Re: [Ifeffit] [PGPLOT build problem] Upgrading to ifeffit-1.2.11b on Ubuntu from source
Hi, This is my fault... and I apologize for the sloppiness and for being late in fixing this. I've been mixing 'development/testing' and 'production' versions, and haven't been very good at keeping them cleanly separated. I think I have this mostly under control now, but I will have to work on a decent test suite. I think I found another reason to make a 1.2.11c version too, that the mixing of devel and production caused an experiment in how fitting was done to be the default, so that the reported chi-square doesn't actually match the documentation (instead of summing real and imaginary parts, it sums real and magnitude components of the misfit, which is part of an experiment to see how Feff8.5 worked for XAFS. Using Magnitude as well Phase for another way to report chi-square and misfits is potentially a useful approach, but it's not what is documented. Anyway, mixing devel and production versions like this (for the past couple years, really) is very sloppy on my part, and I apologize again. I actually have an ubuntu box now, though I built pgplot from source, and have never made a .deb file. There is a new source kit at http://cars.uchicago.edu/~ifeffit/src/ifeffit-1.2.11c.tar.gz I'll post this to sourceforge this afternoon, and I'll also make a new DLL for Windows and post all of these on the download page. I'll also make a new updater for Windows. --Matt On Mon, Nov 17, 2008 at 10:07 AM, Mauro Rovezzi [EMAIL PROTECTED] wrote: Carlo Segre wrote: Hi Mauro: I have now produced a package of ifeffit 1.2.11b. It is in Debian unstable and available for Ubuntu intrepid and jaunty in my repository deb http://debian-xray.iit.edu intrepid main contrib non-free Carlo, Thank you very much for the package. Actually, I was able to build/install ifeffit 1.2.11b from source but not able to build than the Perl/Python wrappers and so no HoraeFriends from Bruce SVN. Well, now I have pgplot5, ifeffit, perl-ifeffit and python-ifeffit from binaries and libperlxray horae and demeter built from source (Bruce SVN). Everything seems fine but I still do not understand why ifeffit 1.2.11 has all these IFF str = * output as stated also by Gareth in his Ifeffit 1.2.11b terminal output post. Is it normal? Cheers, Mauro ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] [PGPLOT build problem] Upgrading to ifeffit-1.2.11b on Ubuntu from source
Hi Mauro: I have now produced a package of ifeffit 1.2.11b. It is in Debian unstable and available for Ubuntu intrepid and jaunty in my repository deb http://debian-xray.iit.edu intrepid main contrib non-free deb http://debian-xray.iit.edu jaunty main contrib non-free The version for jaunty will be replaced by the ubuntu version once it propagates into the archives. I have not built it for hardy but will if anyone has a need for it. Cheers, Carlo On Wed, 12 Nov 2008, Mauro Rovezzi wrote: Dear all, I decided to upgrade ifeffit-1.2.11 on my Ubuntu 8.10 (Intrepid Ibex) desktop machine. Well, up to now I have always worked with PGPLOT Ifeffit binaries from Carlo that are just working fine but seen that they are still not ready for the new version I decided to build them by source. First of all let me say that Ifeffit builds fine if I use the pgplot5 binary package, BUT, as stated by Matt in the README.PGPLOT, Ifeffit will compile without plotting support in this case. So the only way is to build also PGPLOT from source. Unfortunately the experience has failed both with the PGPLOT_install script and following steps in the install-unix.txt. I have tried many possibilities but the make process interrupts on the drivers compilations. Seen that following install-unix.txt gives the same error (but on another driver!) of PGPLOT_install, let's focus on this last procedure to try debugging the situation: $sudo ./PGPLOT_install ... [all fine until the PGPLOT make] [long list of errors + warnings like:] ... /home/mauro/local/ifeffit-1.2.11/pgplot/drivers/xwdriv_iff.c:4445: error: ‘XWdev’ has no member named ‘gc’ ... make: *** [xwdriv_iff.o] Error 1 ... [then the final error due to the bad compilation] collect2: ld returned 1 exit status make: *** [pgdemo1] Error 1 OK, I have described more or less the situation but I would not flood the list with technical mails, so if someone would help me with this issue we can continue in private and then send just the solution to the list. Anyway, the problem is not urgent seen that I can work with the 1.2.10 binary installation. Have a nice day! Mauro -- Carlo U. Segre -- Professor of Physics Associate Dean for Special Projects, Graduate College Illinois Institute of Technology Voice: 312.567.3498Fax: 312.567.3494 [EMAIL PROTECTED] http://www.iit.edu/~segre [EMAIL PROTECTED]___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
[Ifeffit] [PGPLOT build problem] Upgrading to ifeffit-1.2.11b on Ubuntu from source
Dear all, I decided to upgrade ifeffit-1.2.11 on my Ubuntu 8.10 (Intrepid Ibex) desktop machine. Well, up to now I have always worked with PGPLOT Ifeffit binaries from Carlo that are just working fine but seen that they are still not ready for the new version I decided to build them by source. First of all let me say that Ifeffit builds fine if I use the pgplot5 binary package, BUT, as stated by Matt in the README.PGPLOT, Ifeffit will compile without plotting support in this case. So the only way is to build also PGPLOT from source. Unfortunately the experience has failed both with the PGPLOT_install script and following steps in the install-unix.txt. I have tried many possibilities but the make process interrupts on the drivers compilations. Seen that following install-unix.txt gives the same error (but on another driver!) of PGPLOT_install, let's focus on this last procedure to try debugging the situation: $sudo ./PGPLOT_install ... [all fine until the PGPLOT make] [long list of errors + warnings like:] ... /home/mauro/local/ifeffit-1.2.11/pgplot/drivers/xwdriv_iff.c:4445: error: ‘XWdev’ has no member named ‘gc’ ... make: *** [xwdriv_iff.o] Error 1 ... [then the final error due to the bad compilation] collect2: ld returned 1 exit status make: *** [pgdemo1] Error 1 OK, I have described more or less the situation but I would not flood the list with technical mails, so if someone would help me with this issue we can continue in private and then send just the solution to the list. Anyway, the problem is not urgent seen that I can work with the 1.2.10 binary installation. Have a nice day! Mauro -- Mauro Rovezzi [EMAIL PROTECTED] PhD student - GILDA BM08 c/o ESRF (Grenoble, FR) ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] [PGPLOT build problem] Upgrading to ifeffit-1.2.11b on Ubuntu from source
Hi Gareth, Thank you for the answer! Gareth Jones wrote: Ifeffit ./configure --with-pgplot-link=-lpgplot using Ubuntu's PGPLOT package has always* worked for me, at least well enough for using Horae (I use gnuplot to save plots to files). I don't know then what's broken in the binary packages from Ifeffit's point of view, so hopefully someone more knowledgeble can clarify that, but if you just want plots in Athena and Artemis the --with-pgplot-link method seems to work. Your solution works! Now I have PGPLOT installed from the binary package pgplot5, Ifeffit 1.2.11b compiled using -lpgplot and everything seems to work fine. M. -- Mauro Rovezzi [EMAIL PROTECTED] PhD student - GILDA BM08 c/o ESRF (Grenoble, FR) ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] [PGPLOT build problem] Upgrading to ifeffit-1.2.11b on Ubuntu from source
Hi Marco: I apologize for being behind the curve on the new ifeffit. Too much work here at IIT. I think I will be able to put out a new ifeffit version in the next week or so. Carlo On Wed, 12 Nov 2008, Mauro Rovezzi wrote: Dear all, I decided to upgrade ifeffit-1.2.11 on my Ubuntu 8.10 (Intrepid Ibex) desktop machine. Well, up to now I have always worked with PGPLOT Ifeffit binaries from Carlo that are just working fine but seen that they are still not ready for the new version I decided to build them by source. -- Carlo U. Segre -- Professor of Physics Associate Dean for Special Projects, Graduate College Illinois Institute of Technology Voice: 312.567.3498Fax: 312.567.3494 [EMAIL PROTECTED] http://www.iit.edu/~segre [EMAIL PROTECTED] ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
Re: [Ifeffit] [PGPLOT build problem] Upgrading to ifeffit-1.2.11b on Ubuntu from source
Hi Mauro, Firstly, I should note that I'm still using Ubuntu 8.04, Horae 067 and Ifeffit 1.2.10a (I had a problem with Ifeffit 1.2.11 described in another post: Ifeffit 1.2.11b terminal output; I don't know if PGPLOT was the cause). I've always built Horae and Ifeffit from source rather than use binary packages. First of all let me say that Ifeffit builds fine if I use the pgplot5 binary package, BUT, as stated by Matt in the README.PGPLOT, Ifeffit will compile without plotting support in this case. Interesting, I'd never even noticed README.PGPLOT... Ifeffit ./configure --with-pgplot-link=-lpgplot using Ubuntu's PGPLOT package has always* worked for me, at least well enough for using Horae (I use gnuplot to save plots to files). I don't know then what's broken in the binary packages from Ifeffit's point of view, so hopefully someone more knowledgeble can clarify that, but if you just want plots in Athena and Artemis the --with-pgplot-link method seems to work. [* Some Ubuntu versions needed -lpng and -lX too, from memory, so if ld complains about missing symbols try adding these.] Gareth ___ Ifeffit mailing list Ifeffit@millenia.cars.aps.anl.gov http://millenia.cars.aps.anl.gov/mailman/listinfo/ifeffit
