[jira] [Updated] (SPARK-26796) Testcases failing with "org.apache.hadoop.fs.ChecksumException" error
[ https://issues.apache.org/jira/browse/SPARK-26796?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Anuja Jakhade updated SPARK-26796: -- Environment: Ubuntu 16.04 Java Version openjdk version "1.8.0_192" OpenJDK Runtime Environment (build 1.8.0_192-b12_openj9) Eclipse OpenJ9 VM (build openj9-0.11.0, JRE 1.8.0 Linux s390x-64-Bit Compressed References 20181107_80 (JIT enabled, AOT enabled) OpenJ9 - 090ff9dcd OMR - ea548a66 JCL - b5a3affe73 based on jdk8u192-b12) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar was: Ubuntu 16.04 Java Version openjdk version "1.8.0_191" OpenJDK Runtime Environment (build 1.8.0_191-8u191-b12-0ubuntu0.16.04.1-b12) OpenJDK 64-Bit Zero VM (build 25.191-b12, interpreted mode) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > Testcases failing with "org.apache.hadoop.fs.ChecksumException" error > - > > Key: SPARK-26796 > URL: https://issues.apache.org/jira/browse/SPARK-26796 > Project: Spark > Issue Type: Bug > Components: Tests >Affects Versions: 2.3.2, 2.4.0 > Environment: Ubuntu 16.04 > Java Version > openjdk version "1.8.0_192" > OpenJDK Runtime Environment (build 1.8.0_192-b12_openj9) > Eclipse OpenJ9 VM (build openj9-0.11.0, JRE 1.8.0 Linux s390x-64-Bit > Compressed References 20181107_80 (JIT enabled, AOT enabled) > OpenJ9 - 090ff9dcd > OMR - ea548a66 > JCL - b5a3affe73 based on jdk8u192-b12) > > Hadoop Version > Hadoop 2.7.1 > Subversion Unknown -r Unknown > Compiled by test on 2019-01-29T09:09Z > Compiled with protoc 2.5.0 > From source with checksum 5e94a235f9a71834e2eb73fb36ee873f > This command was run using > /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > > > >Reporter: Anuja Jakhade >Priority: Major > > Observing test case failures due to Checksum error > Below is the error log > [ERROR] checkpointAndComputation(test.org.apache.spark.JavaAPISuite) Time > elapsed: 1.232 s <<< ERROR! > org.apache.spark.SparkException: > Job aborted due to stage failure: Task 0 in stage 2.0 failed 1 times, most > recent failure: Lost task 0.0 in stage 2.0 (TID 2, localhost, executor > driver): org.apache.hadoop.fs.ChecksumException: Checksum error: > file:/home/test/spark/core/target/tmp/1548319689411-0/fd0ba388-539c-49aa-bf76-e7d50aa2d1fc/rdd-0/part-0 > at 0 exp: 222499834 got: 1400184476 > at org.apache.hadoop.fs.FSInputChecker.verifySums(FSInputChecker.java:323) > at > org.apache.hadoop.fs.FSInputChecker.readChecksumChunk(FSInputChecker.java:279) > at org.apache.hadoop.fs.FSInputChecker.fill(FSInputChecker.java:214) > at org.apache.hadoop.fs.FSInputChecker.read1(FSInputChecker.java:232) > at org.apache.hadoop.fs.FSInputChecker.read(FSInputChecker.java:196) > at java.io.DataInputStream.read(DataInputStream.java:149) > at > java.io.ObjectInputStream$PeekInputStream.read(ObjectInputStream.java:2769) > at > java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2785) > at > java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:3262) > at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:968) > at java.io.ObjectInputStream.(ObjectInputStream.java:390) > at > org.apache.spark.serializer.JavaDeserializationStream$$anon$1.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaDeserializationStream.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaSerializerInstance.deserializeStream(JavaSerializer.scala:122) > at > org.apache.spark.rdd.ReliableCheckpointRDD$.readCheckpointFile(ReliableCheckpointRDD.scala:300) > at > org.apache.spark.rdd.ReliableCheckpointRDD.compute(ReliableCheckpointRDD.scala:100) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:322) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) > at org.apache.spark.scheduler.Task.run(Task.scala:109) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) > at >
[jira] [Updated] (SPARK-26796) Testcases failing with "org.apache.hadoop.fs.ChecksumException" error
[ https://issues.apache.org/jira/browse/SPARK-26796?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Anuja Jakhade updated SPARK-26796: -- Environment: Ubuntu 16.04 Java Version openjdk version "1.8.0_192" OpenJDK Runtime Environment (build 1.8.0_192-b12_openj9) Eclipse OpenJ9 VM (build openj9-0.11.0, JRE 1.8.0 Compressed References 20181107_80 (JIT enabled, AOT enabled) OpenJ9 - 090ff9dcd OMR - ea548a66 JCL - b5a3affe73 based on jdk8u192-b12) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar was: Ubuntu 16.04 Java Version openjdk version "1.8.0_192" OpenJDK Runtime Environment (build 1.8.0_192-b12_openj9) Eclipse OpenJ9 VM (build openj9-0.11.0, JRE 1.8.0 Linux s390x-64-Bit Compressed References 20181107_80 (JIT enabled, AOT enabled) OpenJ9 - 090ff9dcd OMR - ea548a66 JCL - b5a3affe73 based on jdk8u192-b12) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > Testcases failing with "org.apache.hadoop.fs.ChecksumException" error > - > > Key: SPARK-26796 > URL: https://issues.apache.org/jira/browse/SPARK-26796 > Project: Spark > Issue Type: Bug > Components: Tests >Affects Versions: 2.3.2, 2.4.0 > Environment: Ubuntu 16.04 > Java Version > openjdk version "1.8.0_192" > OpenJDK Runtime Environment (build 1.8.0_192-b12_openj9) > Eclipse OpenJ9 VM (build openj9-0.11.0, JRE 1.8.0 Compressed References > 20181107_80 (JIT enabled, AOT enabled) > OpenJ9 - 090ff9dcd > OMR - ea548a66 > JCL - b5a3affe73 based on jdk8u192-b12) > > Hadoop Version > Hadoop 2.7.1 > Subversion Unknown -r Unknown > Compiled by test on 2019-01-29T09:09Z > Compiled with protoc 2.5.0 > From source with checksum 5e94a235f9a71834e2eb73fb36ee873f > This command was run using > /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > > > >Reporter: Anuja Jakhade >Priority: Major > > Observing test case failures due to Checksum error > Below is the error log > [ERROR] checkpointAndComputation(test.org.apache.spark.JavaAPISuite) Time > elapsed: 1.232 s <<< ERROR! > org.apache.spark.SparkException: > Job aborted due to stage failure: Task 0 in stage 2.0 failed 1 times, most > recent failure: Lost task 0.0 in stage 2.0 (TID 2, localhost, executor > driver): org.apache.hadoop.fs.ChecksumException: Checksum error: > file:/home/test/spark/core/target/tmp/1548319689411-0/fd0ba388-539c-49aa-bf76-e7d50aa2d1fc/rdd-0/part-0 > at 0 exp: 222499834 got: 1400184476 > at org.apache.hadoop.fs.FSInputChecker.verifySums(FSInputChecker.java:323) > at > org.apache.hadoop.fs.FSInputChecker.readChecksumChunk(FSInputChecker.java:279) > at org.apache.hadoop.fs.FSInputChecker.fill(FSInputChecker.java:214) > at org.apache.hadoop.fs.FSInputChecker.read1(FSInputChecker.java:232) > at org.apache.hadoop.fs.FSInputChecker.read(FSInputChecker.java:196) > at java.io.DataInputStream.read(DataInputStream.java:149) > at > java.io.ObjectInputStream$PeekInputStream.read(ObjectInputStream.java:2769) > at > java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2785) > at > java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:3262) > at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:968) > at java.io.ObjectInputStream.(ObjectInputStream.java:390) > at > org.apache.spark.serializer.JavaDeserializationStream$$anon$1.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaDeserializationStream.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaSerializerInstance.deserializeStream(JavaSerializer.scala:122) > at > org.apache.spark.rdd.ReliableCheckpointRDD$.readCheckpointFile(ReliableCheckpointRDD.scala:300) > at > org.apache.spark.rdd.ReliableCheckpointRDD.compute(ReliableCheckpointRDD.scala:100) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:322) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) > at org.apache.spark.scheduler.Task.run(Task.scala:109) > at
[jira] [Updated] (SPARK-26796) Testcases failing with "org.apache.hadoop.fs.ChecksumException" error
[ https://issues.apache.org/jira/browse/SPARK-26796?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Anuja Jakhade updated SPARK-26796: -- Environment: Ubuntu 16.04 Java Version openjdk version "1.8.0_191" OpenJDK Runtime Environment (build 1.8.0_191-8u191-b12-0ubuntu0.16.04.1-b12) OpenJDK 64-Bit Zero VM (build 25.191-b12, interpreted mode) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar was: I am working on Ubuntu 16.04 Java Version openjdk version "1.8.0_191" OpenJDK Runtime Environment (build 1.8.0_191-8u191-b12-0ubuntu0.16.04.1-b12) OpenJDK 64-Bit Zero VM (build 25.191-b12, interpreted mode) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > Testcases failing with "org.apache.hadoop.fs.ChecksumException" error > - > > Key: SPARK-26796 > URL: https://issues.apache.org/jira/browse/SPARK-26796 > Project: Spark > Issue Type: Bug > Components: Tests >Affects Versions: 2.3.2, 2.4.0 > Environment: Ubuntu 16.04 > Java Version > openjdk version "1.8.0_191" > OpenJDK Runtime Environment (build 1.8.0_191-8u191-b12-0ubuntu0.16.04.1-b12) > OpenJDK 64-Bit Zero VM (build 25.191-b12, interpreted mode) > > Hadoop Version > Hadoop 2.7.1 > Subversion Unknown -r Unknown > Compiled by test on 2019-01-29T09:09Z > Compiled with protoc 2.5.0 > From source with checksum 5e94a235f9a71834e2eb73fb36ee873f > This command was run using > /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > > > >Reporter: Anuja Jakhade >Priority: Major > > Observing test case failures due to Checksum error > Below is the error log > [ERROR] checkpointAndComputation(test.org.apache.spark.JavaAPISuite) Time > elapsed: 1.232 s <<< ERROR! > org.apache.spark.SparkException: > Job aborted due to stage failure: Task 0 in stage 2.0 failed 1 times, most > recent failure: Lost task 0.0 in stage 2.0 (TID 2, localhost, executor > driver): org.apache.hadoop.fs.ChecksumException: Checksum error: > file:/home/test/spark/core/target/tmp/1548319689411-0/fd0ba388-539c-49aa-bf76-e7d50aa2d1fc/rdd-0/part-0 > at 0 exp: 222499834 got: 1400184476 > at org.apache.hadoop.fs.FSInputChecker.verifySums(FSInputChecker.java:323) > at > org.apache.hadoop.fs.FSInputChecker.readChecksumChunk(FSInputChecker.java:279) > at org.apache.hadoop.fs.FSInputChecker.fill(FSInputChecker.java:214) > at org.apache.hadoop.fs.FSInputChecker.read1(FSInputChecker.java:232) > at org.apache.hadoop.fs.FSInputChecker.read(FSInputChecker.java:196) > at java.io.DataInputStream.read(DataInputStream.java:149) > at > java.io.ObjectInputStream$PeekInputStream.read(ObjectInputStream.java:2769) > at > java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2785) > at > java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:3262) > at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:968) > at java.io.ObjectInputStream.(ObjectInputStream.java:390) > at > org.apache.spark.serializer.JavaDeserializationStream$$anon$1.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaDeserializationStream.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaSerializerInstance.deserializeStream(JavaSerializer.scala:122) > at > org.apache.spark.rdd.ReliableCheckpointRDD$.readCheckpointFile(ReliableCheckpointRDD.scala:300) > at > org.apache.spark.rdd.ReliableCheckpointRDD.compute(ReliableCheckpointRDD.scala:100) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:322) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) > at org.apache.spark.scheduler.Task.run(Task.scala:109) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) > at java.lang.Thread.run(Thread.java:813) > Driver stacktrace: > at >
[jira] [Updated] (SPARK-26796) Testcases failing with "org.apache.hadoop.fs.ChecksumException" error
[ https://issues.apache.org/jira/browse/SPARK-26796?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ] Anuja Jakhade updated SPARK-26796: -- Environment: I am working on Ubuntu 16.04 Java Version openjdk version "1.8.0_191" OpenJDK Runtime Environment (build 1.8.0_191-8u191-b12-0ubuntu0.16.04.1-b12) OpenJDK 64-Bit Zero VM (build 25.191-b12, interpreted mode) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar was: I am working on Ubuntu 16.04 on s390x. Java Version openjdk version "1.8.0_191" OpenJDK Runtime Environment (build 1.8.0_191-8u191-b12-0ubuntu0.16.04.1-b12) OpenJDK 64-Bit Zero VM (build 25.191-b12, interpreted mode) Hadoop Version Hadoop 2.7.1 Subversion Unknown -r Unknown Compiled by test on 2019-01-29T09:09Z Compiled with protoc 2.5.0 >From source with checksum 5e94a235f9a71834e2eb73fb36ee873f This command was run using /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > Testcases failing with "org.apache.hadoop.fs.ChecksumException" error > - > > Key: SPARK-26796 > URL: https://issues.apache.org/jira/browse/SPARK-26796 > Project: Spark > Issue Type: Bug > Components: Tests >Affects Versions: 2.3.2, 2.4.0 > Environment: I am working on Ubuntu 16.04 > Java Version > openjdk version "1.8.0_191" > OpenJDK Runtime Environment (build 1.8.0_191-8u191-b12-0ubuntu0.16.04.1-b12) > OpenJDK 64-Bit Zero VM (build 25.191-b12, interpreted mode) > > Hadoop Version > Hadoop 2.7.1 > Subversion Unknown -r Unknown > Compiled by test on 2019-01-29T09:09Z > Compiled with protoc 2.5.0 > From source with checksum 5e94a235f9a71834e2eb73fb36ee873f > This command was run using > /home/test/hadoop-release-2.7.1/hadoop-dist/target/hadoop-2.7.1/share/hadoop/common/hadoop-common-2.7.1.jar > > > >Reporter: Anuja Jakhade >Priority: Major > > Observing test case failures due to Checksum error > Below is the error log > [ERROR] checkpointAndComputation(test.org.apache.spark.JavaAPISuite) Time > elapsed: 1.232 s <<< ERROR! > org.apache.spark.SparkException: > Job aborted due to stage failure: Task 0 in stage 2.0 failed 1 times, most > recent failure: Lost task 0.0 in stage 2.0 (TID 2, localhost, executor > driver): org.apache.hadoop.fs.ChecksumException: Checksum error: > file:/home/test/spark/core/target/tmp/1548319689411-0/fd0ba388-539c-49aa-bf76-e7d50aa2d1fc/rdd-0/part-0 > at 0 exp: 222499834 got: 1400184476 > at org.apache.hadoop.fs.FSInputChecker.verifySums(FSInputChecker.java:323) > at > org.apache.hadoop.fs.FSInputChecker.readChecksumChunk(FSInputChecker.java:279) > at org.apache.hadoop.fs.FSInputChecker.fill(FSInputChecker.java:214) > at org.apache.hadoop.fs.FSInputChecker.read1(FSInputChecker.java:232) > at org.apache.hadoop.fs.FSInputChecker.read(FSInputChecker.java:196) > at java.io.DataInputStream.read(DataInputStream.java:149) > at > java.io.ObjectInputStream$PeekInputStream.read(ObjectInputStream.java:2769) > at > java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2785) > at > java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:3262) > at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:968) > at java.io.ObjectInputStream.(ObjectInputStream.java:390) > at > org.apache.spark.serializer.JavaDeserializationStream$$anon$1.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaDeserializationStream.(JavaSerializer.scala:63) > at > org.apache.spark.serializer.JavaSerializerInstance.deserializeStream(JavaSerializer.scala:122) > at > org.apache.spark.rdd.ReliableCheckpointRDD$.readCheckpointFile(ReliableCheckpointRDD.scala:300) > at > org.apache.spark.rdd.ReliableCheckpointRDD.compute(ReliableCheckpointRDD.scala:100) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:324) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:322) > at org.apache.spark.rdd.RDD.iterator(RDD.scala:288) > at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) > at org.apache.spark.scheduler.Task.run(Task.scala:109) > at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) > at > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) > at > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) > at java.lang.Thread.run(Thread.java:813) > Driver
