universal_install_script.png
 create mode 100644 talks/fosdem-2018/hpc/images/hwloc-runtime-deps.pdf
 copy talks/{aramis-2019 => inria-bordeaux-2016}/images/hwloc-graph.pdf (99%)

02/02: gnu: mpop: Mark up description.

[guix-commits]

nckx pushed a commit to branch master
in repository guix.

commit 40b1cee620a55bf1fc5d8d897ed1ec147b2535c8
Author: Tobias Geerinckx-Rice 
AuthorDate: Wed Jan 15 03:11:26 2020 +0100

gnu: mpop: Mark up description.

* gnu/packages/mail.scm (mpop)[description]: Use @acronym.
---
 gnu/packages/mail.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 2151953..c49ed76 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -2171,9 +2171,9 @@ converts them to maildir format directories.")
 fetchmail replacement.
 
 mpop supports multiple accounts, header based mail filtering, delivery
-to mbox files, maildir folders or a Mail Delivery Agent (MDA),
-TLS/SSL, several authentication methods, Internationalized Domain
-Names (IDN) and SOCKS proxies.")
+to mbox files, maildir folders or an @acronym{MDA, Mail Delivery Agent},
+TLS/SSL, several authentication methods, @acronym{IDN, Internationalized Domain
+Names} and SOCKS proxies.")
 (license gpl3+)))
 
 (define-public mhonarc

01/02: gnu: mercurial: Raise test time-outs.

[guix-commits]

nckx pushed a commit to branch master
in repository guix.

commit 03d76f8a42996cca3f0604a3ae9a8fe289a940ed
Author: Tobias Geerinckx-Rice 
AuthorDate: Wed Jan 15 23:00:11 2020 +0100

gnu: mercurial: Raise test time-outs.

Let Guix handle them.  Fixes .

* gnu/packages/version-control.scm (mercurial)[arguments]:
Raise individual test time-outs to 1 day.
---
 gnu/packages/version-control.scm | 4 
 1 file changed, 4 insertions(+)

diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 5403bcf..417bccf 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -1269,6 +1269,10 @@ control to Git repositories.")
  ;; ‘make check’ does not respect ‘-j’.
  (string-append "-j" (number->string
   (parallel-job-count)))
+ ;; The default time-outs are too low for many systems.
+ ;; Raise them generously: Guix enforces its own.
+ "--timeout" "86400"
+ "--slowtimeout" "86400"
  ;; The test suite takes a long time and produces 
little
  ;; output by default.  Prevent timeouts due to 
silence.
  "-v"))

branch master updated: gnu: Add manuskript.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

ngz pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
 new 1fffba6  gnu: Add manuskript.
1fffba6 is described below

commit 1fffba664d71f3a8669b5eefd2c4a83dca5bacce
Author: Nicolas Goaziou 
AuthorDate: Fri Jan 3 00:59:01 2020 +0100

gnu: Add manuskript.

* gnu/packages/text-editors.scm (manuskript): New variable.
---
 gnu/packages/text-editors.scm | 106 +-
 1 file changed, 105 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm
index 60eed99..863ac7e 100644
--- a/gnu/packages/text-editors.scm
+++ b/gnu/packages/text-editors.scm
@@ -8,7 +8,7 @@
 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice 
 ;;; Copyright © 2019 Efraim Flashner 
 ;;; Copyright © 2019 Andreas Enge 
-;;; Copyright © 2019 Nicolas Goaziou 
+;;; Copyright © 2019, 2020 Nicolas Goaziou 
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -33,6 +33,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system glib-or-gtk)
+  #:use-module (guix build-system python)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (gnu packages)
   #:use-module (gnu packages assembly)
@@ -45,6 +46,7 @@
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
+  #:use-module (gnu packages haskell-xyz)
   #:use-module (gnu packages libbsd)
   #:use-module (gnu packages libreoffice)
   #:use-module (gnu packages lua)
@@ -354,6 +356,108 @@ OpenBSD team.")
 environment with Markdown markup.")
 (license license:gpl3+)))   ; icons/* under CC-BY-SA3
 
+(define-public manuskript
+  (package
+(name "manuskript")
+(version "0.10.0")
+(source
+ (origin
+   (method git-fetch)
+   (uri (git-reference
+ (url "https://github.com/olivierkes/manuskript.git;)
+ (commit version)))
+   (file-name (git-file-name name version))
+   (sha256
+(base32 "0q413vym7hzjpyg3krj5y63hwpncdifjkyswqmr76zg5yqnklnh3"
+(build-system python-build-system)
+(arguments
+ `(#:tests? #f  ;no test
+   #:phases
+   (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (replace 'install
+   (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+(share (string-append out "/share/manuskript")))
+   ;; Install data.
+   (mkdir-p share)
+   (for-each
+(lambda (d)
+  (let ((destination  (string-append share "/" d)))
+(mkdir-p destination)
+(copy-recursively d destination)))
+'("bin" "i18n" "icons" "libs" "manuskript" "resources"))
+   ;; Install documentation.
+   (let ((doc (string-append out
+ "/doc/manuskript-" ,version
+ "/sample-projects")))
+ (mkdir-p doc)
+ (copy-recursively "sample-projects" doc))
+   ;; Wrap executable in "$out/share/manuskript/bin" and
+   ;; link to it from "$out/bin".
+   (let ((bin (string-append out "/bin"))
+ (executable (string-append share "/bin/manuskript")))
+ (wrap-program executable
+   (list "PYTHONPATH" 'prefix (list (getenv "PYTHONPATH"
+ (mkdir-p bin)
+ (with-directory-excursion bin
+   (symlink (string-append share "/bin/manuskript")
+"manuskript")))
+   ;; Install icons and create .desktop file.
+   (let ((apps (string-append out "/share/applications"))
+ (icons-dir (string-append out "/share/pixmaps")))
+ (install-file "icons/Manuskript/manuskript.svg" icons-dir)
+ (mkdir-p apps)
+ (with-output-to-file (string-append apps 
"/manuskript.desktop")
+   (lambda _
+ (format #t
+ "[Desktop Entry]~@
+ Name=Manuskript~@
+ MimeType=application/x-manuskript-book;~@
+ Exec=~a/bin/manuskript %f~@
+ Comment=Tool for writers~@
+ Comment[es]=Herramienta para escritores/as~@
+ Keywords=manuskript;office;write;edit;novel;text;msk~@
+ Terminal=false~@
+ Type=Application~@
+ Icon=manuskript~@
+ Categories=Office;WordProcessor;~%"
+ out

branch master updated (49181f8 -> e2e62bf)

[guix-commits]

nckx pushed a change to branch master
in repository guix.

from 49181f8  gnu: asymptote: Update to 2.62.
 new fb5ecde  gnu: mpop: Remove unnecessary libidn input.
 new 4a30c51  gnu: mpop: Update to 1.4.7.
 new e2e62bf  gnu: mercurial: Run tests verbosely and respect settings.

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/mail.scm|  7 +++---
 gnu/packages/version-control.scm | 49 
 2 files changed, 32 insertions(+), 24 deletions(-)

01/03: gnu: mpop: Remove unnecessary libidn input.

[guix-commits]

nckx pushed a commit to branch master
in repository guix.

commit fb5ecdecdf292bb6cec3d57862291f2ce5a60df5
Author: Tobias Geerinckx-Rice 
AuthorDate: Wed Jan 15 02:58:01 2020 +0100

gnu: mpop: Remove unnecessary libidn input.

gnu/packages/mail.scm (mpop)[inputs]: Remove libidn.
---
 gnu/packages/mail.scm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 7d56949..0fe6691 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -2162,8 +2162,7 @@ converts them to maildir format directories.")
 (base32 "0q4ifzvl1gcndvqqqk7n9mc599r4s2knxjc7alflwb366fql58gv"
 (build-system gnu-build-system)
 (inputs
- `(("gnutls" ,gnutls)
-   ("libidn" ,libidn)))
+ `(("gnutls" ,gnutls)))
 (native-inputs
  `(("pkg-config" ,pkg-config)))
 (home-page "https://marlam.de/mpop/;)

03/03: gnu: mercurial: Run tests verbosely and respect settings.

[guix-commits]

nckx pushed a commit to branch master
in repository guix.

commit e2e62bf55a6d327202bd05780db7569c4176b491
Author: Tobias Geerinckx-Rice 
AuthorDate: Wed Jan 15 20:58:46 2020 +0100

gnu: mercurial: Run tests verbosely and respect settings.

* gnu/packages/version-control.scm (mercurial)[arguments]:
Invoke ‘run-tests.py’ directly and verbosely.
Respect #:tests? and parallel-job-count.
---
 gnu/packages/version-control.scm | 49 
 1 file changed, 29 insertions(+), 20 deletions(-)

diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 741a98d..5403bcf 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -1244,26 +1244,35 @@ control to Git repositories.")
  `(#:phases
(modify-phases %standard-phases
  (replace 'check
-   (lambda _
- ;; The following tests are known to fail.
- (for-each (lambda (file)
- (delete-file (string-append "tests/" file)))
-   '("test-extdiff.t"
- "test-hghave.t"
- "test-hgwebdir.t"
- "test-http-branchmap.t"
- "test-logtoprocess.t"
- "test-merge-combination.t"
- "test-nointerrupt.t"
- "test-patchbomb.t"
- "test-pull-bundle.t"
- "test-push-http.t"
- "test-run-tests.t"
- "test-serve.t"
- "test-subrepo-deep-nested-change.t"
- "test-subrepo-recursion.t"
- "test-transplant.t"))
- (invoke "make" "check"))
+   (lambda* (#:key tests? #:allow-other-keys)
+ (with-directory-excursion "tests"
+   ;; The following tests are known to fail.
+   (for-each (lambda (file)
+   (delete-file file))
+ '("test-extdiff.t"
+   "test-hghave.t"
+   "test-hgwebdir.t"
+   "test-http-branchmap.t"
+   "test-logtoprocess.t"
+   "test-merge-combination.t"
+   "test-nointerrupt.t"
+   "test-patchbomb.t"
+   "test-pull-bundle.t"
+   "test-push-http.t"
+   "test-run-tests.t"
+   "test-serve.t"
+   "test-subrepo-deep-nested-change.t"
+   "test-subrepo-recursion.t"
+   "test-transplant.t"))
+   (when tests?
+ (invoke "./run-tests.py"
+ ;; ‘make check’ does not respect ‘-j’.
+ (string-append "-j" (number->string
+  (parallel-job-count)))
+ ;; The test suite takes a long time and produces 
little
+ ;; output by default.  Prevent timeouts due to 
silence.
+ "-v"))
+   #t))
 ;; The following inputs are only needed to run the tests.
 (native-inputs
  `(("python-nose" ,python-nose)

02/03: gnu: mpop: Update to 1.4.7.

[guix-commits]

nckx pushed a commit to branch master
in repository guix.

commit 4a30c51eb8922ce97dec67824f47c7ef884eec69
Author: Tobias Geerinckx-Rice 
AuthorDate: Wed Jan 15 02:45:56 2020 +0100

gnu: mpop: Update to 1.4.7.

* gnu/packages/mail.scm (mpop): Update to 1.4.7.
---
 gnu/packages/mail.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 0fe6691..2151953 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -2152,14 +2152,14 @@ converts them to maildir format directories.")
 (define-public mpop
   (package
 (name "mpop")
-(version "1.4.6")
+(version "1.4.7")
 (source
  (origin
(method url-fetch)
(uri (string-append "https://marlam.de/mpop/releases/;
"mpop-" version ".tar.xz"))
(sha256
-(base32 "0q4ifzvl1gcndvqqqk7n9mc599r4s2knxjc7alflwb366fql58gv"
+(base32 "0c6n5afn9pr4p7gxkv462lysrw52w9fhvavzm99c78dcp9dj5xnk"
 (build-system gnu-build-system)
 (inputs
  `(("gnutls" ,gnutls)))

branch master updated: talks: fosdem2020-search-discovery: Mention current work.

[Pierre Neidhardt]

This is an automated email from the git hooks/post-receive script.

ambrevar pushed a commit to branch master
in repository maintenance.

The following commit(s) were added to refs/heads/master by this push:
 new 6894f93  talks: fosdem2020-search-discovery: Mention current work.
6894f93 is described below

commit 6894f93f47e850d26d1ff215e702ac839030524c
Author: Pierre Neidhardt 
AuthorDate: Wed Jan 15 22:39:21 2020 +0100

talks: fosdem2020-search-discovery: Mention current work.

* talks/fosdem-2020/search-discovery/search-discovery.org: Add "Work" 
section.
---
 talks/fosdem-2020/search-discovery/search-discovery.org | 12 
 1 file changed, 12 insertions(+)

diff --git a/talks/fosdem-2020/search-discovery/search-discovery.org 
b/talks/fosdem-2020/search-discovery/search-discovery.org
index d40d7fc..7fdba48 100644
--- a/talks/fosdem-2020/search-discovery/search-discovery.org
+++ b/talks/fosdem-2020/search-discovery/search-discovery.org
@@ -155,3 +155,15 @@ We don't want to include tags in a permanent databases:
 - Too subjective.
 - Evolves over time depending on the latest trends.
 #+end_notes
+
+* Current work
+
+For Guix:
+
+- File index
+- GUI
+- Smarter search
+- User services
+- Community contribution integration
+
+# TODO: Mention NLNet?

branch master updated: talks: fosdem2020-search-discovery: Add draft.

[Pierre Neidhardt]

This is an automated email from the git hooks/post-receive script.

ambrevar pushed a commit to branch master
in repository maintenance.

The following commit(s) were added to refs/heads/master by this push:
 new 15cbddd  talks: fosdem2020-search-discovery: Add draft.
15cbddd is described below

commit 15cbddd52023752b0bdde63d9ffc58b6a2503c1e
Author: Pierre Neidhardt 
AuthorDate: Wed Jan 15 22:00:26 2020 +0100

talks: fosdem2020-search-discovery: Add draft.

* talks/fosdem-2020/search-discovery/search-discovery.org: New file.
---
 .../images/Guix_logo_noname.svg.png| Bin 0 -> 62720 bytes
 .../search-discovery/search-discovery.org  | 157 +
 2 files changed, 157 insertions(+)

diff --git a/talks/fosdem-2020/search-discovery/images/Guix_logo_noname.svg.png 
b/talks/fosdem-2020/search-discovery/images/Guix_logo_noname.svg.png
new file mode 100644
index 000..817364f
Binary files /dev/null and 
b/talks/fosdem-2020/search-discovery/images/Guix_logo_noname.svg.png differ
diff --git a/talks/fosdem-2020/search-discovery/search-discovery.org 
b/talks/fosdem-2020/search-discovery/search-discovery.org
new file mode 100644
index 000..d40d7fc
--- /dev/null
+++ b/talks/fosdem-2020/search-discovery/search-discovery.org
@@ -0,0 +1,157 @@
+#+AUTHOR: Pierre Neidhardt
+#+EMAIL: m...@ambrevar.xyz
+#+TITLE: Search & discover packages and services with GNU Guix
+
+#+OPTIONS: reveal_single_file:t
+
+#+OPTIONS: toc:nil
+
+#+REVEAL_ROOT: http://cdn.jsdelivr.net/reveal.js/3.0.0/
+# #+REVEAL_TRANS: page
+#+REVEAL_PLUGINS: (highlight)
+#+REVEAL_THEME: night
+
+#+REVEAL_MAX_SCALE: 0.6
+
+#+REVEAL_TITLE_SLIDE_BACKGROUND: ./images/Guix_logo_noname.svg.png
+#+REVEAL_TITLE_SLIDE_BACKGROUND_SIZE: 550px
+
+#+TODO: Talk about guile.
+
+* How do we search?
+
+# https://www.ted.com/talks/tim_berners_lee_the_next_web/transcript
+
+# TODO: Fill in the quote on linking web data.
+"..."
+-- Tim Berners Lee
+"The Next Web" (2009)
+
+#+begin_notes
+How do we find the program that we are looking for?
+Let me rephrase: How do we find the program that does the job for us?
+
+What do we expect from computers?
+We don't expect to program them: we expect to run a program and get the job 
done.
+
+User experience question: when first confronted with a computer, how do we know
+which program to run? => Tribal knowledge (e.g. VLC is famous because it's 
famous).
+
+Speak for Guix-specific improvements, but also more general research.
+#+end_notes
+
+* Dotfiles, or "Yet another home-made service"
+
+#+TODO: Take data from GitHub, gitlab "dotfiles" repositories
+??? "dotfiles" repositories across GitHub, GitLab...
+
+Average of ??? lines.
+
+#+begin_notes
+Show of hands: who has spent too much time on their dotfiles?
+
+What is a dotfile really?  It's just another home-made service.
+
+Just like a program, it gets the job done.  And when start thinking this way, 
we
+start realizing that it's only a blurred line between services and packages.
+#+end_notes
+
+* First-class services
+
+Or "The end of dotfiles!"
+
+#+begin_notes
+My claim: we can put an end to dotfiles!
+
+Rephrase: An end to "egoistic un-reusable dotfiles".
+
+Everyone can start upstreaming their dotfiles configurations and share them.
+
+Dream: Just need to declare which program and services you want to use and your
+are done.  This could tailor to your most specific needs.
+
+Service example: daily backup of my data with rsync+ssh/vpn.
+#+end_notes
+
+* Example
+
+# TODO: Finish service example
+#+begin_src scheme
+  (backup-service-type
+   (backup-configuration
+(host "123.123.123.123")
+(port "")
+(method rsync+vpn)
+(folders
+ '(("/path/folder1" "/target/destination1")
+   ("/path/folder1" "/target/destination2")
+#+end_src
+
+# TODO: More examples?
+
+* A flood of packages and services
+
+Nix has some 40,000+ packages.
+
+Guix is getting there: 12,000 as of FOSDEM 2020.
+
+#+begin_notes
+Services don't have well known names.
+
+How do we find our way around this mess?
+
+More general problem: search programs / services is hard.
+#+end_notes
+
+* GNU Guix and GNU Shepherd
+
+- Can be installed everywhere.
+- Shepherd services drag Guix dependent packages automatically.
+
+* Problem 1: File search
+
+SQLite databases from substitute servers.
+
+* Problem 2: Package parameters
+
+# TODO: Really talk about this?
+"Gentoo USE flags"
+
+Example: FFmpeg compiled with AAC encoding
+
+* Problem 3: User interface
+
+- Command line of course...
+- ...But also GUI!
+
+# TODO: Videos?  Demo with Helm?
+
+#+begin_notes
+Live, fuzzy search that "does what you mean."
+Understands if you are looking for a service, file, application.
+#+end_notes
+
+* The Art of Searching
+
+- À-la "web search-engine".
+- Databases: Wikidata
+- Smart search engines: Xapian?
+
+#+begin_notes
+Wikidata is a good way to factor the work between distributions.
+#+end_notes
+
+* Community contributions
+
+# Mention Alternative To?

branch master updated: gnu: asymptote: Update to 2.62.

[guix-commits]

This is an automated email from the git hooks/post-receive script.

ngz pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
 new 49181f8  gnu: asymptote: Update to 2.62.
49181f8 is described below

commit 49181f84af46fa5ca6146bdf61aab5fabf652641
Author: Nicolas Goaziou 
AuthorDate: Wed Jan 15 22:10:31 2020 +0100

gnu: asymptote: Update to 2.62.

* gnu/packages/plotutils.scm (asymptote): Update to 2.62.
---
 gnu/packages/plotutils.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/plotutils.scm b/gnu/packages/plotutils.scm
index df9821b..8a3afc9 100644
--- a/gnu/packages/plotutils.scm
+++ b/gnu/packages/plotutils.scm
@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès 

 ;;; Copyright © 2015 Eric Bavier 
-;;; Copyright © 2016, 2017, 2019 Nicolas Goaziou 
+;;; Copyright © 2016, 2017, 2019, 2020 Nicolas Goaziou 
 ;;; Copyright © 2018 Tobias Geerinckx-Rice 
 ;;;
 ;;; This file is part of GNU Guix.
@@ -180,14 +180,14 @@ colors, styles, options and details.")
 (define-public asymptote
   (package
 (name "asymptote")
-(version "2.61")
+(version "2.62")
 (source (origin
   (method url-fetch)
   (uri (string-append "mirror://sourceforge/asymptote/"
   version "/asymptote-" version ".src.tgz"))
   (sha256
(base32
-"0gcd75yixn67lpiky70yhaa0ylr8g1cn65bpr9zx78h2vrpsmk7k"
+"0510vnlpfyrvshsxr5lh3klwyhmn2cf4ba1ja476mbv5dcqqbc30"
 (build-system gnu-build-system)
 ;; Note: The 'asy' binary retains a reference to docdir for use with its
 ;; "help" command in interactive mode, so adding a "doc" output is not

01/13: gnu: popt: Add a source file name.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 981bd6e69cc7d58889b8b14d582b5519be7f7246
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:07:37 2020 +0100

gnu: popt: Add a source file name.

* gnu/packages/popt.scm (popt)[source](file-name): New field.
---
 gnu/packages/popt.scm | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/gnu/packages/popt.scm b/gnu/packages/popt.scm
index 857455d..2e77368 100644
--- a/gnu/packages/popt.scm
+++ b/gnu/packages/popt.scm
@@ -68,6 +68,8 @@ line syntax.")
 ;; so fallback to Debians copy.
 (string-append 
"https://deb.debian.org/debian/pool/main;
"/p/popt/popt_" version 
".orig.tar.gz")))
+ ;; Ensure the file name stays the same.
+ (file-name (string-append "popt-" version ".tar.gz"))
  (sha256
   (base32
"1j2c61nn2n351nhj4d25mnf3vpiddcykq005w2h6kw79dwlysa77"

05/13: gnu: python-zipp: Update to 1.0.0.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 6b3cef844c5b7c5628fba57e6aed42c56d06cbca
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:10:26 2020 +0100

gnu: python-zipp: Update to 1.0.0.

* gnu/packages/python-compression.scm (python-zipp): Update to 1.0.0.
[propagated-inputs]: Remove PYTHON-RST.LINKER.  Add PYTHON-MORE-ITERTOOLS.
Move PYTHON-CONTEXTLIB2 and PYTHON-PATHLIB2 ...
[native-inputs]: ... here.  Remove PYTHON-SPHINX.
---
 gnu/packages/python-compression.scm | 11 +--
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/python-compression.scm 
b/gnu/packages/python-compression.scm
index 0f2bc78..6015b5a 100644
--- a/gnu/packages/python-compression.scm
+++ b/gnu/packages/python-compression.scm
@@ -211,22 +211,21 @@ install: libbitshuffle.so
 (define-public python-zipp
   (package
 (name "python-zipp")
-(version "0.5.1")
+(version "1.0.0")
 (source
  (origin
(method url-fetch)
(uri (pypi-uri "zipp" version))
(sha256
 (base32
- "1hsv4zwy1pwnbrr63wjjkpwrmnk36ngbkkqw01bj5hcwh1z3m56a"
+ "0v3qayhqv7vyzydpydwcp51bqciw8p2ajddw68x5k8zppc0vx3yk"
 (build-system python-build-system)
 (propagated-inputs
+ `(("python-more-itertools" ,python-more-itertools)))
+(native-inputs
  `(("python-contextlib2" ,python-contextlib2)
("python-pathlib2" ,python-pathlib2)
-   ("python-rst.linker" ,python-rst.linker)))
-(native-inputs
- `(("python-setuptools-scm" ,python-setuptools-scm)
-   ("python-sphinx" ,python-sphinx)
+   ("python-setuptools-scm" ,python-setuptools-scm)
("python-unittest2" ,python-unittest2)))
 (home-page "https://github.com/jaraco/zipp;)
 (synopsis

11/13: gnu: python-elementpath: Update to 1.3.3.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit b2205ae4f691c42573af19721fd1bd54f186fb58
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:18:35 2020 +0100

gnu: python-elementpath: Update to 1.3.3.

* gnu/packages/xml.scm (python-elementpath): Update to 1.3.3.
---
 gnu/packages/xml.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index 83a2f1b..7259efb 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -2054,14 +2054,14 @@ modular implementation of XML-RPC for C and C++.")
 (define-public python-elementpath
   (package
 (name "python-elementpath")
-(version "1.2.0")
+(version "1.3.3")
 (source
  (origin
(method url-fetch)
(uri (pypi-uri "elementpath" version))
(sha256
 (base32
- "1syn2z543brab23dskh3fjd9pqvz6npqbcicrs2d88dbg26xl08p"
+ "1rb8892zli74wk1c4hyg77ja9wglq9hplgxwak1rmj3s9p6xnf0p"
 (build-system python-build-system)
 (home-page
  "https://github.com/sissaschool/elementpath;)

13/13: gnu: Add python-xmlschema.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit c950a2a51d1ad22cad4158ca13b88bf886df00d2
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:20:25 2020 +0100

gnu: Add python-xmlschema.

* gnu/packages/xml.scm (python-xmlschema): New public variable.
---
 gnu/packages/xml.scm | 40 +++-
 1 file changed, 39 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index 73ee26e..9984e92 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -13,7 +13,7 @@
 ;;; Copyright © 2016 Jan Nieuwenhuizen 
 ;;; Copyright © 2016, 2017 ng0 
 ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice 

-;;; Copyright © 2016, 2017, 2018, 2019 Marius Bakke 
+;;; Copyright © 2016, 2017, 2018, 2019, 2020 Marius Bakke 
 ;;; Copyright © 2017 Adriano Peluso 
 ;;; Copyright © 2017 Gregor Giesen 
 ;;; Copyright © 2017 Alex Vong 
@@ -2105,6 +2105,44 @@ libxml2 and libxslt.")
 (define-public python2-lxml
   (package-with-python2 python-lxml))
 
+(define-public python-xmlschema
+  (package
+(name "python-xmlschema")
+(version "1.0.18")
+(source (origin
+  (method url-fetch)
+  (uri (pypi-uri "xmlschema" version))
+  (sha256
+   (base32
+"1inwqwr7d3qah9xf9rfzkpva433jpr4n7n43zybf2gdpz4q1g0ry"
+(build-system python-build-system)
+(arguments
+ '(#:phases
+   (modify-phases %standard-phases
+ (replace 'check
+   (lambda* (#:key (tests? #t) #:allow-other-keys)
+ (if tests?
+ (begin
+   (setenv "PYTHONPATH"
+   (string-append "./build/lib:"
+  (getenv "PYTHONPATH")))
+   (invoke "python" "xmlschema/tests/test_all.py"))
+ (format #t "test suite not run~%"))
+ #t)
+(native-inputs
+ `(("python-lxml" ,python-lxml)))   ;for tests
+(propagated-inputs
+ `(("python-elementpath" ,python-elementpath)))
+(home-page "https://github.com/sissaschool/xmlschema;)
+(synopsis "XML Schema validator and data conversion library")
+(description
+ "The @code{xmlschema} library is an implementation of
+@url{https://www.w3.org/2001/XMLSchema, XML Schema} for Python.  It has
+full support for the XSD 1.0 and 1.1 standards, an XPath-based API for
+finding schema's elements and attributes; and can encode and decode
+XML data to JSON and other formats.")
+(license license:expat)))
+
 (define-public python-xmltodict
   (package
 (name "python-xmltodict")

06/13: gnu: python-wheel: Update to 0.33.6.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 8f137daf8af37a8f91f74370948fac3f01728a80
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:11:05 2020 +0100

gnu: python-wheel: Update to 0.33.6.

* gnu/packages/python-xyz.scm (python-wheel): Update to 0.33.6.
[arguments]: Explicitly disable tests (they never ran before).
[native-inputs, properties]: Remove.
(python2-wheel): Use PACKAGE-WITH-PYTHON2.
---
 gnu/packages/python-xyz.scm | 21 +
 1 file changed, 9 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6cf1fdf..9ad4609 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1908,18 +1908,20 @@ with sensible defaults out of the box.")
 (define-public python-wheel
   (package
 (name "python-wheel")
-(version "0.32.3")
+(version "0.33.6")
 (source
   (origin
 (method url-fetch)
 (uri (pypi-uri "wheel" version))
 (sha256
  (base32
-  "1dhxl1bf18bx9szmqcnxbg6204hp3im8089q3hkwh5jfa6zh75q2"
+  "0ii6f34rvpjg3nmw4bc2h7fhdsy38y1h93hghncfs5akfrldmj8h"
 (build-system python-build-system)
-(native-inputs
- `(("python-jsonschema" ,python-jsonschema)
-   ("python-pytest-cov" ,python-pytest-cov)))
+(arguments
+ ;; FIXME: The test suite runs "python setup.py bdist_wheel", which in turn
+ ;; fails to find the newly-built bdist_wheel library, even though it is
+ ;; available on PYTHONPATH.  What search path is consulted by setup.py?
+ '(#:tests? #f))
 (home-page "https://bitbucket.org/pypa/wheel/;)
 (synopsis "Format for built Python packages")
 (description
@@ -1930,15 +1932,10 @@ packages will be properly installed with only the 
@code{Unpack} step and the
 unpacked archive preserves enough information to @code{Spread} (copy data and
 scripts to their final locations) at any later time.  Wheel files can be
 installed with a newer @code{pip} or with wheel's own command line utility.")
-(license license:expat)
-(properties `((python2-variant . ,(delay python2-wheel))
+(license license:expat)))
 
 (define-public python2-wheel
-  (let ((wheel (package-with-python2
-(strip-python2-variant python-wheel
-(package (inherit wheel)
-  (native-inputs `(("python2-functools32" ,python2-functools32)
-,@(package-native-inputs wheel))
+  (package-with-python2 python-wheel))
 
 (define-public python-vcversioner
   (package

03/13: gnu: python-pytest-checkdocs: Add missing input.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 59fa08d6f8c295b4ad58b24996fbee21d24dc4ca
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:09:41 2020 +0100

gnu: python-pytest-checkdocs: Add missing input.

* gnu/packages/python-check.scm 
(python-pytest-checkdocs)[propagated-inputs]:
Add PYTHON-DOCUTILS.
---
 gnu/packages/python-check.scm | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index caa3987..a4d065d 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -120,7 +120,8 @@ interactions, which will update them to correspond to the 
new API.")
 (base32 "0j6j1gvj6x451y3qsx4xbaq9p1w9gg3mwk7n0w80cy8vdyjkngb0"
 (build-system python-build-system)
 (propagated-inputs
- `(("python-importlib-metadata" ,python-importlib-metadata)
+ `(("python-docutils" ,python-docutils)
+   ("python-importlib-metadata" ,python-importlib-metadata)
("python-more-itertools" ,python-more-itertools)))
 (native-inputs
  `(("python-setuptools-scm" ,python-setuptools-scm)))

10/13: gnu: python-elementpath: Move to (gnu packages xml).

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 8fda8b7d6addf5e354e58e449c1a4a8894cb658b
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:18:05 2020 +0100

gnu: python-elementpath: Move to (gnu packages xml).

* gnu/packages/python-xyz.scm (python-elementpath): Move from here ...
* gnu/packages/xml.scm (python-elementpath): ... to here.
---
 gnu/packages/python-xyz.scm | 25 -
 gnu/packages/xml.scm| 26 ++
 2 files changed, 26 insertions(+), 25 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6d8e9ca..1f8b936 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -16621,31 +16621,6 @@ for manual interpretation.")
 (description "Library for simple routing on OSM data")
 (license license:gpl3+)))
 
-(define-public python-elementpath
-  (package
-(name "python-elementpath")
-(version "1.2.0")
-(source
- (origin
-   (method url-fetch)
-   (uri (pypi-uri "elementpath" version))
-   (sha256
-(base32
- "1syn2z543brab23dskh3fjd9pqvz6npqbcicrs2d88dbg26xl08p"
-(build-system python-build-system)
-(home-page
- "https://github.com/sissaschool/elementpath;)
-(synopsis
- "XPath 1.0/2.0 parsers and selectors for ElementTree and lxml")
-(description
- "The proposal of this package is to provide XPath 1.0 and 2.0 selectors
-for Python's ElementTree XML data structures, both for the standard
-ElementTree library and for the @uref{http://lxml.de, lxml.etree} library.
-
-For lxml.etree this package can be useful for providing XPath 2.0 selectors,
-because lxml.etree already has it's own implementation of XPath 1.0.")
-(license license:expat)))
-
 (define-public python-bibtexparser
   (package
 (name "python-bibtexparser")
diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index 5b9082c..83a2f1b 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -21,6 +21,7 @@
 ;;; Copyright © 2017 Stefan Reichör 
 ;;; Copyright © 2018 Pierre Neidhardt 
 ;;; Copyright © 2018 Jack Hill 
+;;; Copyright © 2019 Giacomo Leidi 
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2050,6 +2051,31 @@ server using HTTP, and gets back the response as XML.  
This library provides a
 modular implementation of XML-RPC for C and C++.")
 (license (list license:psfl license:expat
 
+(define-public python-elementpath
+  (package
+(name "python-elementpath")
+(version "1.2.0")
+(source
+ (origin
+   (method url-fetch)
+   (uri (pypi-uri "elementpath" version))
+   (sha256
+(base32
+ "1syn2z543brab23dskh3fjd9pqvz6npqbcicrs2d88dbg26xl08p"
+(build-system python-build-system)
+(home-page
+ "https://github.com/sissaschool/elementpath;)
+(synopsis
+ "XPath 1.0/2.0 parsers and selectors for ElementTree and lxml")
+(description
+ "The proposal of this package is to provide XPath 1.0 and 2.0 selectors
+for Python's ElementTree XML data structures, both for the standard
+ElementTree library and for the @uref{http://lxml.de, lxml.etree} library.
+
+For lxml.etree this package can be useful for providing XPath 2.0 selectors,
+because lxml.etree already has it's own implementation of XPath 1.0.")
+(license license:expat)))
+
 (define-public python-xmltodict
   (package
 (name "python-xmltodict")

02/13: gnu: python-sortedcontainers: Update to 2.1.0.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit b244f166b9c74a87875671187c8c33ca2e083e53
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:08:46 2020 +0100

gnu: python-sortedcontainers: Update to 2.1.0.

* gnu/packages/python-xyz.scm (python-sortedcontainers): Update to 2.1.0.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3825e30..a81137f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -15771,14 +15771,14 @@ that is accessible to other projects developed in 
Cython.")
 (define-public python-sortedcontainers
   (package
 (name "python-sortedcontainers")
-(version "2.0.4")
+(version "2.1.0")
 (source
  (origin
(method url-fetch)
(uri (pypi-uri "sortedcontainers" version))
(sha256
 (base32
- "10hrk2k0hbf9x78vd3f0lj277m1yzfhzzxr0hja718liwb398wk0"
+ "0fm0w5id2yhqld95hg2m636vjgkz377rvgdfqaxc25vbylr9lklp"
 (build-system python-build-system)
 (native-inputs
  `(("python-tox" ,python-tox)))

04/13: gnu: python-importlib-metadata: Update to 1.4.0.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 4dc04d11c8541ab4390236429ad989f46691aa53
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:10:06 2020 +0100

gnu: python-importlib-metadata: Update to 1.4.0.

* gnu/packages/python-xyz.scm (python-importlib-metadata): Update to 1.4.0.
[propagated-inputs]: Remove PYTHON-CONFIGPARSER, PYTHON-CONTEXTLIB2,
PYTHON-DOCUTILS, PYTHON-PATHLIB2, and PYTHON-RST.LINKER.
[native-inputs]: Remove PYTHON-SPHINX.  Add PYTHON-PACKAGING.
---
 gnu/packages/python-xyz.scm | 13 -
 1 file changed, 4 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a81137f..6cf1fdf 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4964,24 +4964,19 @@ older Python versions.")
 (define-public python-importlib-metadata
   (package
 (name "python-importlib-metadata")
-(version "0.23")
+(version "1.4.0")
 (source
  (origin
(method url-fetch)
(uri (pypi-uri "importlib_metadata" version))
(sha256
-(base32 "09mdqdfv5rdrwz80jh9m379gxmvk2vhjfz0fg53hid00icvxf65a"
+(base32 "1n76444v7zn910xrhh8954jdn4byxbn9f1jck6b85a716mbh2z7i"
 (build-system python-build-system)
 (propagated-inputs
- `(("python-configparser" ,python-configparser)
-   ("python-contextlib2" ,python-contextlib2)
-   ("python-docutils" ,python-docutils)
-   ("python-pathlib2" ,python-pathlib2)
-   ("python-rst.linker" ,python-rst.linker)
-   ("python-zipp" ,python-zipp)))
+ `(("python-zipp" ,python-zipp)))
 (native-inputs
  `(("python-setuptools-scm" ,python-setuptools-scm)
-   ("python-sphinx" ,python-sphinx)))
+   ("python-packaging" ,python-packaging)))
 (home-page "https://importlib-metadata.readthedocs.io/;)
 (synopsis "Read metadata from Python packages")
 (description

12/13: gnu: python-lxml: Move to (gnu packages xml).

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 55e1475cb58c1b9535b35f8bdb157b1435c54755
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:19:26 2020 +0100

gnu: python-lxml: Move to (gnu packages xml).

* gnu/packages/python-xyz.scm (python-lxml): Move from here ...
* gnu/packages/xml.scm (python-lxml): ... to here.
* gnu/packages/django.scm, gnu/packages/drones.scm,
gnu/packages/libreoffice.scm, gnu/packages/nutrition.scm,
gnu/packages/openstack.scm, gnu/packages/pulseaudio.scm,
gnu/packages/python-science.scm, gnu/packages/tryton.scm,
gnu/packages/wireservice.scm: Adjust module imports.
---
 gnu/packages/django.scm |  3 ++-
 gnu/packages/drones.scm |  1 +
 gnu/packages/libreoffice.scm|  1 -
 gnu/packages/nutrition.scm  |  3 ++-
 gnu/packages/openstack.scm  |  1 +
 gnu/packages/pulseaudio.scm |  1 +
 gnu/packages/python-science.scm |  1 +
 gnu/packages/python-xyz.scm | 29 -
 gnu/packages/tryton.scm |  1 +
 gnu/packages/wireservice.scm|  3 ++-
 gnu/packages/xml.scm| 29 +
 11 files changed, 40 insertions(+), 33 deletions(-)

diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 7e7bc5d..f0551d8 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -36,7 +36,8 @@
   #:use-module (gnu packages python-web)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages sphinx)
-  #:use-module (gnu packages time))
+  #:use-module (gnu packages time)
+  #:use-module (gnu packages xml))
 
 (define-public python-django
   (package
diff --git a/gnu/packages/drones.scm b/gnu/packages/drones.scm
index 18b2621..1bc0962 100644
--- a/gnu/packages/drones.scm
+++ b/gnu/packages/drones.scm
@@ -23,6 +23,7 @@
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-xyz)
+  #:use-module (gnu packages xml)
   #:use-module (guix download)
   #:use-module (guix utils)
   #:use-module (guix git-download)
diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm
index 038031b..93474db 100644
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@ -75,7 +75,6 @@
   #:use-module (gnu packages perl-compression)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages rdf)
   #:use-module (gnu packages scanner)
   #:use-module (gnu packages tls)
diff --git a/gnu/packages/nutrition.scm b/gnu/packages/nutrition.scm
index 0e55334..bae166d 100644
--- a/gnu/packages/nutrition.scm
+++ b/gnu/packages/nutrition.scm
@@ -29,7 +29,8 @@
   #:use-module (gnu packages glib)
   #:use-module (gnu packages image)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-xyz))
+  #:use-module (gnu packages python-xyz)
+  #:use-module (gnu packages xml))
 
 (define-public gourmet
   (package
diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm
index c976d8a..0d87691 100644
--- a/gnu/packages/openstack.scm
+++ b/gnu/packages/openstack.scm
@@ -33,6 +33,7 @@
   #:use-module (gnu packages time)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages version-control)
+  #:use-module (gnu packages xml)
   #:use-module (guix build-system python)
   #:use-module (guix download)
   #:use-module ((guix licenses)
diff --git a/gnu/packages/pulseaudio.scm b/gnu/packages/pulseaudio.scm
index 671dcd1..8e67779 100644
--- a/gnu/packages/pulseaudio.scm
+++ b/gnu/packages/pulseaudio.scm
@@ -51,6 +51,7 @@
   #:use-module (gnu packages python-web)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages xiph)
+  #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg))
 
 (define-public libsndfile
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 4a262ec..b424136 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -37,6 +37,7 @@
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages sphinx)
   #:use-module (gnu packages time)
+  #:use-module (gnu packages xml)
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix utils)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1f8b936..479466c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5784,35 +5784,6 @@ the GObject Introspection bindings to libnotify for 
non-GTK applications.")
 (define-public python2-notify2
   (package-with-python2 python-notify2))
 
-(define-public python-lxml
-  (package
-(name "python-lxml")
-(version "4.4.2")
-(source
-  (origin
-(method url-fetch)
-(uri (pypi-uri "lxml" version))
-(sha256
- (base32 "01nvb5j8vs9nk4z5s3250b1m22b4d08kffa36if3g1mdygdrvxpg"
-(build-system python-build-system)
-(arguments
- 

09/13: gnu: Add python2-importlib-metadata.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit 5efa04dd935ecf6f7803501b1b8952810f4330ad
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:14:02 2020 +0100

gnu: Add python2-importlib-metadata.

* gnu/packages/python-xyz.scm (python2-importlib-metadata): New public 
variable.
---
 gnu/packages/python-xyz.scm | 13 +
 1 file changed, 13 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 430ed4a..6d8e9ca 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5010,6 +5010,19 @@ its top-level name.  This functionality intends to 
replace most uses of
 need to use the older and less efficient @code{pkg_resources} package.")
 (license license:asl2.0)))
 
+(define-public python2-importlib-metadata
+  (let ((base (package-with-python2 (strip-python2-variant
+ python-importlib-metadata
+(package/inherit
+ base
+ (name "python2-importlib-metadata")
+ (propagated-inputs
+  `(("python-configparser" ,python2-configparser)
+("python-contextlib2" ,python2-contextlib2)
+("python-importlib-resources" ,python2-importlib-resources)
+("python-pathlib2" ,python2-pathlib2)
+,@(package-propagated-inputs base))
+
 (define-public python-jaraco-packaging
   (package
 (name "python-jaraco-packaging")

07/13: gnu: Add python2-importlib-resources.

[guix-commits]

mbakke pushed a commit to branch master
in repository guix.

commit fd5c264ad8c97ce5e44fdcabd25132d019eee953
Author: Marius Bakke 
AuthorDate: Wed Jan 15 20:11:49 2020 +0100

gnu: Add python2-importlib-resources.

* gnu/packages/python-xyz.scm (python2-importlib-resources): New public 
variable.
---
 gnu/packages/python-xyz.scm | 27 ++-
 1 file changed, 26 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9ad4609..430ed4a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -26,7 +26,7 @@
 ;;; Copyright © 2016, 2017 ng0 
 ;;; Copyright © 2016 Dylan Jeffers 
 ;;; Copyright © 2016 David Craven 
-;;; Copyright © 2016, 2017, 2018, 2019 Marius Bakke 
+;;; Copyright © 2016, 2017, 2018, 2019, 2020 Marius Bakke 
 ;;; Copyright © 2016, 2017 Stefan Reichör 
 ;;; Copyright © 2016 Dylan Jeffers 
 ;;; Copyright © 2016, 2017, 2019 Alex Vong 
@@ -4958,6 +4958,31 @@ all the newest features of the standard @code{pathlib} 
can be used also on
 older Python versions.")
 (license license:expat)))
 
+(define-public python2-importlib-resources
+  (package
+(name "python2-importlib-resources")
+(version "1.0.2")
+(source (origin
+  (method url-fetch)
+  (uri (pypi-uri "importlib_resources" version))
+  (sha256
+   (base32
+"0y3hg12iby1qyaspnbisz4s4vxax7syikk3skznwqizqyv89y9yk"
+(build-system python-build-system)
+(arguments
+ `(#:python ,python-2))
+(native-inputs
+ `(("python-wheel" ,python2-wheel)))
+(propagated-inputs
+ `(("python-pathlib2" ,python2-pathlib2)
+   ("python-typing" ,python2-typing)))
+(home-page "https://gitlab.com/python-devs/importlib_resources;)
+(synopsis "Backport of @code{importlib.resources} from Python 3.7")
+(description
+ "This package provides an implementation of @code{importlib.resources}
+for older versions of Python.")
+(license license:asl2.0)))
+
 (define-public python-importlib-metadata
   (package
 (name "python-importlib-metadata")

branch master updated (a650ee0 -> c950a2a)

[guix-commits]

mbakke pushed a change to branch master
in repository guix.

from a650ee0  gnu: guix: Update to 4aea90b.
 new 981bd6e  gnu: popt: Add a source file name.
 new b244f16  gnu: python-sortedcontainers: Update to 2.1.0.
 new 59fa08d  gnu: python-pytest-checkdocs: Add missing input.
 new 4dc04d1  gnu: python-importlib-metadata: Update to 1.4.0.
 new 6b3cef8  gnu: python-zipp: Update to 1.0.0.
 new 8f137da  gnu: python-wheel: Update to 0.33.6.
 new fd5c264  gnu: Add python2-importlib-resources.
 new f15bdfe  gnu: Add python2-zipp.
 new 5efa04d  gnu: Add python2-importlib-metadata.
 new 8fda8b7  gnu: python-elementpath: Move to (gnu packages xml).
 new b2205ae  gnu: python-elementpath: Update to 1.3.3.
 new 55e1475  gnu: python-lxml: Move to (gnu packages xml).
 new c950a2a  gnu: Add python-xmlschema.

The 13 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/django.scm |   3 +-
 gnu/packages/drones.scm |   1 +
 gnu/packages/libreoffice.scm|   1 -
 gnu/packages/nutrition.scm  |   3 +-
 gnu/packages/openstack.scm  |   1 +
 gnu/packages/popt.scm   |   2 +
 gnu/packages/pulseaudio.scm |   1 +
 gnu/packages/python-check.scm   |   3 +-
 gnu/packages/python-compression.scm |  14 ++--
 gnu/packages/python-science.scm |   1 +
 gnu/packages/python-xyz.scm | 132 +++-
 gnu/packages/tryton.scm |   1 +
 gnu/packages/wireservice.scm|   3 +-
 gnu/packages/xml.scm|  95 +-
 14 files changed, 171 insertions(+), 90 deletions(-)