Re: [Jmol-users] How can i show the total molecule tegether

2010-02-02 Thread houyang chen
Hi. Bob,
Thanks so much for your kindly reply.
The box is 20*20*20.
When I load it with follows command
load "010.xyz" { 1 1 1} spacegroup "P1" unitcell "20.0 20.0 20.0 90 90 90"
It just shows one box.
How can I show more boxes?
Thanks so much!

Houyang

Date: Mon, 1 Feb 2010 16:04:54 -0600
From: Robert Hanson 
Subject: Re: [Jmol-users] How can i show the total molecule tegether
   in  JMOL? Thanks.
To: jmol-users@lists.sourceforge.net
Message-ID:
   
Content-Type: text/plain; charset="iso-8859-1"
What sort of file is it?
You need to load the file with symmetry and unit cell and load more than one
unit cell. Something like:
 load "caffeine.xyz" {1 1 1} spacegroup "P1" unitcell "10.0 10.0 10.0 90 90
90"
However this does not work with all file types. But that can be fixed...
Bob
--
The Planet: dedicated and managed hosting, cloud storage, colocation
Stay online with enterprise data centers and the best network in the business
Choose flexible plans and management services without long-term contracts
Personal 24x7 support from experience hosting pros just a phone call away.
http://p.sf.net/sfu/theplanet-com___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users


[Jmol-users] How can i show the total molecule tegether in JMOL? Thanks.

2010-02-01 Thread houyang chen
Hello, everyone,

I got a result of molecules coordinates from simulation.
When i shown it by JMOL, i found part of molecule is in the left side of x
axis in the box; and the other part
is in the right side of x axis in the box.
This is cause by the period bound condition in the simulation.
How can i show the total molecule tegether in JMOL?

Thanks.

Houyang
--
The Planet: dedicated and managed hosting, cloud storage, colocation
Stay online with enterprise data centers and the best network in the business
Choose flexible plans and management services without long-term contracts
Personal 24x7 support from experience hosting pros just a phone call away.
http://p.sf.net/sfu/theplanet-com___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users