[HCP-Users] Diffusion Preprocessing
Hello, I am working on running the diffusion preprocessing pipeline using the script from https://github.com/Washington-University/Pipelines/blob/master/Examples/Scripts/DiffusionPreprocessingBatch.sh as a reference. When it is supposed to copy the positive raw data to the working directory I keep getting an ERROR: could not open file (for the imcp command). The files themselves are not corrupted, and imcp works, and I checked that my StudyFolder path and EnvScript are correct. I am new to preprocessing HCP data so its very possible that I'm missing something basic. Does anyone know how to fix this kind of issue? I would be happy to provide my script for reference. Thank you so much! Levi Solomyak ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] Myelin mapping with FLAIR
You can take a look at the UK Biobank project FLAIR protocol first and start your site-specific piloting from there. http://users.fmrib.ox.ac.uk/~steve/BiobankPiloting/ On Jun 18, 2015, at 10:56 AM, Michael Dwyer mgdw...@bnac.netmailto:mgdw...@bnac.net wrote: Dear HCP experts, First, I would like to thank you all for a great and informative course last week. I really enjoyed the interleaved lectures and practicals, and everything was extremely well organized I think Matt had mentioned during the course that the T1/T2 myelin mapping could also work with FLAIR. We are acquiring a hi-res 3D-FLAIR clinically on a GE scanner, and I was hoping you could give some pointers on the best way to acquire it. I assume we should avoid pre-scan re-calibration, but is there anything else special we should do? Thanks in advance. Best, Mike -- Michael G. Dwyer, Ph.D. Assistant Professor of Neurology and Biomedical Informatics Director of Technical Imaging Development Buffalo Neuroimaging Analysis Center University at Buffalo 100 High St. Buffalo NY 14203 mgdw...@bnac.netmailto:mgdw...@bnac.net (716) 859-7065 ___ HCP-Users mailing list HCP-Users@humanconnectome.orgmailto:HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
[HCP-Users] Myelin mapping with FLAIR
Dear HCP experts, First, I would like to thank you all for a great and informative course last week. I really enjoyed the interleaved lectures and practicals, and everything was extremely well organized I think Matt had mentioned during the course that the T1/T2 myelin mapping could also work with FLAIR. We are acquiring a hi-res 3D-FLAIR clinically on a GE scanner, and I was hoping you could give some pointers on the best way to acquire it. I assume we should avoid pre-scan re-calibration, but is there anything else special we should do? Thanks in advance. Best, Mike -- Michael G. Dwyer, Ph.D. Assistant Professor of Neurology and Biomedical Informatics Director of Technical Imaging Development Buffalo Neuroimaging Analysis Center University at Buffalo 100 High St. Buffalo NY 14203 mgdw...@bnac.net (716) 859-7065 ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
