Problem with arpack

2013-10-31 Thread Marcelo Chiapparini
Hi,

I am running Ports in ML. The error below is a long standing one in my
system. Any suggestion to fix it? Thanks in advance!

$ sudo port upgrade outdated
Password:
Error: arpack: Variant openmpi conflicts with gcc45
Error: Unable to open port: Error evaluating variants
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets

Marcelo
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Re: Problem with arpack

2013-10-31 Thread Marcelo Chiapparini
Thank you very much Brandon, it worked!

cheers, Marcelo


2013/10/31 Brandon Allbery allber...@gmail.com

 On Thu, Oct 31, 2013 at 8:45 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 I am running Ports in ML. The error below is a long standing one in my
 system. Any suggestion to fix it? Thanks in advance!

 $ sudo port upgrade outdated
 Password:
 Error: arpack: Variant openmpi conflicts with gcc45


 The old setup for openmpi was found to cause compiler conflicts in some
 cases, since openmpi itself wraps a compiler and the same compiler must be
 used to build other libraries in some cases (and it's not really possible
 to delineate just those cases).

 The simple fix is:

 sudo port upgrade --enforce-variants arpack -gcc45 +openmpi

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Re: problems doing MP upgrade: atlas

2013-04-18 Thread Marcelo Chiapparini
Many thanks to all people who enlightened me! I will wait and fill up a
tickect


2013/4/17 Ryan Schmidt ryandes...@macports.org


 On Apr 17, 2013, at 12:51, Marcelo Chiapparini wrote:

  I am running ML with MP 2.1.3 + Xcode 4.6.2. I am trying to upgrade the
 MP installation. When doing it I get the following error (the main.log file
 is too big to attach it here). Any advice please?

 Yup, it doesn't work right now; there are lots of tickets about this. Wait
 until it gets fixed.





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problems doing MP upgrade: atlas

2013-04-17 Thread Marcelo Chiapparini
Hello,

I am running ML with MP 2.1.3 + Xcode 4.6.2. I am trying to upgrade the MP
installation. When doing it I get the following error (the main.log file is
too big to attach it here). Any advice please? Thanks in advance, Marcelo


Nostromo3:~ Marcelo$ sudo port selfupdate
Password:
---  Updating MacPorts base sources using rsync
MacPorts base version 2.1.3 installed,
MacPorts base version 2.1.3 downloaded.
---  Updating the ports tree
---  MacPorts base is already the latest version

The ports tree has been updated. To upgrade your installed ports, you
should run
  port upgrade outdated
Nostromo3:~ Marcelo$ sudo port upgrade outdated
Password:
Portfile changed since last build; discarding previous state.
---  Computing dependencies for atlas
---  Fetching distfiles for atlas
---  Verifying checksum(s) for atlas
---  Extracting atlas
---  Applying patches to atlas
---  Configuring atlas
Selected C compiler: /opt/local/bin/clang-mp-3.3
Selected F77 compiler: gfortran45
---  Building atlas
Error: org.macports.build for port atlas returned: command execution failed
Please see the log file for port atlas for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
Error: Unable to upgrade port: 1
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets
=
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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
Ok, I will not install another X server. I'll try to fix things with the
default one provided by Apple... Thanks!


2013/2/19 Brandon Allbery allber...@gmail.com

 On Tue, Feb 19, 2013 at 11:43 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 as a matter of fact, I don't have installed Quartz, because I didn't need
 it with my other installed ports... I was using the X server from Apple
 without problems. Now, its seems it's time to change the X server in favor
 of Quartz. Thanks for the tip!


 No; if you have Apple's X server and it works then something else is wrong.

 DISPLAY should be being set by launchd; if you have any shell files
 setting it, they are broken.

 --
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 associates
 allber...@gmail.com
 ballb...@sinenomine.net
 unix, openafs, kerberos, infrastructure, xmonad
 http://sinenomine.net




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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
Hi! thanks for the update! After installing xclock, I get the same error
message as with Grace:

Nostromo3:~ Marcelo$ xclock
Error: Can't open display:
Nostromo3:~ Marcelo$

The saga continues... the problem seems to be with ~/.bash_profile file, I
think, because I don't have any one...


2013/2/19 Chris Jones jon...@hep.phy.cam.ac.uk

 Hi,

 Indeed, I should have included Apples own X11 application in my list as an
 option, my mistake.

 Basically, go to a terminal and echo the $DISPLAY

 Chris-Jones-Macbook-Pro ~  echo $DISPLAY
 /tmp/launch-l2fzGH/org.macosforge.xquartz:0

 if it doesn't look something like the above, then your X11 installation is
 screwed.

 Also note you should test your X11 with a minimal application first,
 before Grace. i.e. run

   xclock

 at the terminal and only once that works move on to grace…

 Chris

 On 19 Feb 2013, at 4:46pm, Brandon Allbery allber...@gmail.com wrote:

 On Tue, Feb 19, 2013 at 11:43 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 as a matter of fact, I don't have installed Quartz, because I didn't need
 it with my other installed ports... I was using the X server from Apple
 without problems. Now, its seems it's time to change the X server in favor
 of Quartz. Thanks for the tip!


 No; if you have Apple's X server and it works then something else is wrong.

 DISPLAY should be being set by launchd; if you have any shell files
 setting it, they are broken.

 --
 brandon s allbery kf8nh   sine nomine
 associates
 allber...@gmail.com
 ballb...@sinenomine.net
 unix, openafs, kerberos, infrastructure, xmonad
 http://sinenomine.net





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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
Hi Ryan,

I don't have any ~/.bash_profile file in my home directory, or other shell
setup file:

Nostromo3:~ Marcelo$ ls -all
total 64
drwxr-xr-x+ 26 Marcelo  staff884 20 Fev 10:55 .
drwxr-xr-x   5 root admin170 20 Fev 10:54 ..
-rw---   1 Marcelo  staff  4 18 Set 15:22 .CFUserTextEncoding
-rw-r--r--@  1 Marcelo  staff  15364 20 Fev 10:56 .DS_Store
drwx--   2 Marcelo  staff 68 20 Fev 10:55 .Trash
-rw---   1 Marcelo  staff   8151 20 Fev 10:56 .bash_history
drwxr-xr-x   3 Marcelo  staff102  8 Set 13:40 .config
drwx--   3 Marcelo  staff102 12 Set 09:58 .cups
drwx--  15 Marcelo  staff510 20 Fev 10:56 .dropbox
drwx--   9 Marcelo  staff306 17 Set 15:19 .filezilla
drwxr-xr-x   6 Marcelo  staff204  3 Out 15:56 .fontconfig
drwxr-xr-x  14 Marcelo  staff476  8 Set 11:25 .fonts
-rw-r--r--   1 Marcelo  staff241  9 Set 15:40 .profile
drwx--   3 Marcelo  staff102 17 Set 15:16 .putty
drwxr-xr-x   8 Marcelo  staff272  8 Nov 15:47 .qtoctave
drwx--   3 Marcelo  staff102 12 Set 12:40 .ssh
drwx--+ 13 Marcelo  staff442  8 Out 14:35 Desktop
drwx--+  6 Marcelo  staff204 27 Nov 18:28 Documents
drwx--+ 81 Marcelo  staff   2754 20 Fev 09:38 Downloads
drwx--@ 16 Marcelo  staff544 20 Fev 10:56 Dropbox
drwx--@ 16 Marcelo  staff544 20 Fev 10:56 Google Drive
drwx--@ 53 Marcelo  staff   1802 30 Nov 15:56 Library
drwx--+  4 Marcelo  staff136  8 Set 13:12 Movies
drwx--+  4 Marcelo  staff136  8 Set 19:53 Music
drwx--+  8 Marcelo  staff272  7 Jan 13:58 Pictures
drwxr-xr-x+  5 Marcelo  staff170  6 Set 18:01 Public

Perhaps I need one? if yes, I need a template... However, PATH is set
somewhere:
Nostromo3:~ Marcelo$ echo $PATH
/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin

so, should I look for the file where PATH is set?

Thanks again for the help

Marcelo




2013/2/19 Ryan Schmidt ryandes...@macports.org


 On Feb 19, 2013, at 08:44, Marcelo Chiapparini wrote:

  DISPLAY is not set...
 
  $ echo $DISPLAY
 
  $

 Ok, that's definitely a problem. As Chris said, the OS should have set it
 to the correct value for you already, as long as you are running OS X 10.5
 or later.

 Is there a line in any of your shell setup files (~/.profile,
 ~/.bash_profile, ~/.bash_rc, etc.) that is setting DISPLAY? If so, try
 removing those lines and letting the OS do it. You'll have to close and
 re-open your terminal window before the change will take effect.





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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
Yes it is! here is the content of .profile:

Nostromo3:~ Marcelo$ more .profile

# MacPorts Installer addition on 2012-09-09_at_15:40:26: adding an
appropriate PATH variable for use with MacPorts.
export PATH=/opt/local/bin:/opt/local/sbin:$PATH
# Finished adapting your PATH environment variable for use with MacPorts.

I've checked the paths file in etc, and it contains the rest of my PATH...

Thanks you!



2013/2/20 Brandon Allbery allber...@gmail.com

 On Wed, Feb 20, 2013 at 9:13 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hi Ryan,

 I don't have any ~/.bash_profile file in my home directory, or other
 shell setup file:

 (...)

 -rw-r--r--   1 Marcelo  staff241  9 Set 15:40 .profile


 That one is the non-bash-specific shell setup; check there.  You'll
 probably also find the PATH setup in it.

 --
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 associates
 allber...@gmail.com
 ballb...@sinenomine.net
 unix, openafs, kerberos, infrastructure, xmonad
 http://sinenomine.net




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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
Hi Brandon,

regarding the action of launchd at boot time, here is the content of my etc
directory:

Nostromo3:etc Marcelo$ ls
afpovertcp.cfg ftpusers nanorc protocols
aliases gettytab networks racoon
aliases.db group newsyslog.conf raddb
apache2 group~previous newsyslog.d rc.common
asl.conf hostconfig nfs.conf rc.imaging
authorization hosts notify.conf rc.netboot
auto_home hosts.equiv ntp-restrict.conf resolv.conf
auto_master ip6addrctl.conf ntp.conf rmtab
auto_master~orig irbrc ntp_opendirectory.conf rpc
autofs.conf kcpassword openldap rtadvd.conf
bashrc kern_loader.conf pam.d security
bind.keys krb5.keytab passwd services
com.apple.screensharing.agent.launchd localtime passwd~orig shells
csh.cshrc locate.rc paths snmp
csh.login mach_init.d paths.d ssh_config
csh.logout mach_init_per_login_session.d periodic sshd_config
cups mach_init_per_user.d pf.anchors sshd_config~orig
defaults mail.rc pf.conf sudoers
dnsextd.conf man.conf pf.os syslog.conf
efax.rc manpaths php-fpm.conf.default ttys
emond.d manpaths.d php.ini.default xtab
find.codes master.passwd php.ini.default-5.2-previous zshenv
fstab.hd master.passwd~orig postfix
ftpd.conf moduli ppp
ftpd.conf.default named.conf profile

As can be seen, no launchd.conf file does exist. The content of bashrc is:

Nostromo3:etc Marcelo$ more bashrc
# System-wide .bashrc file for interactive bash(1) shells.
if [ -z $PS1 ]; then
   return
fi

PS1='\h:\W \u\$ '
# Make bash check its window size after a process completes
shopt -s checkwinsize
# Tell the terminal about the working directory at each prompt.
if [ $TERM_PROGRAM == Apple_Terminal ]  [ -z $INSIDE_EMACS ]; then
update_terminal_cwd() {
# Identify the directory using a file: scheme URL,
# including the host name to disambiguate local vs.
# remote connections. Percent-escape spaces.
local SEARCH=' '
local REPLACE='%20'
local PWD_URL=file://$HOSTNAME${PWD//$SEARCH/$REPLACE}
printf '\e]7;%s\a' $PWD_URL
}
PROMPT_COMMAND=update_terminal_cwd; $PROMPT_COMMAND
fi

and there isn't any reference to DISPLAY.

I am running Mountain Lion. I think that Apple doesn't configure its
computers to run any X11 application straight from Macports, because the
necessary configuration files are absent. When my wife tried to run MathLab
in her MacAir, which needs X11, it failed to run. Installing Xquartz fixed
the problem. So, I think that the Xquartz installation fixed the issue with
the necessary configuration files... is was a configuration issue, not a
server one... What do you think?

Regards, Marcelo



2013/2/19 Brandon Allbery allber...@gmail.com

 On Tue, Feb 19, 2013 at 11:43 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 as a matter of fact, I don't have installed Quartz, because I didn't need
 it with my other installed ports... I was using the X server from Apple
 without problems. Now, its seems it's time to change the X server in favor
 of Quartz. Thanks for the tip!


 No; if you have Apple's X server and it works then something else is wrong.

 DISPLAY should be being set by launchd; if you have any shell files
 setting it, they are broken.

 --
 brandon s allbery kf8nh   sine nomine
 associates
 allber...@gmail.com
 ballb...@sinenomine.net
 unix, openafs, kerberos, infrastructure, xmonad
 http://sinenomine.net




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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
Bingo Lawrence!!! thank you very much for the help!!

regards, Marcelo


2013/2/20 Lawrence Velázquez lar...@macports.org

 On Feb 20, 2013, at 9:47 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

  I am running Mountain Lion.

 Mountain Lion does not have an X server. You'll have to install XQuartz or
 the xorg-server port, which are the same software.

 vq




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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
Complementing Lawrence information, just for the records:

http://support.apple.com/kb/HT5293

Marcelo


2013/2/20 Marcelo Chiapparini marcelo.chiappar...@gmail.com

 Bingo Lawrence!!! thank you very much for the help!!

 regards, Marcelo


 2013/2/20 Lawrence Velázquez lar...@macports.org

 On Feb 20, 2013, at 9:47 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

  I am running Mountain Lion.

 Mountain Lion does not have an X server. You'll have to install XQuartz
 or the xorg-server port, which are the same software.

 vq




 --
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Re: Grace: Can't open display

2013-02-20 Thread Marcelo Chiapparini
After installing Xquartz 2.7.4, Grace opens like a charm...

Thanks a lot to everyone who wrote about my problem!

Regards, Marcelo


2013/2/20 Brandon Allbery allber...@gmail.com

 On Wed, Feb 20, 2013 at 9:47 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 regarding the action of launchd at boot time, here is the content of my
 etc directory:


 Not relevant; the launchd configuration I was talking about is in
 /System/Library/LaunchDaemons and/or /Library/LaunchDaemons.

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Re: Grace: Can't open display

2013-02-19 Thread Marcelo Chiapparini
Hi Ryan,

DISPLAY is not set...

$ echo $DISPLAY

$

Regards,
Marcelo


2013/2/18 Ryan Schmidt ryandes...@macports.org


 On Feb 18, 2013, at 12:41, Marcelo Chiapparini wrote:

  Unfortunately, I don't have more details.

 What is your DISPLAY environment variable set to?




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Re: Grace: Can't open display

2013-02-19 Thread Marcelo Chiapparini
Hi Chris,

as a matter of fact, I don't have installed Quartz, because I didn't need
it with my other installed ports... I was using the X server from Apple
without problems. Now, its seems it's time to change the X server in favor
of Quartz. Thanks for the tip!

regards

Marcelo


2013/2/19 Chris Jones jon...@hep.phy.cam.ac.uk


 Sounds like you haven't installed a X server. Check out XQuartz, or the
 one from MacPorts itself.

 Chris


 On 19/02/13 14:44, Marcelo Chiapparini wrote:

 Hi Ryan,

 DISPLAY is not set...

 $ echo $DISPLAY

 $

 Regards,
 Marcelo


 2013/2/18 Ryan Schmidt ryandes...@macports.org
 mailto:ryandesign@macports.**org ryandes...@macports.org



 On Feb 18, 2013, at 12:41, Marcelo Chiapparini wrote:

   Unfortunately, I don't have more details.

 What is your DISPLAY environment variable set to?




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Grace: Can't open display

2013-02-18 Thread Marcelo Chiapparini
Hello!

After installing Grace, I get the following error when I tried to run it:

$ xmgrace
Can't open display
Failed initializing GUI, exiting

What could be going wrong? Thanks in advance for the help

Regards,

Marcelo
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Re: Grace: Can't open display

2013-02-18 Thread Marcelo Chiapparini
Hi Brandon,

thank you very much for your reply. Unfortunately, I don't have more
details. The reported three lines are all the error output from Grace... I
will see your suggestion regarding the $DISPLAY...

regards, Marcelo


2013/2/18 Brandon Allbery allber...@gmail.com

 On Mon, Feb 18, 2013 at 1:26 PM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 $ xmgrace
 Can't open display
 Failed initializing GUI, exiting

 What could be going wrong? Thanks in advance for the help


 At a guess, your dotfiles set $DISPLAY instead of letting launchd do so.
  More detail would be helpful; otherwise, vague guesses are the best anyone
 here can do.

 --
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gcc45 and gfortran issue

2012-05-01 Thread Marcelo Chiapparini
Hello,

I am running macports 2.04. I've installed gcc45:

$ port installed gcc45
The following ports are currently installed:
  gcc45 @4.5.3_3 (active)

but I am unable to run gfortran:

$ gfortran
-bash: gfortran: command not found

What do I need in order to activate gfortran? Thanks in advance,

Marcelo
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Re: gcc45 and gfortran issue

2012-05-01 Thread Marcelo Chiapparini
Thanks a lot Jason, it worked!

Regards,
Marcelo
2012/5/1 Jason Swails jason.swa...@gmail.com

 You should install gcc_select and make sure you set the proper compiler
 suite:

 sudo port install gcc_select
 sudo port select gcc mp-gcc45

 That should set up the symlinks so that 'gfortran' in /opt/local/bin links
 to gfortran-mp-4.5

 HTH,
 Jason

 On Tue, May 1, 2012 at 7:17 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hello,

 I am running macports 2.04. I've installed gcc45:

 $ port installed gcc45
 The following ports are currently installed:
   gcc45 @4.5.3_3 (active)

 but I am unable to run gfortran:

 $ gfortran
 -bash: gfortran: command not found

 What do I need in order to activate gfortran? Thanks in advance,

 Marcelo


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 352-392-4032




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Re: gcc45 and gfortran issue

2012-05-01 Thread Marcelo Chiapparini
2012/5/1 Ryan Schmidt ryandes...@macports.org


 On May 1, 2012, at 06:23, Jason Swails wrote:

  You should install gcc_select and make sure you set the proper compiler
 suite:
 
  sudo port install gcc_select
  sudo port select gcc mp-gcc45
 
  That should set up the symlinks so that 'gfortran' in /opt/local/bin
 links to gfortran-mp-4.5

 Or you can use port contents gcc45 to see what the port installed, see
 from the output that it provides gfortran-mp-4.5, not gfortran, and
 then call the compiler using gfortran-mp-4.5. port contents is what you
 should use anytime you have the question I installed a port but the file I
 thought it would provide still doesn't exist.



Thanks for the tip Ryan!

Marcelo
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Re: error message: Couldn't determine your Xcode version

2012-04-29 Thread Marcelo Chiapparini
2012/4/29 Jeremy Lavergne jer...@lavergne.gotdns.org

  Hi Jeremy, thanks for the reply. Here is the result of the command:
 
  marcelo$ sudo xcodebuild -version
  Password:
  error: can't exec '/Applications/Xcode.app/usr/bin/xcodebuild' (No such
 file or directory)
 
  May be a problem with a path?

 Yes, looks like Xcode has its path wrong.

 See what it is, just in case:
 sudo xcode-select -print-path

 Then switch it to the expected one again:
 sudo xcode-select -switch /Applications/Xcode.app/Contents/Developer


Before implementing your advice:

Yggdrasill3:~ marcelo$ sudo xcode-select -print-path
Password:
/Applications/Xcode.app

After your advice:

Yggdrasill3:~ marcelo$ sudo xcode-select -switch
/Applications/Xcode.app/Contents/Developer
Yggdrasill3:~ marcelo$ sudo xcodebuild -version
Xcode 4.3.2
Build version 4E2002

Now port is running fine. The problem was fixed! Thanks a lot t Jeremy

Regards,

Marcelo
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Re: xcode issue in Lion?

2011-07-22 Thread Marcelo Chiapparini
It worked! thanks!

2011/7/21 René Fournier m...@renefournier.com

 You need to also kill iTunes Helper. Open Activity Monitor, you'll see it
 there. Once it's gone, the Installation will continue.

 On 2011-07-21, at 7:04 PM, Jeremy Huddleston wrote:

  What's the output of 'ps aux | grep iTunes' when in that state?
 
  On Jul 21, 2011, at 13:56, Mojca Miklavec wrote:
 
  On Thu, Jul 21, 2011 at 22:53, Marcelo Chiapparini wrote:
  Hello,
  When trying to install Xcode in Lion, the installation freezes asking
 to
  close iTunes, even if not running. The problem arises with Xcode 4.1
 and
  3.2.6... No Xcode no MacPorts... any suggestion?
 
  Kill the window asking for closing iTunes with Activity Monitor.
 
  Mojca
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Re: problem with mp-gcc after upgrading to Lion

2011-07-22 Thread Marcelo Chiapparini
Just for the records: after upgrading to Xcode4.1 in Lion, I am able to
compile with mp-gcc45 again.

2011/7/21 Dominik Reichardt domi...@gmail.com



 Am 21.07.2011 um 18:23 schrieb Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com:



 2011/7/21 Jeremy Huddleston  jerem...@macports.orgjerem...@macports.org
 


 On Jul 21, 2011, at 9:10 AM, Marcelo Chiapparini wrote:

  2011/7/21 Jeremy Huddleston  jerem...@macports.org
 jerem...@macports.org
 
 
  On Jul 21, 2011, at 8:53 AM, Marcelo Chiapparini wrote:
 
  Like you, I am wondering about installing XCode 4.1... but is it
  necessary?
  I need Xcode only to run macports...
 
  Yes.  You need XCode to build MacPorts or to run other dev tools built
 in
  MacPorts (such as compilers which exec part of devtools as you just
 pointed
  out).
 
 
  I already have XCode 3.2.6 installed, which I was using with Snow
 Leopard
  and macports. The questions is if I need to upgrade to XCode 4.1 in
 order to
  run macports in Lion.

 XCode 3.2.6 is for Snow Leopard.  It won't work on Lion.  As you pointed
 out earlier, it was (correctly) removed from your system during the upgrade.
  XCode 4.1 are the development tools for Lion.


 XCode 3.2.6 is still in the applications folder:

 $ ls
 Audio Instruments.app Quartz Composer.app
 Dashcode.app Interface Builder.app Utilities
 Graphics Tools Performance Tools *Xcode.app*

 but I will follow your advice, and upgrade to XCode 4.1. Thank you!



 When MacPorts says it needs Xcode it means the whole Xcode package,
 ESPECIALLY the unix development tools. I'm not sure whether MacPorts ever
 uses the Xcode application.

 Dom




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problem with mp-gcc after upgrading to Lion

2011-07-21 Thread Marcelo Chiapparini
Hello,

I have been working in a Mac with Snow Leopar, mp-gcc45, and Xcode 3.2.6.
Now, I've just upgraded to Lion, and when I try to compile with mp-gcc45, I
get the message:

gfortran: error trying to exec 'as': execvp: No such file or directory

I wonder what is going wrong. Xcode is installed, v.2.6.2. (I checked it out
in the Developer folder)

Here follows the output of port select gcc:

$ port select gcc
Warning: port definitions are more than two weeks old, consider using
selfupdate
Available versions for gcc:
 gcc40
gcc42
llvm-gcc42
 mp-gcc45 (active)
none

Thanks in advance

Marcelo


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Re: problem with mp-gcc after upgrading to Lion

2011-07-21 Thread Marcelo Chiapparini
2011/7/21 Brandon Allbery allber...@gmail.com

 On Thu, Jul 21, 2011 at 11:33, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 I have been working in a Mac with Snow Leopar, mp-gcc45, and Xcode 3.2.6.
 Now, I've just upgraded to Lion, and when I try to compile with mp-gcc45, I
 get the message:

 gfortran: error trying to exec 'as': execvp: No such file or directory


 Open a terminal and see what type as returns.  (which as in tcsh.)
  That said, if you upgraded to Lion, don't you also have to upgrade to XCode
 4.1?

 --
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 wandering unix systems administrator (available) (412) 475-9364 vm/sms


Hi, thanks for the reply:

$ type as
-bash: type: as: not found

Like you, I am wondering about installing XCode 4.1... but is it necessary?
I need Xcode only to run macports...

Thanks!


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Re: problem with mp-gcc after upgrading to Lion

2011-07-21 Thread Marcelo Chiapparini
2011/7/21 Jeremy Huddleston jerem...@macports.org


 On Jul 21, 2011, at 8:53 AM, Marcelo Chiapparini wrote:

  Like you, I am wondering about installing XCode 4.1... but is it
 necessary?
  I need Xcode only to run macports...

 Yes.  You need XCode to build MacPorts or to run other dev tools built in
 MacPorts (such as compilers which exec part of devtools as you just pointed
 out).


I already have XCode 3.2.6 installed, which I was using with Snow Leopard
and macports. The questions is if I need to upgrade to XCode 4.1 in order to
run macports in Lion.

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Re: problem with mp-gcc after upgrading to Lion

2011-07-21 Thread Marcelo Chiapparini
2011/7/21 Jeremy Huddleston jerem...@macports.org


 On Jul 21, 2011, at 9:10 AM, Marcelo Chiapparini wrote:

  2011/7/21 Jeremy Huddleston jerem...@macports.org
 
 
  On Jul 21, 2011, at 8:53 AM, Marcelo Chiapparini wrote:
 
  Like you, I am wondering about installing XCode 4.1... but is it
  necessary?
  I need Xcode only to run macports...
 
  Yes.  You need XCode to build MacPorts or to run other dev tools built
 in
  MacPorts (such as compilers which exec part of devtools as you just
 pointed
  out).
 
 
  I already have XCode 3.2.6 installed, which I was using with Snow Leopard
  and macports. The questions is if I need to upgrade to XCode 4.1 in order
 to
  run macports in Lion.

 XCode 3.2.6 is for Snow Leopard.  It won't work on Lion.  As you pointed
 out earlier, it was (correctly) removed from your system during the upgrade.
  XCode 4.1 are the development tools for Lion.


XCode 3.2.6 is still in the applications folder:

$ ls
Audio Instruments.app Quartz Composer.app
Dashcode.app Interface Builder.app Utilities
Graphics Tools Performance Tools *Xcode.app*

but I will follow your advice, and upgrade to XCode 4.1. Thank you!


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xcode issue in Lion?

2011-07-21 Thread Marcelo Chiapparini
Hello,

When trying to install Xcode in Lion, the installation freezes asking to
close iTunes, even if not running. The problem arises with Xcode 4.1 and
3.2.6... No Xcode no MacPorts... any suggestion?

Marcelo

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port not running

2011-06-24 Thread Marcelo Chiapparini
Hi!

I've just installed macports on a mac with OSX 10.6.7. After installing
gcc_select, I can't run it:

Yggdrasill3:~ marcelo$ port installed
The following ports are currently installed:
  gcc_select @0.1_5 (active)
Yggdrasill3:~ marcelo$ gcc_select -l
-bash: gcc_select: command not found

What could be the problem? Thanks in advance for the help,

Regards

Marcelo

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Re: gcc_select does not exist (was: Re: port not running)

2011-06-24 Thread Marcelo Chiapparini
Thank you! So, if I understood correctly, all the *_select scripts are gone
forever in favor of port select. Thanks again!

2011/6/24 Ryan Schmidt ryandes...@macports.org


 On Jun 24, 2011, at 15:06, Marcelo Chiapparini wrote:

  I've just installed macports on a mac with OSX 10.6.7. After installing
 gcc_select, I can't run it:
 
  Yggdrasill3:~ marcelo$ port installed
  The following ports are currently installed:
gcc_select @0.1_5 (active)
  Yggdrasill3:~ marcelo$ gcc_select -l
  -bash: gcc_select: command not found
 
  What could be the problem? Thanks in advance for the help,

 This is expected behavior now. Please read:

 https://trac.macports.org/ticket/29531






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Re: Thanking the MacPorts team

2011-01-20 Thread Marcelo Chiapparini
When I moved from Linux to Mac (at home at least), I was quite lost
regarding a repository disponibilizing software for Mac in a consistent way,
like the one existing for the Linux distributions. Then I discovered
the MacPorts Project. It is a wonderful project, plenty of great work. Now I
am productive under Mac due to MacPorts. Thanks a lot guys!




2011/1/18 kevin beckford chig...@lazyweb.ca

  Me too. Great team and great support.

 +1  I've been using macports forever it seems, and I'll gladly take
 this opportunity to express my thanks at the hard work that goes into
 this project!
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Re: FORTRAN for Snow Leopard?

2011-01-09 Thread Marcelo Chiapparini
Hi!

after installing gcc_select, and before installing any gcc form macports, I
ran it and got the following output:

$ gcc_select -l
Available versions:
gcc40 gcc42 llvm-gcc42

My guess is that gcc40 came installed with Snow Leopard by default, and
gcc42 was installed by the latest version of Xcode I installed to run
macports. Now I will install gcc45 or gcc46+gfrotan in order to run frotran.
My question is the following: each time I need to install a port from
macports, where Xcode is used, I should switch gcc to gcc42, the one
installed with Xcode?

thanks in advance

Marcelo




2011/1/7 Jason Swails jason.swa...@gmail.com

 Hello,

 I use Fortran extensively on my Mac for my work (scientific computing --
 all applications are written in Fortran).  I have tried both of the methods
 that you have below, but I've had problems with all of them.  The problem
 with installing just gfortran through binaries is that they're typically
 incompatible with the Xcode GCC compiler (they're different versions of
 GCC), so it's far more difficult to link C- and Fortran- object files.  If
 you do find one that's compatible with the Xcode GCC, then that means you're
 using GCC 4.2, which is quite old. gfortran from that era is not yet stable
 and reliable, especially for legacy F77.

 IMO, the best approach is actually provided by MacPorts.  Just install an
 updated GCC with the +gfortran variant.

 sudo port -v install gcc45 +gfortran (this may take a little while)

 Then you can install gcc_select to help manage different versions of the
 GCC compiler (i.e. the xcode version and the MacPorts version, or multiple
 MacPorts versions if you install gcc44, gcc43, gcc46, etc.)

 sudo port -v install gcc_select (this should be fast)

 To use gcc_select, do the following

 gcc_select -l (lists all of the available versions)
 sudo gcc_select mp-gcc45 (selects the GCC 4.5 installed with MacPorts)

 Hope this helps,
 Jason

 On Fri, Jan 7, 2011 at 8:49 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hi!

 I need to run FORTRAN in my iMac with OSX 10.6 installed. I've done some
 research, but the results are not conclusive:

 http://www.webmo.net/support/fortran_osx.html
 http://hpc.sourceforge.net/
 http://gcc.gnu.org/wiki/GFortranBinaries
 http://r.research.att.com/tools/

 I am not sure which method is the most convenient: to installing the
 FORTRAN binaries for Leopard or to installing the gfortran extension for
 Xcode... So, I would like very much to know about experiences from people
 already running FORTRAN in a Mac (if any!). Thanks a lot in advance for the
 help!

 Regards

 Marcelo



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 352-392-4032




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Re: FORTRAN for Snow Leopard?

2011-01-09 Thread Marcelo Chiapparini
Thank you a lot once more for the advice!!!

Marcelo


2011/1/9 Jason Swails jason.swa...@gmail.com



 On Sun, Jan 9, 2011 at 2:00 PM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hi!

 after installing gcc_select, and before installing any gcc form macports,
 I ran it and got the following output:

 $ gcc_select -l
 Available versions:
 gcc40 gcc42 llvm-gcc42

 My guess is that gcc40 came installed with Snow Leopard by default, and
 gcc42 was installed by the latest version of Xcode I installed to run
 macports. Now I will install gcc45 or gcc46+gfrotan in order to run frotran.
 My question is the following: each time I need to install a port from
 macports, where Xcode is used, I should switch gcc to gcc42, the one
 installed with Xcode?


 The ports *should* automatically use /usr/bin/gcc-4.2 to avoid this issue
 altogether, and in my experience this is almost always the case.  The
 notable exception for me has been with git-core.  In my opinion, you should
 switch back to gcc42 if you can remember (all it does is shuffle around
 symlinks, so it's cheap and easy), but it'll probably be fine if you don't.

 One other comment -- if you're using gcc46 +gfortran, take care to spell
 gfortran correctly, since port will not complain about misspellings and
 silently ignore it.

 Good luck!
 Jason



 thanks in advance

 Marcelo




 2011/1/7 Jason Swails jason.swa...@gmail.com

 Hello,


 I use Fortran extensively on my Mac for my work (scientific computing --
 all applications are written in Fortran).  I have tried both of the methods
 that you have below, but I've had problems with all of them.  The problem
 with installing just gfortran through binaries is that they're typically
 incompatible with the Xcode GCC compiler (they're different versions of
 GCC), so it's far more difficult to link C- and Fortran- object files.  If
 you do find one that's compatible with the Xcode GCC, then that means you're
 using GCC 4.2, which is quite old. gfortran from that era is not yet stable
 and reliable, especially for legacy F77.

 IMO, the best approach is actually provided by MacPorts.  Just install an
 updated GCC with the +gfortran variant.

 sudo port -v install gcc45 +gfortran (this may take a little while)

 Then you can install gcc_select to help manage different versions of the
 GCC compiler (i.e. the xcode version and the MacPorts version, or multiple
 MacPorts versions if you install gcc44, gcc43, gcc46, etc.)

 sudo port -v install gcc_select (this should be fast)

 To use gcc_select, do the following

 gcc_select -l (lists all of the available versions)
 sudo gcc_select mp-gcc45 (selects the GCC 4.5 installed with MacPorts)

 Hope this helps,
 Jason

 On Fri, Jan 7, 2011 at 8:49 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hi!

 I need to run FORTRAN in my iMac with OSX 10.6 installed. I've done some
 research, but the results are not conclusive:

 http://www.webmo.net/support/fortran_osx.html
 http://hpc.sourceforge.net/
 http://gcc.gnu.org/wiki/GFortranBinaries
 http://r.research.att.com/tools/

 I am not sure which method is the most convenient: to installing the
 FORTRAN binaries for Leopard or to installing the gfortran extension for
 Xcode... So, I would like very much to know about experiences from people
 already running FORTRAN in a Mac (if any!). Thanks a lot in advance for the
 help!

 Regards

 Marcelo



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 352-392-4032




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Re: Problems with gnuplot from marcports

2011-01-07 Thread Marcelo Chiapparini
Hi! I forgot that man is our friend, sorry for that... and thanks a lot
for all the information regarding the open command. This is an amazing list!

2011/1/7 Andrea D'Amore and.dam...@macports.org

 On Fri, Jan 7, 2011 at 3:58 AM, Ryan Schmidt ryandes...@macports.org
 wrote:

  open -e file is the same as dragging the file file onto the program
 TextEdit

 I have a tedit alias for open -e in order to do quick GUI text
 editing and to differentiate it from Bare Bones Software's edit.

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FORTRAN for Snow Leopard?

2011-01-07 Thread Marcelo Chiapparini
Hi!

I need to run FORTRAN in my iMac with OSX 10.6 installed. I've done some
research, but the results are not conclusive:

http://www.webmo.net/support/fortran_osx.html
http://hpc.sourceforge.net/
http://gcc.gnu.org/wiki/GFortranBinaries
http://r.research.att.com/tools/

I am not sure which method is the most convenient: to installing the FORTRAN
binaries for Leopard or to installing the gfortran extension for Xcode...
So, I would like very much to know about experiences from people already
running FORTRAN in a Mac (if any!). Thanks a lot in advance for the help!

Regards

Marcelo
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Re: FORTRAN for Snow Leopard?

2011-01-07 Thread Marcelo Chiapparini
Thank you so much!

2011/1/7 Jason Swails jason.swa...@gmail.com

 Hello,

 I use Fortran extensively on my Mac for my work (scientific computing --
 all applications are written in Fortran).  I have tried both of the methods
 that you have below, but I've had problems with all of them.  The problem
 with installing just gfortran through binaries is that they're typically
 incompatible with the Xcode GCC compiler (they're different versions of
 GCC), so it's far more difficult to link C- and Fortran- object files.  If
 you do find one that's compatible with the Xcode GCC, then that means you're
 using GCC 4.2, which is quite old. gfortran from that era is not yet stable
 and reliable, especially for legacy F77.

 IMO, the best approach is actually provided by MacPorts.  Just install an
 updated GCC with the +gfortran variant.

 sudo port -v install gcc45 +gfortran (this may take a little while)

 Then you can install gcc_select to help manage different versions of the
 GCC compiler (i.e. the xcode version and the MacPorts version, or multiple
 MacPorts versions if you install gcc44, gcc43, gcc46, etc.)

 sudo port -v install gcc_select (this should be fast)

 To use gcc_select, do the following

 gcc_select -l (lists all of the available versions)
 sudo gcc_select mp-gcc45 (selects the GCC 4.5 installed with MacPorts)

 Hope this helps,
 Jason

 On Fri, Jan 7, 2011 at 8:49 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hi!

 I need to run FORTRAN in my iMac with OSX 10.6 installed. I've done some
 research, but the results are not conclusive:

 http://www.webmo.net/support/fortran_osx.html
 http://hpc.sourceforge.net/
 http://gcc.gnu.org/wiki/GFortranBinaries
 http://r.research.att.com/tools/

 I am not sure which method is the most convenient: to installing the
 FORTRAN binaries for Leopard or to installing the gfortran extension for
 Xcode... So, I would like very much to know about experiences from people
 already running FORTRAN in a Mac (if any!). Thanks a lot in advance for the
 help!

 Regards

 Marcelo



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 University of Florida
 Ph.D. Graduate Student
 352-392-4032




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Re: Problems with gnuplot from marcports

2011-01-06 Thread Marcelo Chiapparini
Hi all! I've just turned off the hide extension feature in Finder. Thanks
to all of you for the help. After years of working with Linux, this is my
first time with a Mac... and I am loving. BTW, what is the  'open utility
Apple added to BSD'? can you point me to some information? Thanks!

2011/1/6 Jason Swails jason.swa...@gmail.com

 Or you can just live in the terminal :).  I find it faster than navigating
 Finder, and the open utility Apple added to BSD is quite handy.


 On Wed, Jan 5, 2011 at 9:45 PM, Ryan Schmidt ryandes...@macports.orgwrote:


 On Jan 5, 2011, at 11:22, Marcelo Chiapparini wrote:

  TextEdit added an txt extension to the file, so, the file
 qhdmmint.gplt was saved as qhdmmint.gplt.txt in the disk. This was why
 gnuplot didn't find it! Now, erasing the txt and moving qhdmmint.gplt.txt
 to qhdmmint.gplt I got my graph normally. The weird thing is that
 qhdmmint.gplt.txt appeared without the txtextension in Finder, that was
 why I was confused with the names...

 Yes, the Finder hides filename extensions by default. One of the first
 things I do on my Macs is disable that feature. It may help Grandma be less
 scared of her computer, but it does not help people who know how computers
 work. To disable this feature, choose Preferences from the Finder menu in
 the menubar, click Advanced, and check the checkbox Show all filename
 extensions.





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 352-392-4032

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Re: Problems with gnuplot from marcports

2011-01-05 Thread Marcelo Chiapparini
Hi Jean-Francois, thanks for the reply,

using the full path the error message is the same:

Yggdrasill2:cbpf marcelo$ gnuplot

G N U P L O T
 Version 4.4 patchlevel 2
last modified Wed Sep 22 12:10:34 PDT 2010
System: Darwin 10.5.0

Copyright (C) 1986-1993, 1998, 2004, 2007-2010
Thomas Williams, Colin Kelley and many others

gnuplot home: http://www.gnuplot.info
faq, bugs, etc:   type help seeking-assistance
 immediate help:   type help
plot window:  hit 'h'

Terminal type set to 'aqua'
gnuplot load
/Users/marcelo/Dropbox/trabalho/pesquisa/materia-nuclear/t-finita/cbpf/qhdmmint.gplt

   ^
 Cannot open load file
'/Users/marcelo/Dropbox/trabalho/pesquisa/materia-nuclear/t-finita/cbpf/qhdmmint.gplt'
 util.c: No such file or directory


May be a environmental variable issue, I don't know...

Thanks

Marcelo




2011/1/5 Jean-Francois Gobin j...@gobinjf.be

 Marcelo,

 Could you try loading the script using the full path?

 Thanks,
 J.


 On Wed, Jan 5, 2011 at 11:41 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hello,

 I've just bought a new iMac, running OS X 10.6. I am using it at home. In
 order to maintain compatibility with files created at work, under Linux, I
 want to install gnuplot on my Imac. So, I am using MacPorts, which I've
 found a very helpful and clever project (thank you guys!).

 So, I followed the instructions from the MacPorts site, and installed
 macports, xcode (the latest version available) and gnuplot. Everything went
 fine. Gnuplot works well from the command line. The problems appears when I
 try to load and script. When I call gnuplot from the directory of the
 scritp, I get the following:

 Yggdrasill2:cbpf marcelo$ gnuplot

 G N U P L O T
 Version 4.4 patchlevel 2
  last modified Wed Sep 22 12:10:34 PDT 2010
 System: Darwin 10.5.0

  Copyright (C) 1986-1993, 1998, 2004, 2007-2010
 Thomas Williams, Colin Kelley and many others

 gnuplot home: http://www.gnuplot.info
 faq, bugs, etc:   type help seeking-assistance
  immediate help:   type help
 plot window:  hit 'h'

 Terminal type set to 'aqua'

 gnuplot load qhdmmint.gplt
  ^
  Cannot open load file 'qhdmmint.gplt'
  util.c: No such file or directory


 The file qhdmmint.gplt is in the directory from which I called gnuplot, so
 I don't understand the error... I've googled the internet, with no success.
 Any help will be very welcome,

 Regards

 Marcelo


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Re: Problems with gnuplot from marcports

2011-01-05 Thread Marcelo Chiapparini
Hello,

I've just solved the problem with the file not found. The file was edited
with TextEdit in plain text mode. TextEdit added an txt extension to the
file, so, the file qhdmmint.gplt was saved as qhdmmint.gplt.txt in the disk.
This was why gnuplot didn't find it! Now, erasing the txt and moving
qhdmmint.gplt.txt to qhdmmint.gplt I got my graph normally. The weird thing
is that qhdmmint.gplt.txt appeared without the txtextension in Finder,
that was why I was confused with the names...

Thanks a lot for all the responsive feedback

Regards

Marcelo



2011/1/5 Jason Swails jason.swa...@gmail.com

 Does it work if you just specify the script with gnuplot on the CL?

 gnuplot qhdmmint.gplt

 The nice thing about the aqua terminal is that the window should stick
 around.

 Good luck,
 Jason


 On Wed, Jan 5, 2011 at 10:05 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hi Jean-Francois, thanks for the reply,

 using the full path the error message is the same:

 Yggdrasill2:cbpf marcelo$ gnuplot

 G N U P L O T
  Version 4.4 patchlevel 2
 last modified Wed Sep 22 12:10:34 PDT 2010
 System: Darwin 10.5.0

 Copyright (C) 1986-1993, 1998, 2004, 2007-2010
 Thomas Williams, Colin Kelley and many others

 gnuplot home: http://www.gnuplot.info
 faq, bugs, etc:   type help seeking-assistance
  immediate help:   type help
 plot window:  hit 'h'

 Terminal type set to 'aqua'
 gnuplot load
 /Users/marcelo/Dropbox/trabalho/pesquisa/materia-nuclear/t-finita/cbpf/qhdmmint.gplt

  ^
  Cannot open load file
 '/Users/marcelo/Dropbox/trabalho/pesquisa/materia-nuclear/t-finita/cbpf/qhdmmint.gplt'
  util.c: No such file or directory


 May be a environmental variable issue, I don't know...

 Thanks

 Marcelo




 2011/1/5 Jean-Francois Gobin j...@gobinjf.be

 Marcelo,

 Could you try loading the script using the full path?

 Thanks,
 J.


 On Wed, Jan 5, 2011 at 11:41 AM, Marcelo Chiapparini 
 marcelo.chiappar...@gmail.com wrote:

 Hello,

 I've just bought a new iMac, running OS X 10.6. I am using it at home.
 In order to maintain compatibility with files created at work, under Linux,
 I want to install gnuplot on my Imac. So, I am using MacPorts, which I've
 found a very helpful and clever project (thank you guys!).

 So, I followed the instructions from the MacPorts site, and installed
 macports, xcode (the latest version available) and gnuplot. Everything went
 fine. Gnuplot works well from the command line. The problems appears when I
 try to load and script. When I call gnuplot from the directory of the
 scritp, I get the following:

 Yggdrasill2:cbpf marcelo$ gnuplot

 G N U P L O T
 Version 4.4 patchlevel 2
  last modified Wed Sep 22 12:10:34 PDT 2010
 System: Darwin 10.5.0

  Copyright (C) 1986-1993, 1998, 2004, 2007-2010
 Thomas Williams, Colin Kelley and many others

 gnuplot home: http://www.gnuplot.info
 faq, bugs, etc:   type help seeking-assistance
  immediate help:   type help
 plot window:  hit 'h'

 Terminal type set to 'aqua'

 gnuplot load qhdmmint.gplt
  ^
  Cannot open load file 'qhdmmint.gplt'
  util.c: No such file or directory


 The file qhdmmint.gplt is in the directory from which I called gnuplot,
 so I don't understand the error... I've googled the internet, with no
 success. Any help will be very welcome,

 Regards

 Marcelo


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 --
 Jason M. Swails
 Quantum Theory Project,
 University of Florida
 Ph.D. Graduate Student
 352-392-4032




-- 
Marcelo Chiapparini
http://sites.google.com/site/marcelochiapparini
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