[Matplotlib-users] Matplotlib in Cygwin

2008-10-20 Thread Pete
Has anyone had any luck compiling Matplotlib using cygwin?
Out of the box I get the following: (I have numpy, tcl/tk and libpng1.2
installed)

~/matpl/matplotlib-0.98.3$ python setup.py build

BUILDING MATPLOTLIB
matplotlib: 0.98.3
python: 2.5.1 (r251:54863, May 18 2007, 16:56:43)  [GCC
3.4.4 (cygming special, gdc 0.12, using dmd 0.125)]
  platform: cygwin

REQUIRED DEPENDENCIES
 numpy: 1.2.0
 freetype2: 9.18.3

OPTIONAL BACKEND DEPENDENCIES
libpng: found, but unknown version (no pkg-config)
* Could not find 'libpng' headers in any of
* '/usr/include', '.'
Traceback (most recent call last):
  File "setup.py", line 125, in 
if check_for_tk() or (options['build_tkagg'] is True):
  File "/cygdrive/c/linuxshare/matpl/matplotlib-0.98.3/setupext.py", line
841, in check_for_tk
explanation = add_tk_flags(module)
  File "/cygdrive/c/linuxshare/matpl/matplotlib-0.98.3/setupext.py", line
1084, in add_tk_flags
result = parse_tcl_config(tcl_lib_dir, tk_lib_dir)
  File "/cygdrive/c/linuxshare/matpl/matplotlib-0.98.3/setupext.py", line
946, in parse_tcl_config
tk_lib = tk_vars.get("default", "TK_LIB_SPEC")[1:-1].split()[0][2:]
IndexError: list index out of range


Any help or ideas appreciated!
Thanks,
Pete
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Re: [Matplotlib-users] Matplotlib in Cygwin

2008-10-21 Thread Pete
2008/10/20 John Hunter <[EMAIL PROTECTED]>

> This is probably something you will have to debug yourself, since it
> is dependent on the TK you have installed on your system, but it is
> fairly easy to do.  Edit setupext.py, store the results of
>
>  tmp = tk_vars.get("default", "TK_LIB_SPEC")[1:-1].split()
>  print tmp
>
> and see what is returned.   The setup code is trying to index into
> this data structure, and what is coming back is not what is expected.
> It would be helpful to see what is coming back.
>
> Note this call happens in a large try except block, so you could add
> your exception (IndexError) to the list of exceptions that are caught,
> which will return None from this function.  This will keep your build
> from crashing.  Alternatively, if you know you want some backend like
> gtkagg or wxagg and don't need tkagg, you can turn this off by copying
> setup.cfg.template to setup.cfg and manually customizing the backends
> which are built.
>
> But the ideal will be to fix the tk config bug and send us  a patch .
>
> JDH


Hi John,

Thanks - that's a help. TK_LIB_SPEC is apparently empty -
tk_vars.get("default", "TK_LIB_SPEC") returns ''. See attached patch for an
attempt to manage this condition.

This brings me on to my next problem.. here's the result of the patched
script. is this new error likely to be connected with the above issue?
(I'm using an up-to-date cygwin installation)


~/matpl/svn/matplotlib$ python setup.py build

BUILDING MATPLOTLIB
matplotlib: 0.98.3
python: 2.5.1 (r251:54863, May 18 2007, 16:56:43)  [GCC
3.4.4 (cygming special, gdc 0.12, using dmd 0.125)]
  platform: cygwin

REQUIRED DEPENDENCIES
 numpy: 1.2.0
 freetype2: 9.18.3

OPTIONAL BACKEND DEPENDENCIES
libpng: found, but unknown version (no pkg-config)
* Could not find 'libpng' headers in any of
* '/usr/include', '.'
   Tkinter: Tkinter: 50704, Tk: 8.4, Tcl: 8.4
* Guessing the library and include directories for
* Tcl and Tk because the tclConfig.sh and
* tkConfig.sh could not be found and/or parsed.
  wxPython: no
* wxPython not found
  Gtk+: no
* Building for Gtk+ requires pygtk; you must be able
* to "import gtk" in your build/install environment
Qt: no
   Qt4: no
 Cairo: no

OPTIONAL DATE/TIMEZONE DEPENDENCIES
  datetime: present, version unknown
  dateutil: matplotlib will provide
  pytz: matplotlib will provide
adding pytz

OPTIONAL USETEX DEPENDENCIES
dvipng: no
   ghostscript: /bin/sh: gs: command not found
 latex: no
   pdftops: 3.02

EXPERIMENTAL CONFIG PACKAGE DEPENDENCIES
 configobj: matplotlib will provide
  enthought.traits: no

[Edit setup.cfg to suppress the above messages]

pymods ['pylab', 'configobj']
packages ['matplotlib', 'matplotlib.backends', 'matplotlib.projections',
'mpl_toolkits', 'matplotlib.numerix', 'matplotlib.numerix.mlab', '
matplotlib.numerix.ma', 'matplotlib.numerix.npyma',
'matplotlib.numerix.linear_algebra', 'matplotlib.numerix.random_array',
'matplotlib.numerix.fft', 'matplotlib.delaunay', 'pytz', 'dateutil',
'dateutil/zoneinfo', 'matplotlib.config']
running build
running build_py
creating build
...
...
running build_ext
building 'matplotlib.ft2font' extension
creating build/temp.cygwin-1.5.25-i686-2.5
creating build/temp.cygwin-1.5.25-i686-2.5/src
creating build/temp.cygwin-1.5.25-i686-2.5/CXX
gcc -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes
-I/usr/lib/python2.5/site-packages/numpy-1.2.0-py2.5-cygwin-1.5.25-i686.egg/numpy/core/include
-I/usr/include/freetype2 -I/usr/include -I. -I/usr/include/python2.5 -c
src/ft2font.cpp -o build/temp.cygwin-1.5.25-i686-2.5/src/ft2font.o
Unable to free colormap, palette is still selected.
gcc: fork: Resource temporarily unavailable
error: command 'gcc' failed with exit status 1


setupext_empty_tk_lib_fix.patch
Description: Binary data
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Re: [Matplotlib-users] failure with python setup.py build

2008-10-21 Thread Pete
See my previous posts, subject "Matplotlib in cygwin". I attached a patch in
that thread that solves this problem for me, but it looks like I have other
more serious problems with cygwin on my machine.
Please let us know if you get it to work.

2008/10/20 Terrence Brannon <[EMAIL PROTECTED]>

> Hello, I would like to know what I can do to fix this problem.
>
>
> [EMAIL PROTECTED] /cygdrive/c/downloads/matplotlib-0.98.3 : python
> setup.py build
>
> 
> BUILDING MATPLOTLIB
>matplotlib: 0.98.3
>python: 2.5.2 Stackless 3.1b3 060516 (release25-maint, Oct
>1 2008, 19:33:07)  [GCC 3.4.4 (cygming special, gdc
>0.12, using dmd 0.125)]
>  platform: cygwin
>
> REQUIRED DEPENDENCIES
> numpy: 1.2.0
> freetype2: 9.18.3
>
> OPTIONAL BACKEND DEPENDENCIES
>libpng: 1.2.12
> Traceback (most recent call last):
>  File "setup.py", line 125, in 
>if check_for_tk() or (options['build_tkagg'] is True):
>  File "/cygdrive/c/downloads/matplotlib-0.98.3/setupext.py", line 841,
> in check_for_tk
>explanation = add_tk_flags(module)
>  File "/cygdrive/c/downloads/matplotlib-0.98.3/setupext.py", line 1084,
> in add_tk_flags
>result = parse_tcl_config(tcl_lib_dir, tk_lib_dir)
>  File "/cygdrive/c/downloads/matplotlib-0.98.3/setupext.py", line 946,
> in parse_tcl_config
>tk_lib = tk_vars.get("default", "TK_LIB_SPEC")[1:-1].split()[0][2:]
> IndexError: list index out of range
> [EMAIL PROTECTED] /cygdrive/c/downloads/matplotlib-0.98.3 :
>
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[Matplotlib-users] heatmap with varying size boxes?

2009-08-18 Thread Pete Shepard
Hello,

I have a list of X,Y coordinates and a ratio associated with each
coordinate. The X and Y coordinates are continuous but random from 50-500, I
would like to make a continuous heatmap of the ratios at each coordinate.
One caveat is that the coordinates are clustered together do some bixes
might have too little data. I am wondering if there is a way that R can
automatically adjust box sizes? Sample data set is below

TIA

XYRATIO
5056.1
5059.1
5254.2
500393.9
45036.7
250190.7
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[Matplotlib-users] 1d heat map

2011-07-20 Thread Pete Shepard
Hello List,

I am trying to use the pylab.contourf(X,Y,Z,100) function but I would like
to mplot a 1 dimensional heatmap instead of a 2 dimensional heatmap, Perhaps
"contourf" is not the solution but I do like these plots.

Any suggestions?

TIA
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Re: [Matplotlib-users] Problem with cygwin/ipython interactive mode

2008-01-23 Thread Pete Forman
[EMAIL PROTECTED] writes:

 > On a more general note it seems there are dozens of different ways
 > to run matplotlib under windows.

TkAgg gave me the same set of problems as you on Windows (native).
I was able to use WxAgg instead.  wxPython 2.8 did not work but
switching to 2.6 cured that.  IIRC others hacked some binaries to get
2.8 going.
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WesternGeco  -./\.-   by myself and does not represent
[EMAIL PROTECTED]-./\.-   the opinion of Schlumberger or
http://petef.port5.com   -./\.-   WesternGeco.


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