from:"bers \(Jira\)"

[jira] [Created] (ARROW-16003) Installing on R fails with hash mismatch for Boost

2022-03-22 Thread bers (Jira)

bers created ARROW-16003:


 Summary: Installing on R fails with hash mismatch for Boost
 Key: ARROW-16003
 URL: https://issues.apache.org/jira/browse/ARROW-16003
 Project: Apache Arrow
  Issue Type: Bug
  Components: R
Affects Versions: 7.0.0
Reporter: bers


`install.packages(arrow)` fails on Linux when downloading Boost due to a hash 
mismatch. The expected hash is 
267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61 according to 
https://github.com/apache/arrow/blob/master/cpp/thirdparty/versions.txt#L37, 
while the actual one is 
aeb26f80e80945e82ee93e5939baebdca47b9dee80a07d3144be1e1a6a66dd6a (in line with 
the official ones, https://www.boost.org/users/history/version_1_75_0.html).


{quote}CMake Error at boost_ep-stamp/boost_ep-download-RELEASE.cmake:37 
(message):
  Command failed: 1

   '/opt/cmake/bin/cmake' '-Dmake=' '-Dconfig=' '-P' 
'/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-RELEASE-impl.cmake'

  See also


/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log


-- stdout output is:
...skipping to end...
mplete]
-- [download 100% complete]
-- verifying file...
   
file='/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz'
-- SHA256 hash of
/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz
  does not match expected value
expected: '267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61'
  actual: 'aeb26f80e80945e82ee93e5939baebdca47b9dee80a07d3144be1e1a6a66dd6a'
-- Hash mismatch, removing...
-- Using 
src='https://sourceforge.net/projects/boost/files/boost/1.75.0/boost_1_75_0.tar.gz'
-- [download 100% complete]
-- [download 0% complete]
-- [download 100% complete]
-- verifying file...
   
file='/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz'
-- SHA256 hash of
/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz
  does not match expected value
expected: '267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61'
  actual: 'aeb26f80e80945e82ee93e5939baebdca47b9dee80a07d3144be1e1a6a66dd6a'
-- Hash mismatch, removing...
-- Using 
src='https://boostorg.jfrog.io/artifactory/main/release/1.75.0/source/boost_1_75_0.tar.gz'
-- [download 0% complete]
-- [download 100% complete]
-- verifying file...
   
file='/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz'
-- SHA256 hash of
/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz
  does not match expected value
expected: '267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61'
  actual: 'aeb26f80e80945e82ee93e5939baebdca47b9dee80a07d3144be1e1a6a66dd6a'
-- Hash mismatch, removing...
-- Using 
src='https://sourceforge.net/projects/boost/files/boost/1.75.0/boost_1_75_0.tar.gz'
-- [download 100% complete]
-- [download 0% complete]
-- [download 100% complete]
-- verifying file...
   
file='/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz'
-- SHA256 hash of
/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_1_75_0.tar.gz
  does not match expected value
expected: '267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61'
  actual: 'aeb26f80e80945e82ee93e5939baebdca47b9dee80a07d3144be1e1a6a66dd6a'
-- Hash mismatch, removing...

-- stderr output is:
CMake Error at boost_ep-stamp/download-boost_ep.cmake:170 (message):
  Each download failed!

error: downloading 
'https://apache.jfrog.io/artifactory/arrow/thirdparty/7.0.0/boost_1_75_0.tar.gz'
 failed
  status_code: 22
  status_string: "HTTP response code said error"
  log:


CMake Error at boost_ep-stamp/boost_ep-download-RELEASE-impl.cmake:9 (message):
  Command failed (1):

   '/opt/cmake/bin/cmake' '-P' 
'/tmp/RtmpHTgeAH/file48f93e4a54d3/boost_ep-prefix/src/boost_ep-stamp/download-boost_ep.cmake'



CMake Error at boost_ep-stamp/boost_ep-download-RELEASE.cmake:47 (message):
  Stopping after outputting logs.


make[2]: *** [CMakeFiles/boost_ep.dir/build.make:110: 
boost_ep-prefix/src/boost_ep-stamp/boost_ep-download] Error 1
make[1]: *** [CMakeFiles/Makefile2:1084: CMakeFiles/boost_ep.dir/all] Error 2
gmake: *** [Makefile:160: all] Error 2
 Error building Arrow C++.
- NOTE ---
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
-
ERROR: configuration failed for package ‘arrow’
* removing ‘/opt/R/4.1/library/arrow’

The downloaded source packages are in
‘/tmp/Rtmp0FpihC/downloaded_packages’
Warning message:
In install.packages("arrow") :
  installation of package ‘arrow’ had non-zero exit status
> remove.packages("arrow")
CMake Error at

[jira] [Created] (ARROW-12503) Cannot call io_MemoryMappedFileOpen()

2021-04-22 Thread bers (Jira)

bers created ARROW-12503:


 Summary: Cannot call io___MemoryMappedFile__Open()
 Key: ARROW-12503
 URL: https://issues.apache.org/jira/browse/ARROW-12503
 Project: Apache Arrow
  Issue Type: Bug
 Environment: R4.0.5
openSUSE Leap 15.2
Reporter: bers


I have checked 
[https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies|https://arrow.apache.org/docs/r/articles/install.html#package-installed-without-c-dependencies,]
 and that none of the known issues apply to me.

So then it's telling me to issue `[arrow::install_arrow(verbose = 
TRUE)|https://arrow.apache.org/docs/r/reference/install_arrow.html]`, which I 
did. Here's the output:

 

 

```

> arrow::install_arrow(verbose = TRUE)
Installing package into ‘/data2/bers/opt/R/4.0/library’
(as ‘lib’ is unspecified)
trying URL 'https://cran.r-project.org/src/contrib/arrow_3.0.0.tar.gz'
Content type 'application/x-gzip' length 344814 bytes (336 KB)
==
downloaded 336 KB

* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
trying URL 
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) : 
 cannot open URL 
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/opensuse-15/arrow-3.0.0.zip'
*** No C++ binaries found for opensuse-15
trying URL 
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) : 
 cannot open URL 
'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
trying URL 
'https://www.apache.org/dyn/closer.lua?action=download=arrow/arrow-3.0.0/apache-arrow-3.0.0.tar.gz'
Content type 'application/x-gzip' length 8200790 bytes (7.8 MB)
==
downloaded 7.8 MB

*** Successfully retrieved C++ source
*** Building C++ libraries
*** Building with MAKEFLAGS= -j2 
 arrow with 
SOURCE_DIR="/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp" 
BUILD_DIR="/tmp/RtmpOXZGhl/file1568178b21a6" DEST_DIR="libarrow/arrow-3.0.0" 
CMAKE="/data2/bers/opt/cmake/bin/cmake" CC="gcc" CXX="g++ -std=gnu++11" 
LDFLAGS="-L/usr/local/lib64" ARROW_S3=ON ARROW_MIMALLOC=ON 
++ pwd
+ : /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
+ : /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
+ : /tmp/RtmpOXZGhl/file1568178b21a6
+ : libarrow/arrow-3.0.0
+ : /data2/bers/opt/cmake/bin/cmake
++ cd /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
++ pwd
+ SOURCE_DIR=/tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
++ mkdir -p libarrow/arrow-3.0.0
++ cd libarrow/arrow-3.0.0
++ pwd
+ DEST_DIR=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
+ '[' '' = '' ']'
+ which ninja
+ '[' FALSE = false ']'
+ ARROW_DEFAULT_PARAM=OFF
+ mkdir -p /tmp/RtmpOXZGhl/file1568178b21a6
+ pushd /tmp/RtmpOXZGhl/file1568178b21a6
/tmp/RtmpOXZGhl/file1568178b21a6 /tmp/RtmppXbaGR/R.INSTALL155322509007/arrow
+ /data2/bers/opt/cmake/bin/cmake -DARROW_BOOST_USE_SHARED=OFF 
-DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON 
-DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON 
-DARROW_DEPENDENCY_SOURCE=BUNDLED -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON 
-DARROW_MIMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=ON 
-DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=OFF 
-DARROW_WITH_SNAPPY=OFF -DARROW_WITH_UTF8PROC=OFF -DARROW_WITH_ZLIB=OFF 
-DARROW_WITH_ZSTD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib 
-DCMAKE_INSTALL_PREFIX=/tmp/RtmppXbaGR/R.INSTALL155322509007/arrow/libarrow/arrow-3.0.0
 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON 
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -G 'Unix 
Makefiles' /tmp/RtmpOXZGhl/file156868fe52ec/apache-arrow-3.0.0/cpp
-- Building using CMake version: 3.19.5
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 3.0.0 (full: '3.0.0')
-- Arrow SO version: 300 (full: 300.0.0)
-- clang-tidy not found
-- clang-format not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN) 
-- infer not found
fatal: not a git repository (or any of the parent directories): .git
-- Could NOT find Python3 (missing: Python3_EXECUTABLE Interpreter) 
 Reason given by package: 
 Interpreter: Cannot use the interpreter

[jira] [Created] (ARROW-16003) Installing on R fails with hash mismatch for Boost

[jira] [Created] (ARROW-12503) Cannot call io_MemoryMappedFileOpen()

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[jira] [Created] (ARROW-16003) Installing on R fails with hash mismatch for Boost

[jira] [Created] (ARROW-12503) Cannot call io___MemoryMappedFile__Open()

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[jira] [Created] (ARROW-12503) Cannot call io_MemoryMappedFileOpen()