Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Mukhtar Ullah
Gregory Jefferis jefferis at gmail.com writes:

 
 Hello,
 
 We currently used Adobe Illustrator to construct quite complex figures for
Biological Science
 manuscripts. We save in PDF compatible format and then directly place these in
my lyx document. Apart from
 being expensive, the main problem is that Illustrator always saves the
absolute path to any linked file
 causing trouble when colleagues edit these files on different machines.
 
 Our figures mostly consist of linked PDFs, some type e.g. for labels and a
small amount of drawing for
 annotation. I would like to switch to a FOSS alternative that allows PDFs to
be linked (not embedded). The
 detailed layout of the elements is important. The closest I have found so far
is Inkscape, but this always
 embeds PDF on import. Likewise it does not yet seem to be able to support
linked SVG files.
 
 Would anyone have any suggestions? Many thanks,
 
 Greg.
 
 http://inkscape.org/
 
 --
 Gregory Jefferis Lab:  jefferislab at gmail.com
 Division of Neurobiology   
 MRC Laboratory of Molecular Biology,   
 Hills Road,
 Cambridge, CB2 0QH, UK.
 
 http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis
 http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2
 http://flybrain.stanford.edu
 
 

Scribus is what you need.
http://scribus.net/canvas/Scribus

Mukhtar




Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Gregory Jefferis

On 14 Feb 2013, at 09:58, Mukhtar Ullah wrote:

 Scribus is what you need.
 http://scribus.net/canvas/Scribus

Thanks a lot for the suggestion, I'll look into that more carefully. But do you 
know if it can 

1) include linked pdfs (ie so that content will update when the external file 
updates)
2) do so retaining vector elements in the linked PDF (rather than immediately 
rasterising).

Many thanks,

Greg.

Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Mukhtar Ullah

Greg,
Yes, it links pdf, eps, and other vector formats instead of embedding. I 
don't remember if it can link svg. It retains vector elements and fonts 
if you use the option Embed eps  pdf files (experimental) while 
exporting finally to pdf.


Best regards,
Mukhtar

On 14/02/2013 12:18, Gregory Jefferis wrote:

On 14 Feb 2013, at 09:58, Mukhtar Ullah wrote:


Scribus is what you need.
http://scribus.net/canvas/Scribus

Thanks a lot for the suggestion, I'll look into that more carefully. But do you 
know if it can

1) include linked pdfs (ie so that content will update when the external file 
updates)
2) do so retaining vector elements in the linked PDF (rather than immediately 
rasterising).

Many thanks,

Greg.


--
Dr. Ing. Mukhtar Ullah, Dept. of Systems Biology  Bioinformatics, 
Institute of Computer Science University of Rostock 18051 Rostock, 
Germany http://www.sbi.uni-rostock.de/team/single/dr-mukhtar-ullah/


Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Mukhtar Ullah
Gregory Jefferis jefferis at gmail.com writes:

 
 Hello,
 
 We currently used Adobe Illustrator to construct quite complex figures for
Biological Science
 manuscripts. We save in PDF compatible format and then directly place these in
my lyx document. Apart from
 being expensive, the main problem is that Illustrator always saves the
absolute path to any linked file
 causing trouble when colleagues edit these files on different machines.
 
 Our figures mostly consist of linked PDFs, some type e.g. for labels and a
small amount of drawing for
 annotation. I would like to switch to a FOSS alternative that allows PDFs to
be linked (not embedded). The
 detailed layout of the elements is important. The closest I have found so far
is Inkscape, but this always
 embeds PDF on import. Likewise it does not yet seem to be able to support
linked SVG files.
 
 Would anyone have any suggestions? Many thanks,
 
 Greg.
 
 http://inkscape.org/
 
 --
 Gregory Jefferis Lab:  jefferislab at gmail.com
 Division of Neurobiology   
 MRC Laboratory of Molecular Biology,   
 Hills Road,
 Cambridge, CB2 0QH, UK.
 
 http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis
 http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2
 http://flybrain.stanford.edu
 
 

Scribus is what you need.
http://scribus.net/canvas/Scribus

Mukhtar




Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Gregory Jefferis

On 14 Feb 2013, at 09:58, Mukhtar Ullah wrote:

 Scribus is what you need.
 http://scribus.net/canvas/Scribus

Thanks a lot for the suggestion, I'll look into that more carefully. But do you 
know if it can 

1) include linked pdfs (ie so that content will update when the external file 
updates)
2) do so retaining vector elements in the linked PDF (rather than immediately 
rasterising).

Many thanks,

Greg.

Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Mukhtar Ullah

Greg,
Yes, it links pdf, eps, and other vector formats instead of embedding. I 
don't remember if it can link svg. It retains vector elements and fonts 
if you use the option Embed eps  pdf files (experimental) while 
exporting finally to pdf.


Best regards,
Mukhtar

On 14/02/2013 12:18, Gregory Jefferis wrote:

On 14 Feb 2013, at 09:58, Mukhtar Ullah wrote:


Scribus is what you need.
http://scribus.net/canvas/Scribus

Thanks a lot for the suggestion, I'll look into that more carefully. But do you 
know if it can

1) include linked pdfs (ie so that content will update when the external file 
updates)
2) do so retaining vector elements in the linked PDF (rather than immediately 
rasterising).

Many thanks,

Greg.


--
Dr. Ing. Mukhtar Ullah, Dept. of Systems Biology  Bioinformatics, 
Institute of Computer Science University of Rostock 18051 Rostock, 
Germany http://www.sbi.uni-rostock.de/team/single/dr-mukhtar-ullah/


Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Mukhtar Ullah
Gregory Jefferis  gmail.com> writes:

> 
> Hello,
> 
> We currently used Adobe Illustrator to construct quite complex figures for
Biological Science
> manuscripts. We save in PDF compatible format and then directly place these in
my lyx document. Apart from
> being expensive, the main problem is that Illustrator always saves the
absolute path to any linked file
> causing trouble when colleagues edit these files on different machines.
> 
> Our figures mostly consist of linked PDFs, some type e.g. for labels and a
small amount of drawing for
> annotation. I would like to switch to a FOSS alternative that allows PDFs to
be linked (not embedded). The
> detailed layout of the elements is important. The closest I have found so far
is Inkscape, but this always
> embeds PDF on import. Likewise it does not yet seem to be able to support
linked SVG files.
> 
> Would anyone have any suggestions? Many thanks,
> 
> Greg.
> 
> http://inkscape.org/
> 
> --
> Gregory Jefferis Lab:  jefferislab  gmail.com
> Division of Neurobiology   
> MRC Laboratory of Molecular Biology,   
> Hills Road,
> Cambridge, CB2 0QH, UK.
> 
> http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis
> http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2
> http://flybrain.stanford.edu
> 
> 

Scribus is what you need.
http://scribus.net/canvas/Scribus

Mukhtar




Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Gregory Jefferis

On 14 Feb 2013, at 09:58, Mukhtar Ullah wrote:

> Scribus is what you need.
> http://scribus.net/canvas/Scribus

Thanks a lot for the suggestion, I'll look into that more carefully. But do you 
know if it can 

1) include linked pdfs (ie so that content will update when the external file 
updates)
2) do so retaining vector elements in the linked PDF (rather than immediately 
rasterising).

Many thanks,

Greg.

Re: OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-14 Thread Mukhtar Ullah

Greg,
Yes, it links pdf, eps, and other vector formats instead of embedding. I 
don't remember if it can link svg. It retains vector elements and fonts 
if you use the option "Embed eps & pdf files (experimental)" while 
exporting finally to pdf.


Best regards,
Mukhtar

On 14/02/2013 12:18, Gregory Jefferis wrote:

On 14 Feb 2013, at 09:58, Mukhtar Ullah wrote:


Scribus is what you need.
http://scribus.net/canvas/Scribus

Thanks a lot for the suggestion, I'll look into that more carefully. But do you 
know if it can

1) include linked pdfs (ie so that content will update when the external file 
updates)
2) do so retaining vector elements in the linked PDF (rather than immediately 
rasterising).

Many thanks,

Greg.


--
Dr. Ing. Mukhtar Ullah, Dept. of Systems Biology & Bioinformatics, 
Institute of Computer Science University of Rostock 18051 Rostock, 
Germany http://www.sbi.uni-rostock.de/team/single/dr-mukhtar-ullah/


OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-13 Thread Gregory Jefferis
Hello,

We currently used Adobe Illustrator to construct quite complex figures for 
Biological Science manuscripts. We save in PDF compatible format and then 
directly place these in my lyx document. Apart from being expensive, the main 
problem is that Illustrator always saves the absolute path to any linked file 
causing trouble when colleagues edit these files on different machines.

Our figures mostly consist of linked PDFs, some type e.g. for labels and a 
small amount of drawing for annotation. I would like to switch to a FOSS 
alternative that allows PDFs to be linked (not embedded). The detailed layout 
of the elements is important. The closest I have found so far is Inkscape, but 
this always embeds PDF on import. Likewise it does not yet seem to be able to 
support linked SVG files.

Would anyone have any suggestions? Many thanks,

Greg.

http://inkscape.org/

--
Gregory Jefferis Lab:  jefferis...@gmail.com
Division of Neurobiology   
MRC Laboratory of Molecular Biology,   
Hills Road,
Cambridge, CB2 0QH, UK.

http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis
http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2
http://flybrain.stanford.edu



OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-13 Thread Gregory Jefferis
Hello,

We currently used Adobe Illustrator to construct quite complex figures for 
Biological Science manuscripts. We save in PDF compatible format and then 
directly place these in my lyx document. Apart from being expensive, the main 
problem is that Illustrator always saves the absolute path to any linked file 
causing trouble when colleagues edit these files on different machines.

Our figures mostly consist of linked PDFs, some type e.g. for labels and a 
small amount of drawing for annotation. I would like to switch to a FOSS 
alternative that allows PDFs to be linked (not embedded). The detailed layout 
of the elements is important. The closest I have found so far is Inkscape, but 
this always embeds PDF on import. Likewise it does not yet seem to be able to 
support linked SVG files.

Would anyone have any suggestions? Many thanks,

Greg.

http://inkscape.org/

--
Gregory Jefferis Lab:  jefferis...@gmail.com
Division of Neurobiology   
MRC Laboratory of Molecular Biology,   
Hills Road,
Cambridge, CB2 0QH, UK.

http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis
http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2
http://flybrain.stanford.edu



OTish: Illustrator alternative to collect linked PDFs into single figure

2013-02-13 Thread Gregory Jefferis
Hello,

We currently used Adobe Illustrator to construct quite complex figures for 
Biological Science manuscripts. We save in PDF compatible format and then 
directly place these in my lyx document. Apart from being expensive, the main 
problem is that Illustrator always saves the absolute path to any linked file 
causing trouble when colleagues edit these files on different machines.

Our figures mostly consist of linked PDFs, some type e.g. for labels and a 
small amount of drawing for annotation. I would like to switch to a FOSS 
alternative that allows PDFs to be linked (not embedded). The detailed layout 
of the elements is important. The closest I have found so far is Inkscape, but 
this always embeds PDF on import. Likewise it does not yet seem to be able to 
support linked SVG files.

Would anyone have any suggestions? Many thanks,

Greg.

http://inkscape.org/

--
Gregory Jefferis Lab:  jefferis...@gmail.com
Division of Neurobiology   
MRC Laboratory of Molecular Biology,   
Hills Road,
Cambridge, CB2 0QH, UK.

http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis
http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2
http://flybrain.stanford.edu