Re: [HCP-Users] Detailed manual rating score of structural images

2019-01-22 Thread Harms, Michael 

Hi,
Just a small addendum: There were a small number of HCP-YA subjects for which 
we used T1 or T2 scans that we had rated “fair” to allow for subject inclusion 
into the study.  The number of such subjects was very small however.

Cheers,
-MH

--
Michael Harms, Ph.D.
---
Associate Professor of Psychiatry
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel: 314-747-6173
St. Louis, MO  63110  Email: mha...@wustl.edu

From: "Elam, Jennifer" 
Date: Tuesday, January 22, 2019 at 9:48 AM
To: Xuhong Liao , hcp-users 
, "Harms, Michael" 
Subject: Re: [HCP-Users] Detailed manual rating score of structural images


Hi Xuhong,

All of the structural data released by HCP is of good or excellent quality 
(scores of 3-4 on our QC scale). We have not publicly released the exact 
ratings for released subjects. The file you are referring to is on our 
non-public wiki and is referred to as an example in the SOP for other groups 
who are setting up neuroimaging projects to understand how we did things for 
HCP.



Best,

Jenn


Jennifer Elam, Ph.D.
Scientific Outreach, Human Connectome Project
Washington University School of Medicine
Department of Neuroscience, Box 8108
660 South Euclid Avenue
St. Louis, MO 63110
314-362-9387
e...@wustl.edu<mailto:e...@wustl.edu>
www.humanconnectome.org<http://www.humanconnectome.org/>


From: hcp-users-boun...@humanconnectome.org 
 on behalf of Xuhong Liao 

Sent: Tuesday, January 22, 2019 3:57:09 AM
To: hcp-users; Harms, Michael
Subject: Re: [HCP-Users] Detailed manual rating score of structural images

Many thanks,

I noticed that the standard QC rating (1 = Poor, to 4 = Excellent) of each 
T1/T2 weighted image was added in the 'Phasell_T1W/T2w_QC.xls' located on the 
HCP wiki (https://wiki.humanconnectome.org/dashboard.action). But this link is 
fail to open. How can I obtain these rating scores?

Regards,
Xuhong Liao

Xuhong Liao, Ph. D, Associate Professor
School of Systems Science,
Beijing Normal University
No.19 Xinjiekouwai Street,
Beijing, 100875, China
liaoxuh...@gmail.com
<mailto:liaoxuh...@gmail.com>


mailto:hcp-users-requ...@humanconnectome.org>>
 于2019年1月21日周一 上午2:00写道：
Send HCP-Users mailing list submissions to
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When replying, please edit your Subject line so it is more specific
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Today's Topics:

   1. Detailed manual rating score of structural images (Xuhong Liao)
   2. Re: Detailed manual rating score of structural images
  (Harms, Michael)



-- Forwarded message --
From: Xuhong Liao mailto:liaoxuh...@gmail.com>>
To: hcp-users 
mailto:hcp-users@humanconnectome.org>>
Cc:
Bcc:
Date: Sun, 20 Jan 2019 17:29:05 +0800
Subject: [HCP-Users] Detailed manual rating score of structural images
I have got the S-1200 dataset in which the subjects with QC issues are marked 
with codes from "A" to "E".

Could anyone tell me how to obtain the detailed manual rating scores of each 
subject described in the quality control SOP?

Regards,
Xuhong Liao, PhD
--
Xuhong Liao, Associate Professor
School of Systems Science,
Beijing Normal University
No.19 Xinjiekouwai Street,
Beijing, 100875, China
liaoxuh...@gmail.com
<mailto:liaoxuh...@gmail.com>



-- Forwarded message --
From: "Harms, Michael" mailto:mha...@wustl.edu>>
To: Xuhong Liao mailto:liaoxuh...@gmail.com>>, hcp-users 
mailto:hcp-users@humanconnectome.org>>
Cc:
Bcc:
Date: Sun, 20 Jan 2019 14:19:53 +
Subject: Re: [HCP-Users] Detailed manual rating score of structural images



Hi,



https://wiki.humanconnectome.org/pages/viewpage.action?pageId=88901591





--

Michael Harms, Ph.D.

---

Associate Professor of Psychiatry

Washington University School of Medicine

Department of Psychiatry, Box 8134

660 South Euclid Ave.Tel: 314-747-6173

St. Louis, MO  63110  Email: 
mha...@wustl.edu<mailto:mha...@wustl.edu>



From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of Xuhong Liao mailto:liaoxuh...@gmail.com>>
Date: Sunday, January 20, 2019 at 3:29 AM
To: hcp-users 
mailto:hcp-users@humanconnectome.org>>
Subjec

Re: [HCP-Users] Detailed manual rating score of structural images

2019-01-22 Thread Elam, Jennifer 
Hi Xuhong,

All of the structural data released by HCP is of good or excellent quality 
(scores of 3-4 on our QC scale). We have not publicly released the exact 
ratings for released subjects. The file you are referring to is on our 
non-public wiki and is referred to as an example in the SOP for other groups 
who are setting up neuroimaging projects to understand how we did things for 
HCP.


Best,

Jenn

Jennifer Elam, Ph.D.
Scientific Outreach, Human Connectome Project
Washington University School of Medicine
Department of Neuroscience, Box 8108
660 South Euclid Avenue
St. Louis, MO 63110
314-362-9387
e...@wustl.edu<mailto:e...@wustl.edu>
www.humanconnectome.org<http://www.humanconnectome.org/>



From: hcp-users-boun...@humanconnectome.org 
 on behalf of Xuhong Liao 

Sent: Tuesday, January 22, 2019 3:57:09 AM
To: hcp-users; Harms, Michael
Subject: Re: [HCP-Users] Detailed manual rating score of structural images

Many thanks,

I noticed that the standard QC rating (1 = Poor, to 4 = Excellent) of each 
T1/T2 weighted image was added in the 'Phasell_T1W/T2w_QC.xls' located on the 
HCP wiki (https://wiki.humanconnectome.org/dashboard.action). But this link is 
fail to open. How can I obtain these rating scores?

Regards,
Xuhong Liao

Xuhong Liao, Ph. D, Associate Professor
School of Systems Science,
Beijing Normal University
No.19 Xinjiekouwai Street,
Beijing, 100875, China
liaoxuh...@gmail.com
<mailto:liaoxuh...@gmail.com>


mailto:hcp-users-requ...@humanconnectome.org>>
 于2019年1月21日周一 上午2:00写道：
Send HCP-Users mailing list submissions to
hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>

To subscribe or unsubscribe via the World Wide Web, visit
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
or, via email, send a message with subject or body 'help' to

hcp-users-requ...@humanconnectome.org<mailto:hcp-users-requ...@humanconnectome.org>

You can reach the person managing the list at

hcp-users-ow...@humanconnectome.org<mailto:hcp-users-ow...@humanconnectome.org>

When replying, please edit your Subject line so it is more specific
than "Re: Contents of HCP-Users digest..."
Today's Topics:

   1. Detailed manual rating score of structural images (Xuhong Liao)
   2. Re: Detailed manual rating score of structural images
  (Harms, Michael)



-- Forwarded message --
From: Xuhong Liao mailto:liaoxuh...@gmail.com>>
To: hcp-users 
mailto:hcp-users@humanconnectome.org>>
Cc:
Bcc:
Date: Sun, 20 Jan 2019 17:29:05 +0800
Subject: [HCP-Users] Detailed manual rating score of structural images
I have got the S-1200 dataset in which the subjects with QC issues are marked 
with codes from "A" to "E".

Could anyone tell me how to obtain the detailed manual rating scores of each 
subject described in the quality control SOP?

Regards,
Xuhong Liao, PhD
--
Xuhong Liao, Associate Professor
School of Systems Science,
Beijing Normal University
No.19 Xinjiekouwai Street,
Beijing, 100875, China
liaoxuh...@gmail.com
<mailto:liaoxuh...@gmail.com>



-- Forwarded message --
From: "Harms, Michael" mailto:mha...@wustl.edu>>
To: Xuhong Liao mailto:liaoxuh...@gmail.com>>, hcp-users 
mailto:hcp-users@humanconnectome.org>>
Cc:
Bcc:
Date: Sun, 20 Jan 2019 14:19:53 +
Subject: Re: [HCP-Users] Detailed manual rating score of structural images



Hi,



https://wiki.humanconnectome.org/pages/viewpage.action?pageId=88901591





--

Michael Harms, Ph.D.

---

Associate Professor of Psychiatry

Washington University School of Medicine

Department of Psychiatry, Box 8134

660 South Euclid Ave.Tel: 314-747-6173

St. Louis, MO  63110  Email: 
mha...@wustl.edu<mailto:mha...@wustl.edu>



From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of Xuhong Liao mailto:liaoxuh...@gmail.com>>
Date: Sunday, January 20, 2019 at 3:29 AM
To: hcp-users 
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] Detailed manual rating score of structural images



I have got the S-1200 dataset in which the subjects with QC issues are marked 
with codes from "A" to "E".



Could anyone tell me how to obtain the detailed manual rating scores of each 
subject described in the quality control SOP?



Regards,

Xuhong Liao, PhD

--

Xuhong Liao, Associate Professor

School of Systems Science,

Beijing Normal University

No.19 Xinjiekouwai Street,

Beijing, 100875, China

liaoxuh...@gmail.com
<mailto:liaoxuh...@gmail.com>

___
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http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Detailed manual rating score of structural images

2019-01-22 Thread Xuhong Liao 
Many thanks,

I noticed that the standard QC rating (1 = Poor, to 4 = Excellent) of each
T1/T2 weighted image was added in the 'Phasell_T1W/T2w_QC.xls' located on
the HCP wiki (https://wiki.humanconnectome.org/dashboard.action). But this
link is fail to open. How can I obtain these rating scores?

Regards,
Xuhong Liao

Xuhong Liao, Ph. D, Associate Professor
School of Systems Science,
Beijing Normal University
No.19 Xinjiekouwai Street,
Beijing, 100875, China
liaoxuh...@gmail.com


 于2019年1月21日周一 上午2:00写道：

> Send HCP-Users mailing list submissions to
> hcp-users@humanconnectome.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
> or, via email, send a message with subject or body 'help' to
> hcp-users-requ...@humanconnectome.org
>
> You can reach the person managing the list at
> hcp-users-ow...@humanconnectome.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of HCP-Users digest..."
> Today's Topics:
>
>1. Detailed manual rating score of structural images (Xuhong Liao)
>2. Re: Detailed manual rating score of structural images
>   (Harms, Michael)
>
>
>
> -- Forwarded message --
> From: Xuhong Liao 
> To: hcp-users 
> Cc:
> Bcc:
> Date: Sun, 20 Jan 2019 17:29:05 +0800
> Subject: [HCP-Users] Detailed manual rating score of structural images
> I have got the S-1200 dataset in which the subjects with QC issues are
> marked with codes from "A" to "E".
>
> Could anyone tell me how to obtain the detailed manual rating scores of
> each subject described in the quality control SOP?
>
> Regards,
> Xuhong Liao, PhD
> --
> Xuhong Liao, Associate Professor
> School of Systems Science,
> Beijing Normal University
> No.19 Xinjiekouwai Street,
> Beijing, 100875, China
> liaoxuh...@gmail.com
>
>
>
> -- Forwarded message ------
> From: "Harms, Michael" 
> To: Xuhong Liao , hcp-users <
> hcp-users@humanconnectome.org>
> Cc:
> Bcc:
> Date: Sun, 20 Jan 2019 14:19:53 +
> Subject: Re: [HCP-Users] Detailed manual rating score of structural images
>
>
>
> Hi,
>
>
>
> https://wiki.humanconnectome.org/pages/viewpage.action?pageId=88901591
>
>
>
>
>
> --
>
> Michael Harms, Ph.D.
>
> ---
>
> Associate Professor of Psychiatry
>
> Washington University School of Medicine
>
> Department of Psychiatry, Box 8134
>
> 660 South Euclid Ave.Tel: 314-747-6173
>
> St. Louis, MO  63110  Email: mha...@wustl.edu
>
>
>
> *From: * on behalf of Xuhong Liao <
> liaoxuh...@gmail.com>
> *Date: *Sunday, January 20, 2019 at 3:29 AM
> *To: *hcp-users 
> *Subject: *[HCP-Users] Detailed manual rating score of structural images
>
>
>
> I have got the S-1200 dataset in which the subjects with QC issues are
> marked with codes from "A" to "E".
>
>
>
> Could anyone tell me how to obtain the detailed manual rating scores of
> each subject described in the quality control SOP?
>
>
>
> Regards,
>
> Xuhong Liao, PhD
>
> --
>
> Xuhong Liao, Associate Professor
>
> School of Systems Science,
>
> Beijing Normal University
>
> No.19 Xinjiekouwai Street,
>
> Beijing, 100875, China
>
> liaoxuh...@gmail.com
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
>
> --
>
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you
> are not the intended recipient, be advised that any unauthorized use,
> disclosure, copying or the taking of any action in reliance on the contents
> of this information is strictly prohibited. If you have received this email
> in error, please immediately notify the sender via telephone or return mail.
> ___
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Re: [HCP-Users] Detailed manual rating score of structural images

2019-01-20 Thread Harms, Michael 

Hi,

https://wiki.humanconnectome.org/pages/viewpage.action?pageId=88901591


--
Michael Harms, Ph.D.
---
Associate Professor of Psychiatry
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.Tel: 314-747-6173
St. Louis, MO  63110  Email: mha...@wustl.edu

From:  on behalf of Xuhong Liao 

Date: Sunday, January 20, 2019 at 3:29 AM
To: hcp-users 
Subject: [HCP-Users] Detailed manual rating score of structural images

I have got the S-1200 dataset in which the subjects with QC issues are marked 
with codes from "A" to "E".

Could anyone tell me how to obtain the detailed manual rating scores of each 
subject described in the quality control SOP?

Regards,
Xuhong Liao, PhD
--
Xuhong Liao, Associate Professor
School of Systems Science,
Beijing Normal University
No.19 Xinjiekouwai Street,
Beijing, 100875, China
liaoxuh...@gmail.com


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The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

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