Hello HCP team, I apologize for re-posting. I forgot to attach the image before.
Looking at results of applying HCP pipeline on my data it looks like to me that there is something wrong with intermediate images, specifically, I saw that the Sagittal plane of T1.mgz is rotated. It is noteworthy that the FreeSurferPipeline failed I believe in last recon-all step. I am attaching the screen shot of the T1.mgz here. Please let me know what you think: Thank you for your time and efforts! Mahmoud _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
