[Matplotlib-users] cygwin compile?

2010-08-10 Thread Adam Gustafson
Has anyone been able to successfully compile matplotlib in Cygwin?  I would
imagine so, so if you've been able to do it, please help!  Not quite sure
why I'm having so much trouble, but the errors from the build step are
below.

I think perhaps the python lists are empty (can't figure out what version of
the libraries I have).  Could someone please instruct me as to how to fix
this?  It'd be much appreciated.  Thanks.


$ python setup.py build
basedirlist is: ['/usr/local', '/usr']

BUILDING MATPLOTLIB
matplotlib: 1.0.0
python: 2.6.5 (r265:79063, Jun 12 2010, 17:07:01)  [GCC
4.3.4 20090804 (release) 1]
  platform: cygwin

REQUIRED DEPENDENCIES
 numpy: 1.4.1
 freetype2: found, but unknown version (no pkg-config)
* WARNING: Could not find 'freetype2' headers in any
* of '/usr/include', '.', '/usr/include/freetype2',
* './freetype2'.

OPTIONAL BACKEND DEPENDENCIES
libpng: found, but unknown version (no pkg-config)
* Could not find 'libpng' headers in any of
* '/usr/include', '.'
Traceback (most recent call last):
  File setup.py, line 162, in module
if check_for_tk() or (options['build_tkagg'] is True):
  File /home/Adam/matplotlib-1.0.0/setupext.py, line 816, in check_for_tk
explanation = add_tk_flags(module)
  File /home/Adam/matplotlib-1.0.0/setupext.py, line 1080, in add_tk_flags
result = parse_tcl_config(tcl_lib_dir, tk_lib_dir)
  File /home/Adam/matplotlib-1.0.0/setupext.py, line 938, in
parse_tcl_config
tk_lib = tk_vars.get(default, TK_LIB_SPEC)[1:-1].split()[0][2:]
IndexError: list index out of range
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[Matplotlib-users] Fatal Python Error with 64 bit versions

2010-08-10 Thread stetrick

I am now getting a message that says:

Fatal Python error: PyEval_RestoreThread: NULL tstate

This application has requested the Runtime to terminate it in an unusual
way.

This is with matplotlib 1.0.0, but all versions are 64-bit (python, numpy,
matplotlib).

Is this something I can fix or ignore?

Thanks!
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[Matplotlib-users] matplotlib v1.0.0 for mac: installation problem

2010-08-10 Thread Antonino Cucchiara
Hello,
I am running a MacOS Snow leopard and I recently istalled the python 2.6 
via Enthought.
I wanted to upgrade the matplotlib 1.0 but when I run the .mpkg the 
installation don't start because
it seems not recognizing the python 2.6 is installed (I do have now 2.6.6).

Any suggestions?

Thanks,
Nino

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Postdoctoral Scholar
Lawrence Berkeley National Lab
UC Berkeley
website: www.astro.psu.edu/~cucchiara/


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Re: [Matplotlib-users] missing label in colorbar

2010-08-10 Thread Oz Nahum
Hi Everyone,
I solved the issue using the following code:

CS=ax1.pcolormesh(x,y,dolomites,vmin=0, vmax=max(dolomite),cmap=cm.jet_r)
fig.colorbar(CS,ticks=[0,max(dolomite)],orientation='horizontal',aspect=40,format='%.1E')

ax1.set_title(dolomite [phi])


It's not straight forward to understand, I hope my question will be a good
answer for others...

Cheers,

-- 
Oz Nahum
Graduate Student
Zentrum für Angewandte Geologie
Universität Tübingen

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it isn't hard to do
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Re: [Matplotlib-users] Fatal Python Error with 64 bit versions

2010-08-10 Thread Christoph Gohlke


On 8/9/2010 3:09 PM, stetrick wrote:

 I am now getting a message that says:

 Fatal Python error: PyEval_RestoreThread: NULL tstate

 This application has requested the Runtime to terminate it in an unusual
 way.

 This is with matplotlib 1.0.0, but all versions are 64-bit (python, numpy,
 matplotlib).

 Is this something I can fix or ignore?

 Thanks!

Which version of numpy are you using? Assuming you are talking about 
matplotlib-1.0.0.win-amd64-py2.6.exe, you need 
numpy-1.4.1.win-amd64-py2.6.exe.

Christoph

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[Matplotlib-users] mpl_toolkits

2010-08-10 Thread c.jeang
Hello,

  where can I find mpl_toolkits.
  Because I install matplotlib with ipython and the command
  yum install python-matplotlib
  but as a result I have no axes3d.py file and when I tried the examples of
  the matplotlib site I get the following message:
  unknown projection 3d
Apparently the toolkits mpl3d  is missing, which site can provide it?

  Best regards

  Jeanguillaume


-- 
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   CHU Larrey
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   email: jeanguilla...@ieee.org
   Tel: 33 (0)2 41 35 34 12
   Fax: 33 (0)2 41 35 48 80

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   des Syst�es Automatis� (CNRS FRE)




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Re: [Matplotlib-users] mpl_toolkits

2010-08-10 Thread Benjamin Root
On Tue, Aug 10, 2010 at 12:15 PM, c.jeang 
christian.jeanguilla...@univ-angers.fr wrote:

 Hello,

  where can I find mpl_toolkits.
  Because I install matplotlib with ipython and the command
  yum install python-matplotlib
  but as a result I have no axes3d.py file and when I tried the examples of
  the matplotlib site I get the following message:
  unknown projection 3d
 Apparently the toolkits mpl3d  is missing, which site can provide it?

  Best regards

  Jeanguillaume



Jeanguillaume,

Which version of matplotlib did you install?  The axes3d.py examples use a
very new feature that wasn't available in previous versions.  The current
examples can run with older versions of matplotlib by replacing the .gca()
or the .add_subplot() line with

ax = axes3d.Axes3D(fig)

However, you would not be able to do any 3d subplotting examples without the
latest version of matplotlib.

I hope that clears things up.

Ben Root
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Re: [Matplotlib-users] mpl_toolkits

2010-08-10 Thread John Hunter
On Tue, Aug 10, 2010 at 12:15 PM, c.jeang
christian.jeanguilla...@univ-angers.fr wrote:
 Hello,

  where can I find mpl_toolkits.
  Because I install matplotlib with ipython and the command
  yum install python-matplotlib
  but as a result I have no axes3d.py file and when I tried the examples of
  the matplotlib site I get the following message:
  unknown projection 3d
 Apparently the toolkits mpl3d  is missing, which site can provide it?


Most likely your matplotlib version provided by yum is out of date.
Check your version with

  import matplotlib
  print matplotlib.__version__

You can download the latest tarball from sourceforge:

  http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0/

See also the installing page:

  http://matplotlib.sourceforge.net/users/installing.html

particularly the part on Installing from source and below.  Perhaps
another yum user can advise you on the easiest ways to install the
build dependencies.

JDH

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[Matplotlib-users] Pie Charts, How to control pie chart size in figure?

2010-08-10 Thread Michael Waters
Hi, I am making a simple pie chart that needs to be small ~3x3 inches. 
The problem I am having is that the text labels get pushed out side the 
figure. Is there anyway to make the plot smaller relative to the figure 
size? Here is my code and the resulting plot:
from pylab import *

# make a square figure and axes
figure(1, figsize=(3,3))
ax = axes([0.0, 0.0, 1.0, 0.9])

labels = 'Central\nCampus','Medical\nCampus','North\nCampus'
fracs = [880,220,1000]

explode=(0.05, 0.05, 0.05)
ppl=pie(fracs, explode=explode, labels=labels, shadow=True,autopct='%1.0f%%')

title('GSRAs by Campus')

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Re: [Matplotlib-users] Fatal Python Error with 64 bit versions

2010-08-10 Thread stetrick



Christoph Gohlke wrote:
 
 
 
 On 8/9/2010 3:09 PM, stetrick wrote:

 I am now getting a message that says:

 Fatal Python error: PyEval_RestoreThread: NULL tstate

 This application has requested the Runtime to terminate it in an unusual
 way.

 This is with matplotlib 1.0.0, but all versions are 64-bit (python,
 numpy,
 matplotlib).

 Is this something I can fix or ignore?

 Thanks!
 
 Using Numpy 1.4.1 on Windows 7 64 bit.
 Python version 2.6.5 for 64 bit as well.  All from your website of
 pre-compiled stuff.
 
 Thanks for doing that!
 
 
 
 Which version of numpy are you using? Assuming you are talking about 
 matplotlib-1.0.0.win-amd64-py2.6.exe, you need 
 numpy-1.4.1.win-amd64-py2.6.exe.
 
 Christoph
 
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 Matplotlib-users@lists.sourceforge.net
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Re: [Matplotlib-users] Fatal Python Error with 64 bit versions

2010-08-10 Thread Eric Firing
On 08/10/2010 09:10 AM, Christoph Gohlke wrote:


 On 8/10/2010 11:53 AM, stetrick wrote:

 Should probably indicate that it is the MKV versions


 stetrick wrote:



 Christoph Gohlke wrote:



 On 8/9/2010 3:09 PM, stetrick wrote:

 I am now getting a message that says:

 Fatal Python error: PyEval_RestoreThread: NULL tstate

 This application has requested the Runtime to terminate it in an unusual
 way.

 This is with matplotlib 1.0.0, but all versions are 64-bit (python,
 numpy,
 matplotlib).

 Is this something I can fix or ignore?

 Thanks!

 Using Numpy 1.4.1 on Windows 7 64 bit.
 Python version 2.6.5 for 64 bit as well.  All from your website of
 pre-compiled stuff.

 Thanks for doing that!


 Those versions should work. Can you post some more details how you run
 python and a script that shows this problem. I assume you can import and
 use matplotlib and the crash appears when exiting Python? It might just
 be the old known bug in the Tk backend, not anything specific to the 64
 bit version. See
 http://www.mail-archive.com/matplotlib-users@lists.sourceforge.net/msg15342.html

 --
 Christoph

I thought that was fixed:
http://sourceforge.net/tracker/?func=detailaid=3015013group_id=80706atid=560720

Eric

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Re: [Matplotlib-users] Fatal Python Error with 64 bit versions

2010-08-10 Thread Christoph Gohlke


On 8/10/2010 12:26 PM, Eric Firing wrote:
 On 08/10/2010 09:10 AM, Christoph Gohlke wrote:


 On 8/10/2010 11:53 AM, stetrick wrote:

 Should probably indicate that it is the MKV versions


 stetrick wrote:



 Christoph Gohlke wrote:



 On 8/9/2010 3:09 PM, stetrick wrote:

 I am now getting a message that says:

 Fatal Python error: PyEval_RestoreThread: NULL tstate

 This application has requested the Runtime to terminate it in an unusual
 way.

 This is with matplotlib 1.0.0, but all versions are 64-bit (python,
 numpy,
 matplotlib).

 Is this something I can fix or ignore?

 Thanks!

 Using Numpy 1.4.1 on Windows 7 64 bit.
 Python version 2.6.5 for 64 bit as well.  All from your website of
 pre-compiled stuff.

 Thanks for doing that!


 Those versions should work. Can you post some more details how you run
 python and a script that shows this problem. I assume you can import and
 use matplotlib and the crash appears when exiting Python? It might just
 be the old known bug in the Tk backend, not anything specific to the 64
 bit version. See
 http://www.mail-archive.com/matplotlib-users@lists.sourceforge.net/msg15342.html

 --
 Christoph

 I thought that was fixed:
 http://sourceforge.net/tracker/?func=detailaid=3015013group_id=80706atid=560720

 Eric


Yes the bug is fixed. If the program is terminated properly. However, 
you can still crash the Python interpreter if you close or kill the 
console window while the following script is running.

python -cfrom matplotlib import pyplot;pyplot.hot();input()

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Re: [Matplotlib-users] Building matplotlib from source with libpng (png.h) installed via fink on Mac OS X

2010-08-10 Thread Friedrich Romstedt
Are you on OSX 10.5 or 10.6?  I'm asking because it's important for
others when you're on 10.5 because you're using gcc-4.0 then, while
10.6 users have at least for non-Python (distutils) compilations
gcc-4.2 as default.

Friedrich

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Re: [Matplotlib-users] Building matplotlib from source with libpng (png.h) installed via fink on Mac OS X

2010-08-10 Thread Markus Baden

On Aug 11, 2010, at 6:09 AM, Friedrich Romstedt wrote:

 Are you on OSX 10.5 or 10.6?  I'm asking because it's important for
 others when you're on 10.5 because you're using gcc-4.0 then, while
 10.6 users have at least for non-Python (distutils) compilations
 gcc-4.2 as default.

I'm running Mac OS X 10.5.8.

Markus


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Re: [Matplotlib-users] show() blocks script execution for TkAgg from ipython -pylab

2010-08-10 Thread Ryan Krauss
In case this is helpful:

E:\C:\Python26\python.exe ipython_show_test.py --verbose-debug
$HOME=D:\
CONFIGDIR=D:\.matplotlib
matplotlib data path C:\Python26\lib\site-packages\matplotlib\mpl-data
loaded rc file D:\.matplotlib\matplotlibrc
matplotlib version 1.0.0
verbose.level debug
interactive is False
units is False
platform is win32
loaded modules: ['numpy.lib._iotools', 'xml.sax.urlparse', 'distutils', 'numpy.l
ib.npyio', 'functools', 'pylab', '_bisect', 'subprocess', 'gc', 'matplotlib.temp
file', 'distutils.sysconfig', 'ctypes._endian', 'encodings.encodings', 'matplotl
ib.colors', 'msvcrt', 'numpy.testing.sys', 'numpy.core.info', 'xml', 'numpy.fft.
types', 'numpy.ma.cPickle', 'matplotlib.copy', 'numpy.matrixlib.defmatrix', 'num
py.random.info', 'tempfile', 'numpy.compat.types', 'base64', 'numpy.linalg', 'ma
tplotlib.threading', 'numpy.core.machar', 'numpy.testing.types', 'numpy.testing'
, 'bisect', 'collections', 'numpy.polynomial.sys', 'numpy.core.umath', '_struct'
, 'distutils.types', 'numpy.testing.operator', 'numpy.lib.numpy', 'numpy.core.sc
alarmath', 'numpy.ma.sys', 'matplotlib.matplotlib', 'string', 'matplotlib.subpro
cess', 'numpy.testing.os', 'matplotlib.locale', 'numpy.lib.arraysetops', 'numpy.
testing.unittest', 'numpy.lib.math', 'textwrap', 'matplotlib.__future__', 'ssl',
 'numpy.testing.re', 'itertools', 'numpy.version', 'numpy.lib.re', 'distutils.re
', 'numpy.matrixlib.sys', 'ctypes.os', 'numpy.core.os', 'numpy.lib.type_check',
'numpy.compat.sys', 'numpy.lib.__builtin__', 'signal', 'numpy.lib.types', 'numpy
.lib._datasource', 'random', 'threading', 'numpy.fft.fftpack_lite', 'matplotlib.
cbook', 'ctypes.ctypes', 'xml.sax.xmlreader', 'numpy.polynomial.string', 'distut
ils.version', 'cStringIO', 'numpy.polynomial', 'numpy.numpy', 'matplotlib.String
IO', 'numpy.ma.extras', 'locale', 'numpy.add_newdocs', 'numpy.core.getlimits', '
xml.sax.saxutils', 'numpy.lib.sys', 'encodings', 'numpy.ma.itertools', 'array',
'StringIO', 'abc', 'numpy.matrixlib', 'numpy.ctypes', 'numpy.testing.decorators'
, 'matplotlib.warnings', 'rfc822', 'matplotlib.string', '_subprocess', 'urllib',
 'matplotlib.sys', 're', 'numpy.lib._compiled_base', 'ntpath', 'new', 'numpy.ran
dom.mtrand', 'urllib2', 'matplotlib.cPickle', 'math', 'numpy.fft.helper', 'numpy
.ma.warnings', 'matplotlib.numpy', 'UserDict', 'numpy.lib.function_base', 'distu
tils.os', 'matplotlib', 'numpy.fft.numpy', 'xml.sax.codecs', 'exceptions', 'nump
y.lib.info', 'numpy.core.numerictypes', 'ctypes', 'numpy.lib.warnings', 'ctypes.
struct', 'codecs', 'numpy.core._sort', 'numpy.os', 'struct', '_functools', '_loc
ale', 'numpy.__builtin__', 'matplotlib.sre_constants', 'matplotlib.os', 'thread'
, 'numpy.lib.ufunclike', 'numpy.core.memmap', 'traceback', 'numpy.testing.warnin
gs', 'weakref', 'numpy.core._internal', 'numpy.fft.fftpack', 'numpy.linalg.lapac
k_lite', 'numpy.ma', 'distutils.sys', 'os', 'numpy.matrixlib.numpy', 'httplib',
'numpy.lib.itertools', '__future__', '_collections', 'xml.sax.types', 'matplotli
b.traceback', '_sre', 'unittest', 'numpy.core.sys', 'numpy.random', 'numpy.linal
g.numpy', '__builtin__', 'numpy.lib.twodim_base', 'numpy.ma.core', 'matplotlib.r
e', 'numpy.core.cPickle', 'operator', 'numpy.polynomial.polytemplate', 'numpy.co
re.arrayprint', 'distutils.string', 'numpy.lib.arrayterator', 'ctypes._ctypes',
'ctypes.sys', 'matplotlib.errno', 'numpy.testing.nosetester', 'posixpath', 'nump
y.lib.financial', 'numpy.core.multiarray', 'errno', '_socket', 'binascii', 'sre_
constants', 'datetime', 'numpy.core.shape_base', 'xml.sax.handler', 'os.path', '
numpy.core.function_base', 'numpy.compat.py3k', '_ctypes', 'numpy.lib.stride_tri
cks', 'numpy.core.numpy', 'numpy', '_warnings', 'numpy.polynomial.chebyshev', 'm
atplotlib.types', 'xml.sax.os', 'cPickle', 'encodings.__builtin__', 'numpy.polyn
omial.warnings', 'matplotlib.xml', 'matplotlib.new', '_codecs', 'numpy.lib.opera
tor', 'numpy.polynomial.polynomial', 'encodings.cp1252', 'matplotlib.pyparsing',
 'nturl2path', 'numpy.ma.numpy', 'copy', 'numpy.core.re', 'socket', 'numpy.core.
fromnumeric', 'hashlib', 'numpy.ctypeslib', 'keyword', 'numpy.lib.scimath', 'num
py.fft', 'numpy.lib', 'numpy.random.numpy', 'matplotlib.urllib2', 'matplotlib.ra
ndom', 'numpy.polynomial.__future__', 'encodings.aliases', 'matplotlib.distutils
', 'fnmatch', 'sre_parse', 'numpy.core.ctypes', 'mimetools', 'distutils.distutil
s', 'copy_reg', 'sre_compile', 'xml.sax', '_hashlib', '_random', 'numpy.lib.__fu
ture__', 'site', 'numpy.lib.polynomial', 'numpy.compat', 'numpy._import_tools',
'zipimport', '__main__', 'numpy.fft.info', 'numpy.core.records', 'shutil', 'nump
y.lib.cPickle', 'numpy.sys', 'matplotlib.weakref', 'xml.sax.urllib', 'numpy.core
._dotblas', 'numpy.testing.traceback', 'strop', 'numpy.testing.numpytest', 'nump
y.polynomial.numpy', 'numpy.core.numeric', 'numpy.linalg.info', 'encodings.codec
s', '_abcoll', 'numpy.core', 'matplotlib.rcsetup', 'matplotlib.time', 'nt', 'xml
.sax._exceptions', 'genericpath', 'stat', '_ssl',