subject:"\[HCP\-Users\] FIX error in fix_3

Re: [HCP-Users] FIX error in fix_3_clean.m

2017-09-12 Thread Glasser, Matthew

Thanks for letting us know that it worked.

Peace,

Matt.

From: Sang-Young Kim mailto:sykim...@gmail.com>>
Date: Tuesday, September 12, 2017 at 10:00 AM
To: Keith Jamison mailto:kjami...@umn.edu>>
Cc: Matt Glasser mailto:glass...@wustl.edu>>, 
"HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>" 
mailto:HCP-Users@humanconnectome.org>>
Subject: Re: [HCP-Users] FIX error in fix_3_clean.m

Hello, Keith:

After making change in the script of call_matlab.sh in FIX installation folder, 
the FIX is working without the error.
I hope someone who have the same issue with me see this post.

I really appreciate your help.

Best,

Sang-Young

On Sep 11, 2017, at 6:51 PM, Keith Jamison 
mailto:kjami...@umn.edu>> wrote:

In your FSL FIX installation, you can try making the same change in line #307 
of call_matlab.sh

-Keith

On Mon, Sep 11, 2017 at 6:34 PM, Sang-Young Kim 
mailto:sykim...@gmail.com>> wrote:
I am running the script ${HOME}/projects/Pipelines/ICAFIX/hcp_fix.

Is there a point to modify the script in order for working FIX?

Thanks.

Sang-Young

On Sep 11, 2017, at 6:28 PM, Keith Jamison 
mailto:kjami...@umn.edu>> wrote:

Try changing line #381 in ReApplyFix/ReApplyFixPipeline.sh from:

ML_PATHS="addpath('${FSL_MATLAB_PATH}'); addpath('${FSL_FIX_CIFTIRW}');"

to

ML_PATHS="restoredefaultpath; addpath('${FSL_MATLAB_PATH}'); 
addpath('${FSL_FIX_CIFTIRW}');"

-Keith

On Mon, Sep 11, 2017 at 5:54 PM, Sang-Young Kim 
mailto:sykim...@gmail.com>> wrote:
Yes, I’m using CIFTI data. This is the interpreted version.

Sang-Young

On Sep 11, 2017, at 5:59 PM, Glasser, Matthew 
mailto:glass...@wustl.edu>> wrote:

Are you using CIFTI data?  Is this the compiled version of matlab or the
interpreted version?

Peace,

Matt.

On 9/11/17, 4:19 PM, 
"hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>
 on behalf of
Sang-Young Kim" 
mailto:hcp-users-boun...@humanconnectome.org>
 on behalf of
sykim...@gmail.com<mailto:sykim...@gmail.com>> wrote:

Dear HCP experts:

I¹m struggling with FIX for many days. The problem is that FIX does not
generate cleaned data.
So I found error message in .fix.log file as shown below.

TR =

  1

Elapsed time is 2.053048 seconds.
{?Error using file_array/permute (line 10)
file_array objects can not be permuted.

Error in read_gifti_file>gifti_Data (line 191)
 d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);

Error in read_gifti_file>gifti_DataArray (line 122)
 s(1).data = gifti_Data(t,c(i),s(1).attributes);

Error in read_gifti_file (line 45)
 this.data{end+1} = gifti_DataArray(t,uid(i),filename);

Error in gifti (line 74)
 this = read_gifti_file(varargin{1},giftistruct);

Error in ciftiopen (line 16)
cifti = gifti([tmpname '.gii']);

Error in fix_3_clean (line 48)
BO=ciftiopen('Atlas.dtseries.nii',WBC);
}?
**

Actually I saw many posts with the same error. But no clear solution is
provided. I believe I set the path correctly and use last version of
GIFTI toolbox. And I have tested "ciftiopen" function directly on the
matlab. It worked in matlab.
But I have no idea why above error came up while running FIX.

Any insights would be greatly appreciated.

Thanks.

Sang-Young Kim, Ph.D.

Postdoctoral Fellow
Department of Radiology, University of Pittsburgh
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Re: [HCP-Users] FIX error in fix_3_clean.m

2017-09-12 Thread Sang-Young Kim

Hello, Keith:

After making change in the script of call_matlab.sh in FIX installation folder, 
the FIX is working without the error. 
I hope someone who have the same issue with me see this post. 

I really appreciate your help. 

Best, 

Sang-Young


> On Sep 11, 2017, at 6:51 PM, Keith Jamison  wrote:
> 
> In your FSL FIX installation, you can try making the same change in line #307 
> of call_matlab.sh
> 
> -Keith
> 
> On Mon, Sep 11, 2017 at 6:34 PM, Sang-Young Kim  > wrote:
> I am running the script ${HOME}/projects/Pipelines/ICAFIX/hcp_fix. 
> 
> Is there a point to modify the script in order for working FIX?
> 
> Thanks. 
> 
> Sang-Young
> 
> 
>> On Sep 11, 2017, at 6:28 PM, Keith Jamison > > wrote:
>> 
>> Try changing line #381 in ReApplyFix/ReApplyFixPipeline.sh from:
>> 
>> ML_PATHS="addpath('${FSL_MATLAB_PATH}'); addpath('${FSL_FIX_CIFTIRW}');"
>> 
>> to 
>> 
>> ML_PATHS="restoredefaultpath; addpath('${FSL_MATLAB_PATH}'); 
>> addpath('${FSL_FIX_CIFTIRW}');"
>> 
>> -Keith
>> 
>> On Mon, Sep 11, 2017 at 5:54 PM, Sang-Young Kim > > wrote:
>> Yes, I’m using CIFTI data. This is the interpreted version. 
>> 
>> Sang-Young
>> 
>> 
>>> On Sep 11, 2017, at 5:59 PM, Glasser, Matthew >> > wrote:
>>> 
>>> Are you using CIFTI data?  Is this the compiled version of matlab or the
>>> interpreted version?
>>> 
>>> Peace,
>>> 
>>> Matt.
>>> 
>>> On 9/11/17, 4:19 PM, "hcp-users-boun...@humanconnectome.org 
>>>  on behalf of
>>> Sang-Young Kim" >>  on behalf of
>>> sykim...@gmail.com > wrote:
>>> 
 Dear HCP experts:
 
 I¹m struggling with FIX for many days. The problem is that FIX does not
 generate cleaned data.
 So I found error message in .fix.log file as shown below.
 
 TR =
 
   1
 
 Elapsed time is 2.053048 seconds.
 {?Error using file_array/permute (line 10)
 file_array objects can not be permuted.
 
 Error in read_gifti_file>gifti_Data (line 191)
  d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);
 
 Error in read_gifti_file>gifti_DataArray (line 122)
  s(1).data = gifti_Data(t,c(i),s(1).attributes);
 
 Error in read_gifti_file (line 45)
  this.data{end+1} = gifti_DataArray(t,uid(i),filename);
 
 Error in gifti (line 74)
  this = read_gifti_file(varargin{1},giftistruct);
 
 Error in ciftiopen (line 16)
 cifti = gifti([tmpname '.gii']);
 
 Error in fix_3_clean (line 48)
 BO=ciftiopen('Atlas.dtseries.nii',WBC);
 }? 
 **
 
 Actually I saw many posts with the same error. But no clear solution is
 provided. I believe I set the path correctly and use last version of
 GIFTI toolbox. And I have tested "ciftiopen" function directly on the
 matlab. It worked in matlab.
 But I have no idea why above error came up while running FIX.
 
 Any insights would be greatly appreciated.
 
 Thanks. 
 
 Sang-Young Kim, Ph.D.
 
 Postdoctoral Fellow
 Department of Radiology, University of Pittsburgh
 ___
 HCP-Users mailing list
 HCP-Users@humanconnectome.org 
 http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
 
>> ___
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org 
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
>> 
> 
> 


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Re: [HCP-Users] FIX error in fix_3_clean.m

2017-09-11 Thread Keith Jamison

In your FSL FIX installation, you can try making the same change in line
#307 of call_matlab.sh

-Keith

On Mon, Sep 11, 2017 at 6:34 PM, Sang-Young Kim  wrote:

> I am running the script ${HOME}/projects/Pipelines/ICAFIX/hcp_fix.
>
> Is there a point to modify the script in order for working FIX?
>
> Thanks.
>
> Sang-Young
>
>
> On Sep 11, 2017, at 6:28 PM, Keith Jamison  wrote:
>
> Try changing line #381 in ReApplyFix/ReApplyFixPipeline.sh from:
>
> ML_PATHS="addpath('${FSL_MATLAB_PATH}'); addpath('${FSL_FIX_CIFTIRW}');"
>
> to
>
> ML_PATHS="restoredefaultpath; addpath('${FSL_MATLAB_PATH}'); addpath('
> ${FSL_FIX_CIFTIRW}');"
>
> -Keith
>
> On Mon, Sep 11, 2017 at 5:54 PM, Sang-Young Kim 
> wrote:
>
>> Yes, I’m using CIFTI data. This is the interpreted version.
>>
>> Sang-Young
>>
>>
>> On Sep 11, 2017, at 5:59 PM, Glasser, Matthew  wrote:
>>
>> Are you using CIFTI data?  Is this the compiled version of matlab or the
>> interpreted version?
>>
>> Peace,
>>
>> Matt.
>>
>> On 9/11/17, 4:19 PM, "hcp-users-boun...@humanconnectome.org on behalf of
>> Sang-Young Kim" > sykim...@gmail.com> wrote:
>>
>> Dear HCP experts:
>>
>> I¹m struggling with FIX for many days. The problem is that FIX does not
>> generate cleaned data.
>> So I found error message in .fix.log file as shown below.
>> 
>> TR =
>>
>>   1
>>
>> Elapsed time is 2.053048 seconds.
>> {?Error using file_array/permute (line 10)
>> file_array objects can not be permuted.
>>
>> Error in read_gifti_file>gifti_Data (line 191)
>>  d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);
>>
>> Error in read_gifti_file>gifti_DataArray (line 122)
>>  s(1).data = gifti_Data(t,c(i),s(1).attributes);
>>
>> Error in read_gifti_file (line 45)
>>  this.data{end+1} = gifti_DataArray(t,uid(i),filename);
>>
>> Error in gifti (line 74)
>>  this = read_gifti_file(varargin{1},giftistruct);
>>
>> Error in ciftiopen (line 16)
>> cifti = gifti([tmpname '.gii']);
>>
>> Error in fix_3_clean (line 48)
>> BO=ciftiopen('Atlas.dtseries.nii',WBC);
>> }?
>> **
>>
>> Actually I saw many posts with the same error. But no clear solution is
>> provided. I believe I set the path correctly and use last version of
>> GIFTI toolbox. And I have tested "ciftiopen" function directly on the
>> matlab. It worked in matlab.
>> But I have no idea why above error came up while running FIX.
>>
>> Any insights would be greatly appreciated.
>>
>> Thanks.
>>
>> Sang-Young Kim, Ph.D.
>>
>> Postdoctoral Fellow
>> Department of Radiology, University of Pittsburgh
>> ___
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>
>>
>> ___
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>
>
>
>

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Re: [HCP-Users] FIX error in fix_3_clean.m

2017-09-11 Thread Sang-Young Kim

I am running the script ${HOME}/projects/Pipelines/ICAFIX/hcp_fix. 

Is there a point to modify the script in order for working FIX?

Thanks. 

Sang-Young


> On Sep 11, 2017, at 6:28 PM, Keith Jamison  wrote:
> 
> Try changing line #381 in ReApplyFix/ReApplyFixPipeline.sh from:
> 
> ML_PATHS="addpath('${FSL_MATLAB_PATH}'); addpath('${FSL_FIX_CIFTIRW}');"
> 
> to 
> 
> ML_PATHS="restoredefaultpath; addpath('${FSL_MATLAB_PATH}'); 
> addpath('${FSL_FIX_CIFTIRW}');"
> 
> -Keith
> 
> On Mon, Sep 11, 2017 at 5:54 PM, Sang-Young Kim  > wrote:
> Yes, I’m using CIFTI data. This is the interpreted version. 
> 
> Sang-Young
> 
> 
>> On Sep 11, 2017, at 5:59 PM, Glasser, Matthew > > wrote:
>> 
>> Are you using CIFTI data?  Is this the compiled version of matlab or the
>> interpreted version?
>> 
>> Peace,
>> 
>> Matt.
>> 
>> On 9/11/17, 4:19 PM, "hcp-users-boun...@humanconnectome.org 
>>  on behalf of
>> Sang-Young Kim" >  on behalf of
>> sykim...@gmail.com > wrote:
>> 
>>> Dear HCP experts:
>>> 
>>> I¹m struggling with FIX for many days. The problem is that FIX does not
>>> generate cleaned data.
>>> So I found error message in .fix.log file as shown below.
>>> 
>>> TR =
>>> 
>>>   1
>>> 
>>> Elapsed time is 2.053048 seconds.
>>> {?Error using file_array/permute (line 10)
>>> file_array objects can not be permuted.
>>> 
>>> Error in read_gifti_file>gifti_Data (line 191)
>>>  d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);
>>> 
>>> Error in read_gifti_file>gifti_DataArray (line 122)
>>>  s(1).data = gifti_Data(t,c(i),s(1).attributes);
>>> 
>>> Error in read_gifti_file (line 45)
>>>  this.data{end+1} = gifti_DataArray(t,uid(i),filename);
>>> 
>>> Error in gifti (line 74)
>>>  this = read_gifti_file(varargin{1},giftistruct);
>>> 
>>> Error in ciftiopen (line 16)
>>> cifti = gifti([tmpname '.gii']);
>>> 
>>> Error in fix_3_clean (line 48)
>>> BO=ciftiopen('Atlas.dtseries.nii',WBC);
>>> }? 
>>> **
>>> 
>>> Actually I saw many posts with the same error. But no clear solution is
>>> provided. I believe I set the path correctly and use last version of
>>> GIFTI toolbox. And I have tested "ciftiopen" function directly on the
>>> matlab. It worked in matlab.
>>> But I have no idea why above error came up while running FIX.
>>> 
>>> Any insights would be greatly appreciated.
>>> 
>>> Thanks. 
>>> 
>>> Sang-Young Kim, Ph.D.
>>> 
>>> Postdoctoral Fellow
>>> Department of Radiology, University of Pittsburgh
>>> ___
>>> HCP-Users mailing list
>>> HCP-Users@humanconnectome.org 
>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
>>> 
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org 
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
> 


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Re: [HCP-Users] FIX error in fix_3_clean.m

2017-09-11 Thread Keith Jamison

Try changing line #381 in ReApplyFix/ReApplyFixPipeline.sh from:

ML_PATHS="addpath('${FSL_MATLAB_PATH}'); addpath('${FSL_FIX_CIFTIRW}');"

to

ML_PATHS="restoredefaultpath; addpath('${FSL_MATLAB_PATH}'); addpath('
${FSL_FIX_CIFTIRW}');"

-Keith

On Mon, Sep 11, 2017 at 5:54 PM, Sang-Young Kim  wrote:

> Yes, I’m using CIFTI data. This is the interpreted version.
>
> Sang-Young
>
>
> On Sep 11, 2017, at 5:59 PM, Glasser, Matthew  wrote:
>
> Are you using CIFTI data?  Is this the compiled version of matlab or the
> interpreted version?
>
> Peace,
>
> Matt.
>
> On 9/11/17, 4:19 PM, "hcp-users-boun...@humanconnectome.org on behalf of
> Sang-Young Kim"  sykim...@gmail.com> wrote:
>
> Dear HCP experts:
>
> I¹m struggling with FIX for many days. The problem is that FIX does not
> generate cleaned data.
> So I found error message in .fix.log file as shown below.
> 
> TR =
>
>   1
>
> Elapsed time is 2.053048 seconds.
> {?Error using file_array/permute (line 10)
> file_array objects can not be permuted.
>
> Error in read_gifti_file>gifti_Data (line 191)
>  d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);
>
> Error in read_gifti_file>gifti_DataArray (line 122)
>  s(1).data = gifti_Data(t,c(i),s(1).attributes);
>
> Error in read_gifti_file (line 45)
>  this.data{end+1} = gifti_DataArray(t,uid(i),filename);
>
> Error in gifti (line 74)
>  this = read_gifti_file(varargin{1},giftistruct);
>
> Error in ciftiopen (line 16)
> cifti = gifti([tmpname '.gii']);
>
> Error in fix_3_clean (line 48)
> BO=ciftiopen('Atlas.dtseries.nii',WBC);
> }?
> **
>
> Actually I saw many posts with the same error. But no clear solution is
> provided. I believe I set the path correctly and use last version of
> GIFTI toolbox. And I have tested "ciftiopen" function directly on the
> matlab. It worked in matlab.
> But I have no idea why above error came up while running FIX.
>
> Any insights would be greatly appreciated.
>
> Thanks.
>
> Sang-Young Kim, Ph.D.
>
> Postdoctoral Fellow
> Department of Radiology, University of Pittsburgh
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>

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Re: [HCP-Users] FIX error in fix_3_clean.m

2017-09-11 Thread Sang-Young Kim

Yes, I’m using CIFTI data. This is the interpreted version. 

Sang-Young


> On Sep 11, 2017, at 5:59 PM, Glasser, Matthew  wrote:
> 
> Are you using CIFTI data?  Is this the compiled version of matlab or the
> interpreted version?
> 
> Peace,
> 
> Matt.
> 
> On 9/11/17, 4:19 PM, "hcp-users-boun...@humanconnectome.org 
>  on behalf of
> Sang-Young Kim"   on behalf of
> sykim...@gmail.com > wrote:
> 
>> Dear HCP experts:
>> 
>> I¹m struggling with FIX for many days. The problem is that FIX does not
>> generate cleaned data.
>> So I found error message in .fix.log file as shown below.
>> 
>> TR =
>> 
>>   1
>> 
>> Elapsed time is 2.053048 seconds.
>> {?Error using file_array/permute (line 10)
>> file_array objects can not be permuted.
>> 
>> Error in read_gifti_file>gifti_Data (line 191)
>>  d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);
>> 
>> Error in read_gifti_file>gifti_DataArray (line 122)
>>  s(1).data = gifti_Data(t,c(i),s(1).attributes);
>> 
>> Error in read_gifti_file (line 45)
>>  this.data{end+1} = gifti_DataArray(t,uid(i),filename);
>> 
>> Error in gifti (line 74)
>>  this = read_gifti_file(varargin{1},giftistruct);
>> 
>> Error in ciftiopen (line 16)
>> cifti = gifti([tmpname '.gii']);
>> 
>> Error in fix_3_clean (line 48)
>> BO=ciftiopen('Atlas.dtseries.nii',WBC);
>> }? 
>> **
>> 
>> Actually I saw many posts with the same error. But no clear solution is
>> provided. I believe I set the path correctly and use last version of
>> GIFTI toolbox. And I have tested "ciftiopen" function directly on the
>> matlab. It worked in matlab.
>> But I have no idea why above error came up while running FIX.
>> 
>> Any insights would be greatly appreciated.
>> 
>> Thanks. 
>> 
>> Sang-Young Kim, Ph.D.
>> 
>> Postdoctoral Fellow
>> Department of Radiology, University of Pittsburgh
>> ___
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org 
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
>> 

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Re: [HCP-Users] FIX error in fix_3_clean.m

2017-09-11 Thread Glasser, Matthew

Are you using CIFTI data?  Is this the compiled version of matlab or the
interpreted version?

Peace,

Matt.

On 9/11/17, 4:19 PM, "hcp-users-boun...@humanconnectome.org on behalf of
Sang-Young Kim"  wrote:

>Dear HCP experts:
>
>I¹m struggling with FIX for many days. The problem is that FIX does not
>generate cleaned data.
>So I found error message in .fix.log file as shown below.
>
>TR =
>
>1
>
>Elapsed time is 2.053048 seconds.
>{?Error using file_array/permute (line 10)
>file_array objects can not be permuted.
>
>Error in read_gifti_file>gifti_Data (line 191)
>   d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);
>
>Error in read_gifti_file>gifti_DataArray (line 122)
>   s(1).data = gifti_Data(t,c(i),s(1).attributes);
>
>Error in read_gifti_file (line 45)
>   this.data{end+1} = gifti_DataArray(t,uid(i),filename);
>
>Error in gifti (line 74)
>   this = read_gifti_file(varargin{1},giftistruct);
>
>Error in ciftiopen (line 16)
>cifti = gifti([tmpname '.gii']);
>
>Error in fix_3_clean (line 48)
> BO=ciftiopen('Atlas.dtseries.nii',WBC);
>}? 
>**
>
>Actually I saw many posts with the same error. But no clear solution is
>provided. I believe I set the path correctly and use last version of
>GIFTI toolbox. And I have tested "ciftiopen" function directly on the
>matlab. It worked in matlab.
>But I have no idea why above error came up while running FIX.
>
>Any insights would be greatly appreciated.
>
>Thanks. 
>
>Sang-Young Kim, Ph.D.
>
>Postdoctoral Fellow
>Department of Radiology, University of Pittsburgh
>___
>HCP-Users mailing list
>HCP-Users@humanconnectome.org
>http://lists.humanconnectome.org/mailman/listinfo/hcp-users


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[HCP-Users] FIX error in fix_3_clean.m

2017-09-11 Thread Sang-Young Kim

Dear HCP experts:

I’m struggling with FIX for many days. The problem is that FIX does not 
generate cleaned data. 
So I found error message in .fix.log file as shown below. 

TR =

1

Elapsed time is 2.053048 seconds.
{Error using file_array/permute (line 10)
file_array objects can not be permuted.

Error in read_gifti_file>gifti_Data (line 191)
   d = permute(reshape(d,fliplr(s.Dim)),length(s.Dim):-1:1);

Error in read_gifti_file>gifti_DataArray (line 122)
   s(1).data = gifti_Data(t,c(i),s(1).attributes);

Error in read_gifti_file (line 45)
   this.data{end+1} = gifti_DataArray(t,uid(i),filename);

Error in gifti (line 74)
   this = read_gifti_file(varargin{1},giftistruct);

Error in ciftiopen (line 16)
cifti = gifti([tmpname '.gii']);

Error in fix_3_clean (line 48)
 BO=ciftiopen('Atlas.dtseries.nii',WBC);
} 
**

Actually I saw many posts with the same error. But no clear solution is 
provided. I believe I set the path correctly and use last version of GIFTI 
toolbox. And I have tested "ciftiopen" function directly on the matlab. It 
worked in matlab. 
But I have no idea why above error came up while running FIX. 

Any insights would be greatly appreciated. 

Thanks. 

Sang-Young Kim, Ph.D.

Postdoctoral Fellow
Department of Radiology, University of Pittsburgh
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Re: [HCP-Users] FIX error in fix_3_clean.m

Re: [HCP-Users] FIX error in fix_3_clean.m

Re: [HCP-Users] FIX error in fix_3_clean.m

Re: [HCP-Users] FIX error in fix_3_clean.m

Re: [HCP-Users] FIX error in fix_3_clean.m

Re: [HCP-Users] FIX error in fix_3_clean.m

Re: [HCP-Users] FIX error in fix_3_clean.m

[HCP-Users] FIX error in fix_3_clean.m

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