[Matplotlib-users] How to plot a 2d streamline in 3d view in matplotlib
Hi, I need to plot a 2d streamline in 3d view like this http://stackoverflow.com/questions/14963004/continuous-shades-on-matplotlib-3d-surface. As suggested by the post http://stackoverflow.com/questions/16252231/symmetric-streamplot-with-matplotlib/16373060#16373060, I need to extract streamlines and arrows from a 2d plot and then transform it to 3d data. How to transform this 2d streamline data to 3d data and plot using mplot3d? Thanks in advance. Raj -- ## Raj Kumar Manna Complex Fluid Biological Physics Lab IIT Madras Ph. No. 8144637401 alternate email: r...@physics.iitm.ac.in rajphysics@gmail.com -- One dashboard for servers and applications across Physical-Virtual-Cloud Widest out-of-the-box monitoring support with 50+ applications Performance metrics, stats and reports that give you Actionable Insights Deep dive visibility with transaction tracing using APM Insight. http://ad.doubleclick.net/ddm/clk/290420510;117567292;y___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] How to plot a 2d streamline in 3d view in matplotlib
Well, there is the new 3D quiver feature: http://matplotlib.org/examples/mplot3d/quiver3d_demo.html. Not quite streamlines, but it might do in a pinch. Another approach: There is the 2d streamplot() function that returns a specialized object. From the docstring: ``` Returns: *stream_container* : StreamplotSet Container object with attributes - lines: `matplotlib.collections.LineCollection` of streamlines - arrows: collection of `matplotlib.patches.FancyArrowPatch` objects representing arrows half-way along stream lines. ``` You might be able to get away with using the lines object and feeding it through art3d.line_collection_2d_to_3d(), kind of like how it is done for pathpatch objects here: http://matplotlib.org/examples/mplot3d/pathpatch3d_demo.html. You might also be able to pass the individual objects in the arrows list through art3d.patch_2d_to_3d(), but I have no clue if that would actually work or not. I hope that helps! Ben Root On Thu, May 21, 2015 at 7:45 AM, Raj Kumar Manna rajphysics@gmail.com wrote: Hi, I need to plot a 2d streamline in 3d view like this http://stackoverflow.com/questions/14963004/continuous-shades-on-matplotlib-3d-surface. As suggested by the post http://stackoverflow.com/questions/16252231/symmetric-streamplot-with-matplotlib/16373060#16373060, I need to extract streamlines and arrows from a 2d plot and then transform it to 3d data. How to transform this 2d streamline data to 3d data and plot using mplot3d? Thanks in advance. Raj -- ## Raj Kumar Manna Complex Fluid Biological Physics Lab IIT Madras Ph. No. 8144637401 alternate email: r...@physics.iitm.ac.in rajphysics@gmail.com -- One dashboard for servers and applications across Physical-Virtual-Cloud Widest out-of-the-box monitoring support with 50+ applications Performance metrics, stats and reports that give you Actionable Insights Deep dive visibility with transaction tracing using APM Insight. http://ad.doubleclick.net/ddm/clk/290420510;117567292;y ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- One dashboard for servers and applications across Physical-Virtual-Cloud Widest out-of-the-box monitoring support with 50+ applications Performance metrics, stats and reports that give you Actionable Insights Deep dive visibility with transaction tracing using APM Insight. http://ad.doubleclick.net/ddm/clk/290420510;117567292;y___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
Re: [Matplotlib-users] How to plot a 2d streamline in 3d view in matplotlib
Its giving a error,
art3d.linecollection_2d_to_3d(stream.lines)
AttributeError: 'module' object has no attribute 'linecollection_2d_to_3d'
Here is my script,
import matplotlib.pyplot as plt
from matplotlib.patches import Circle, PathPatch
from mpl_toolkits.mplot3d import Axes3D
import mpl_toolkits.mplot3d.art3d as art3d
import numpy as np
from pylab import *
from matplotlib.collections import LineCollection
fig = plt.figure()
ax=fig.gca(projection='3d')
f=np.loadtxt('flow-velocity343.dat')
dx,dz=1.0,1.0
xmin,zmin,xmax,zmax=min(f[:,0]),min(f[:,2]),max(f[:,0]),max(f[:,2])
nbinx,nbinz=int((xmax-xmin)/dx)+1,int((zmax-zmin)/dz)+1
Ux=np.zeros([nbinz,nbinx],'d')
Uy=np.zeros([nbinz,nbinx],'d')
Uz=np.zeros([nbinz,nbinx],'d')
speed=np.zeros([nbinz,nbinx],'d')
logv=np.zeros([nbinz,nbinx],'d')
for f1 in f:
binx,binz=int((f1[0]-xmin)/dx),int((f1[2]-zmin)/dz)
Ux[binz][binx]=f1[3]
Uy[binz][binx]=f1[4]
Uz[binz][binx]=f1[5]
speed[binz][binx] = np.sqrt( Ux[binz][binx]*Ux[binz][binx] +
Uz[binz][binx]*Uz[binz][binx] + Uy[binz][binx]*Uy[binz][binx] )
logv[binz][binx] = log(speed[binz][binx])
x,z=np.arange(xmin,xmax+dx,dx),np.arange(zmin,zmax+dz,dz)
y=np.arange(0,71,1)
X,Z=np.meshgrid(x,z)
stream = ax.streamplot(X, Z, Ux, Uz, color='black', linewidth=2)
#lines = stream.lines.get_paths()
art3d.linecollection_2d_to_3d(stream.lines)
for p in stream.arrows:
art3d.patch_2d_to_3d(p)
plt.show()
Thanks
Raj
On Thu, May 21, 2015 at 9:19 PM, Benjamin Root ben.r...@ou.edu wrote:
(keeping the discussion on the mailing list)
The object you get back have two attributes: lines and arrows. This is
just psuedo-code, but it would look something like this:
```
stream = ax.streamplot(..)
art3d.linecollection_2d_to_3d(stream.lines, )
for p in stream.arrows:
art3d.patch_2d_to_3d(p, ...)
```
Again, I have no clue if this actually would work. I haven't tried doing
this myself.
Ben Root
On Thu, May 21, 2015 at 11:39 AM, Raj Kumar Manna
rajphysics@gmail.com wrote:
Thanks for your quick reply.
I have plotted the streamplot in 2d . I am not able to extract lines or
arrow from streamplot. I am new user of matplotlib, can you please tell me
the syntax to extract lines and arrows from streamplot().
Thanks for you help.
Raj
On Thu, May 21, 2015 at 8:30 PM, Benjamin Root ben.r...@ou.edu wrote:
Well, there is the new 3D quiver feature:
http://matplotlib.org/examples/mplot3d/quiver3d_demo.html. Not quite
streamlines, but it might do in a pinch.
Another approach:
There is the 2d streamplot() function that returns a specialized object.
From the docstring:
```
Returns:
*stream_container* : StreamplotSet
Container object with attributes
- lines: `matplotlib.collections.LineCollection` of
streamlines
- arrows: collection of
`matplotlib.patches.FancyArrowPatch`
objects representing arrows half-way along stream
lines.
```
You might be able to get away with using the lines object and feeding
it through art3d.line_collection_2d_to_3d(), kind of like how it is done
for pathpatch objects here:
http://matplotlib.org/examples/mplot3d/pathpatch3d_demo.html. You might
also be able to pass the individual objects in the arrows list through
art3d.patch_2d_to_3d(), but I have no clue if that would actually work or
not.
I hope that helps!
Ben Root
On Thu, May 21, 2015 at 7:45 AM, Raj Kumar Manna
rajphysics@gmail.com wrote:
Hi,
I need to plot a 2d streamline in 3d view like this
http://stackoverflow.com/questions/14963004/continuous-shades-on-matplotlib-3d-surface.
As suggested by the post
http://stackoverflow.com/questions/16252231/symmetric-streamplot-with-matplotlib/16373060#16373060,
I need to extract streamlines and arrows from a 2d plot and then transform
it to 3d data. How to transform this 2d streamline data to 3d data and plot
using mplot3d?
Thanks in advance.
Raj
--
##
Raj Kumar Manna
Complex Fluid Biological Physics Lab
IIT Madras
Ph. No. 8144637401
alternate email: r...@physics.iitm.ac.in rajphysics@gmail.com
--
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
___
Matplotlib-users mailing list
Matplotlib-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/matplotlib-users
--
Re: [Matplotlib-users] How to plot a 2d streamline in 3d view in matplotlib
Sorry, it is line_collection_2d_to_3d().
On Thu, May 21, 2015 at 12:02 PM, Raj Kumar Manna rajphysics@gmail.com
wrote:
Its giving a error,
art3d.linecollection_2d_to_3d(stream.lines)
AttributeError: 'module' object has no attribute 'linecollection_2d_to_3d'
Here is my script,
import matplotlib.pyplot as plt
from matplotlib.patches import Circle, PathPatch
from mpl_toolkits.mplot3d import Axes3D
import mpl_toolkits.mplot3d.art3d as art3d
import numpy as np
from pylab import *
from matplotlib.collections import LineCollection
fig = plt.figure()
ax=fig.gca(projection='3d')
f=np.loadtxt('flow-velocity343.dat')
dx,dz=1.0,1.0
xmin,zmin,xmax,zmax=min(f[:,0]),min(f[:,2]),max(f[:,0]),max(f[:,2])
nbinx,nbinz=int((xmax-xmin)/dx)+1,int((zmax-zmin)/dz)+1
Ux=np.zeros([nbinz,nbinx],'d')
Uy=np.zeros([nbinz,nbinx],'d')
Uz=np.zeros([nbinz,nbinx],'d')
speed=np.zeros([nbinz,nbinx],'d')
logv=np.zeros([nbinz,nbinx],'d')
for f1 in f:
binx,binz=int((f1[0]-xmin)/dx),int((f1[2]-zmin)/dz)
Ux[binz][binx]=f1[3]
Uy[binz][binx]=f1[4]
Uz[binz][binx]=f1[5]
speed[binz][binx] = np.sqrt( Ux[binz][binx]*Ux[binz][binx] +
Uz[binz][binx]*Uz[binz][binx] + Uy[binz][binx]*Uy[binz][binx] )
logv[binz][binx] = log(speed[binz][binx])
x,z=np.arange(xmin,xmax+dx,dx),np.arange(zmin,zmax+dz,dz)
y=np.arange(0,71,1)
X,Z=np.meshgrid(x,z)
stream = ax.streamplot(X, Z, Ux, Uz, color='black', linewidth=2)
#lines = stream.lines.get_paths()
art3d.linecollection_2d_to_3d(stream.lines)
for p in stream.arrows:
art3d.patch_2d_to_3d(p)
plt.show()
Thanks
Raj
On Thu, May 21, 2015 at 9:19 PM, Benjamin Root ben.r...@ou.edu wrote:
(keeping the discussion on the mailing list)
The object you get back have two attributes: lines and arrows. This
is just psuedo-code, but it would look something like this:
```
stream = ax.streamplot(..)
art3d.linecollection_2d_to_3d(stream.lines, )
for p in stream.arrows:
art3d.patch_2d_to_3d(p, ...)
```
Again, I have no clue if this actually would work. I haven't tried doing
this myself.
Ben Root
On Thu, May 21, 2015 at 11:39 AM, Raj Kumar Manna
rajphysics@gmail.com wrote:
Thanks for your quick reply.
I have plotted the streamplot in 2d . I am not able to extract lines or
arrow from streamplot. I am new user of matplotlib, can you please tell me
the syntax to extract lines and arrows from streamplot().
Thanks for you help.
Raj
On Thu, May 21, 2015 at 8:30 PM, Benjamin Root ben.r...@ou.edu wrote:
Well, there is the new 3D quiver feature:
http://matplotlib.org/examples/mplot3d/quiver3d_demo.html. Not quite
streamlines, but it might do in a pinch.
Another approach:
There is the 2d streamplot() function that returns a specialized
object. From the docstring:
```
Returns:
*stream_container* : StreamplotSet
Container object with attributes
- lines: `matplotlib.collections.LineCollection` of
streamlines
- arrows: collection of
`matplotlib.patches.FancyArrowPatch`
objects representing arrows half-way along stream
lines.
```
You might be able to get away with using the lines object and feeding
it through art3d.line_collection_2d_to_3d(), kind of like how it is done
for pathpatch objects here:
http://matplotlib.org/examples/mplot3d/pathpatch3d_demo.html. You
might also be able to pass the individual objects in the arrows list
through art3d.patch_2d_to_3d(), but I have no clue if that would actually
work or not.
I hope that helps!
Ben Root
On Thu, May 21, 2015 at 7:45 AM, Raj Kumar Manna
rajphysics@gmail.com wrote:
Hi,
I need to plot a 2d streamline in 3d view like this
http://stackoverflow.com/questions/14963004/continuous-shades-on-matplotlib-3d-surface.
As suggested by the post
http://stackoverflow.com/questions/16252231/symmetric-streamplot-with-matplotlib/16373060#16373060,
I need to extract streamlines and arrows from a 2d plot and then transform
it to 3d data. How to transform this 2d streamline data to 3d data and
plot
using mplot3d?
Thanks in advance.
Raj
--
##
Raj Kumar Manna
Complex Fluid Biological Physics Lab
IIT Madras
Ph. No. 8144637401
alternate email: r...@physics.iitm.ac.in rajphysics@gmail.com
--
One dashboard for servers and applications across
Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable
Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
___
Matplotlib-users
Re: [Matplotlib-users] How to plot a 2d streamline in 3d view in matplotlib
(keeping the discussion on the mailing list) The object you get back have two attributes: lines and arrows. This is just psuedo-code, but it would look something like this: ``` stream = ax.streamplot(..) art3d.linecollection_2d_to_3d(stream.lines, ) for p in stream.arrows: art3d.patch_2d_to_3d(p, ...) ``` Again, I have no clue if this actually would work. I haven't tried doing this myself. Ben Root On Thu, May 21, 2015 at 11:39 AM, Raj Kumar Manna rajphysics@gmail.com wrote: Thanks for your quick reply. I have plotted the streamplot in 2d . I am not able to extract lines or arrow from streamplot. I am new user of matplotlib, can you please tell me the syntax to extract lines and arrows from streamplot(). Thanks for you help. Raj On Thu, May 21, 2015 at 8:30 PM, Benjamin Root ben.r...@ou.edu wrote: Well, there is the new 3D quiver feature: http://matplotlib.org/examples/mplot3d/quiver3d_demo.html. Not quite streamlines, but it might do in a pinch. Another approach: There is the 2d streamplot() function that returns a specialized object. From the docstring: ``` Returns: *stream_container* : StreamplotSet Container object with attributes - lines: `matplotlib.collections.LineCollection` of streamlines - arrows: collection of `matplotlib.patches.FancyArrowPatch` objects representing arrows half-way along stream lines. ``` You might be able to get away with using the lines object and feeding it through art3d.line_collection_2d_to_3d(), kind of like how it is done for pathpatch objects here: http://matplotlib.org/examples/mplot3d/pathpatch3d_demo.html. You might also be able to pass the individual objects in the arrows list through art3d.patch_2d_to_3d(), but I have no clue if that would actually work or not. I hope that helps! Ben Root On Thu, May 21, 2015 at 7:45 AM, Raj Kumar Manna rajphysics@gmail.com wrote: Hi, I need to plot a 2d streamline in 3d view like this http://stackoverflow.com/questions/14963004/continuous-shades-on-matplotlib-3d-surface. As suggested by the post http://stackoverflow.com/questions/16252231/symmetric-streamplot-with-matplotlib/16373060#16373060, I need to extract streamlines and arrows from a 2d plot and then transform it to 3d data. How to transform this 2d streamline data to 3d data and plot using mplot3d? Thanks in advance. Raj -- ## Raj Kumar Manna Complex Fluid Biological Physics Lab IIT Madras Ph. No. 8144637401 alternate email: r...@physics.iitm.ac.in rajphysics@gmail.com -- One dashboard for servers and applications across Physical-Virtual-Cloud Widest out-of-the-box monitoring support with 50+ applications Performance metrics, stats and reports that give you Actionable Insights Deep dive visibility with transaction tracing using APM Insight. http://ad.doubleclick.net/ddm/clk/290420510;117567292;y ___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users -- ## Raj Kumar Manna Complex Fluid Biological Physics Lab IIT Madras Ph. No. 8144637401 alternate email: r...@physics.iitm.ac.in rajphysics@gmail.com -- One dashboard for servers and applications across Physical-Virtual-Cloud Widest out-of-the-box monitoring support with 50+ applications Performance metrics, stats and reports that give you Actionable Insights Deep dive visibility with transaction tracing using APM Insight. http://ad.doubleclick.net/ddm/clk/290420510;117567292;y___ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users
