Re: [Ifeffit] Questions about Athena and XANES

2008-02-21 Thread Jeff Terry

Hi Jenny,

I just wanted to add a bit to Matt's answer on TEY vs FY and suggest a  
couple of reference for you.


There are three contributions to the TEY: photoelectrons, Auger  
Electrons, and secondary electrons. The secondary electrons will  
typically determine the maximum depth that you can observe in a TEY  
measurement. There is a good description of this in Jo Stohr's book,  
NEXAFS Spectroscopy which can be seen at google books.

http://tiny.cc/44VGq

There is also a quick synopsis of the book at: 
http://www-ssrl.slac.stanford.edu/stohr/nexafs.htm
At this site, there is a photoelectron spectrum showing the relative  
intensity of Auger and Photopeaks. The secondaries are roughly a  
factor of 100 more intense than the other contributions.


It is possible to measure both TEY and Auger electron yield (AEY) and  
you will see that the AEY is more surface sensitive that TEY.  
Measuring AEY requires an analyzer capable of discriminating the  
electron energy. AEY is typically performed at lower photon energies  
as there are not too many electron energy analyzers at hard x-ray  
facilities.


It is actually pretty difficult to try to calculate the maximum  
analysis depth for TEY because of the three different contributions.  
Here is an attempt to understand the probe depth of TEY but neglects  
secondary electrons: http://www.icdd.com/resources/axa/vol44/v44_058.pdf


For the K-edges in the hard x-ray regime, with TEY it would not be  
unrealistic to expect probe depths on the order of 1000 angstroms (100  
nm).


Jeff

On Feb 20, 2008, at 6:33 PM, Jenny Cai wrote:


Hi all,

Could someone please answer my questions? I would really appreciate  
your help.


1. For linear combination fitting, there are three indicators for  
the goodness of fitting: R-factor, chi-square and reduced chi- 
square. Could anyone tell me how they work?


2. Since TEY is sensitive for the surface and FY for the bulk (and  
surface?), species detected by TEY should be also detected by FY,  
right?


3. How to calculate the maximum analysis depths for TEY and FY?

Thank you in advance.


Jenny Cai




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Re: [Ifeffit] Questions about Athena and XANES

2008-02-21 Thread Matt Newville
Hi Jeff,

Thanks -- you're right.  I was only considering Auger electrons which
are more surface sensitive than the secondary electrons that actually
dominate most TEY measurements.

--Matt
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[Ifeffit] Questions about Athena and XANES

2008-02-20 Thread Jenny Cai
Hi all,

Could someone please answer my questions? I would really appreciate your help.

1. For linear combination fitting, there are three indicators for the goodness 
of fitting: R-factor, chi-square and reduced chi-square. Could anyone tell me 
how they work?

2. Since TEY is sensitive for the surface and FY for the bulk (and surface?), 
species detected by TEY should be also detected by FY, right? 

3. How to calculate the maximum analysis depths for TEY and FY? 

Thank you in advance.


Jenny Cai
 



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Re: [Ifeffit] Questions about Athena and XANES

2008-02-20 Thread Matt Newville
Hi Jenny,

 1. For linear combination fitting, there are three indicators for the
 goodness of fitting: R-factor, chi-square and reduced chi-square. Could
 anyone tell me how they work?

This is actually documented in Athena, and the Users Guide.  They are
also defined in the Feffit documentation.   In short, they are all
scaled measures ofSum [(data-fit)^2]

R-factor scales this my the data values, and chi-square scales by an
estimate of the noise in the data.
Reduced chi-square relates to chi-square through the usual statistical
definition, in that it is
chi-square / (number of free variables in the fit).

Of course, chi-square requires one to know the uncertainty in the data
-- generally we don't have a great estimate of this.  I mean no
offense of this, but if you're asking about these then you almost
certainly haven't put in an estimate of the uncertainty.  So
chi-square is probably scaled incorrectly.

On top of that, reduced chi-square needs to know the number of
independent measurements. Normally one assumes each datum to be
independent.  This is arguable, but it we can make that assumption for
now.  But if chi-square is scaled poorly, so is reduced chi-square.

If that's too vague, or I misunderstood the question, please ask again.

 2. Since TEY is sensitive for the surface and FY for the bulk (and
 surface?), species detected by TEY should be also detected by FY, right?

Yes, but TEY samples a much smaller volume of material than FY, so the
signal from the volume seen by TEY (that is, the surface) may be
insignificant compared to the signal from the volume seen by FY.

 3. How to calculate the maximum analysis depths for TEY and FY?

Google/Wikipedia might help here.  The sampling depth for TEY is
typically dominated by the mean-free-path for the Auger electrons,
which is in the range of 20 - 50 Angstroms.Sampling depths for FY
are typically set by the absorption length of fluorescence x-rays,
which is in the range of 2 to 50 microns (yes, a much more variable
range, depending on sample composition).

In both cases, you'd need to calculate the depth that the x-ray beam
penetrates the sample (depends strongly on matrix) too.  In my
experience, it's unusual for this to dominate the sampling depth, but
it can be significant for FY in high-Z matrices.

--Matt
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