Re: [HCP-Users] dlabel file with FSL HistThal Atlas
There are two steps you need to do, and you can do them in either order: put the label names into the data file in the way workbench expects, and go from volume to cifti format. I would probably do it as making a workbench-style label volume file first: 1) wb_command -volume-label-import 2) wb_command -cifti-create-dense-from-template use the Pipelines/global/templates/91282_Greyordinates/91282_Greyordinates.dscalar.nii file from the HCP pipelines as the template If you want to combine it with a particular set of cortical labels, and you care what the key values will be after merging, you will need to make sure the key values of the volume file don't collide with those in the surface file, so you must modify one or the other first. The -create-dense-from-template command will resolve conflicts such that labels keep their names and colors, but some keys will change - I believe it happens to give the subcortical key values priority. Tim On Tue, Oct 23, 2018 at 5:43 PM, Timothy Hendrickson wrote: > Hello, > > I am attempting to use the HistThal Atlas: https://github.com/ > CobraLab/atlases/tree/master/colin27-subcortical as the subcortical > portion of a cifti file with the intention of creating a way to incorporate > it into a dlabel file. > Is there some sort of how-to that you can point me to as to how I would do > this? > > Thanks! > > -Tim > > ___ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
Re: [HCP-Users] dlabel file with FSL HistThal Atlas
It would need to be via wb_command -cifti-label-import and following the instructions in the usage there. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Timothy Hendrickson mailto:hendr...@umn.edu>> Date: Tuesday, October 23, 2018 at 5:43 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:HCP-Users@humanconnectome.org>> Subject: [HCP-Users] dlabel file with FSL HistThal Atlas Hello, I am attempting to use the HistThal Atlas: https://github.com/CobraLab/atlases/tree/master/colin27-subcortical as the subcortical portion of a cifti file with the intention of creating a way to incorporate it into a dlabel file. Is there some sort of how-to that you can point me to as to how I would do this? Thanks! -Tim ___ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
[HCP-Users] dlabel file with FSL HistThal Atlas
Hello, I am attempting to use the HistThal Atlas: https://github.com/CobraLab/atlases/tree/master/colin27-subcortical as the subcortical portion of a cifti file with the intention of creating a way to incorporate it into a dlabel file. Is there some sort of how-to that you can point me to as to how I would do this? Thanks! -Tim ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
