Re: [nysbirds-l] (semi-)official NYC checklist ? - SUMMARY

2010-11-01 Thread Phil Jeffrey
Every so often I get a little tweaked over the hype associated with eBird.
Yes, it's a useful endeavor.
Yes, it's actual science - but it's science with a large error level
in the data, and the error isn't trivial to estimate.
It has the sort of error level I associate with a badly-controlled
Sociology experiment.
Speaking as a professional scientist in the biological sciences, I'd
like to see the quality of some of those journals - the "peer reviewed
publication" in Nature below is just a News article - not peer
reviewed and just fluff.  That's either sloppy or disingenuous.  The
P.N.A.S. article might be worth a look at - that's the second best
journal in that list.

But "Bulletin of the American Society for Information Science and Technology".
Since Monday Night Football is on in the background as I write this:
Who are we kidding ?  C'mon man.

I made the Swiss Cheese comment:
Ben C. and I were using eBird to look at Prothonotary records with a
view to potential breeding populations north of NYC (there are some on
the nw of NY State).
Now I actually *know* at least some of the Prothonotary records in
NYC.  Many of these are simply not present in the database. Cornell
doesn't mine this list or eBirdsNYC for those records, it relies on
contributors which are a small subset of the birding population to
report.  NYSBirds and eBirdsNYC have the same thing - a small minority
report sightings.  However those lists don't purport to be a
representative record of sightings.

Other comments like: "robust verification"  are largely meaningless if
you have to say: "is it getting better every month".  Robust
verification would require actual checking of every reported sighting,
not flagging the most error-prone observations using a very simple
probability model.  I wonder how many House Finch sightings are
verified ?  The actual counts ?

So if we can skip over all the PR here - eBird *IS* currently not very
useful for constructing an NYC checklist.  It's currently a very
incomplete record and fundamentally flawed as a result.  I expect it
will get better, and I certainly hope it will get better, but that
doesn't mean that it already qualifies as "good".  It only qualifies
as "good" if you have very low standards indeed.

Phil Jeffrey, D.Phil.

On Mon, Nov 1, 2010 at 8:12 PM, Andrew Farnsworth
 wrote:
> Hi all,
> I want to comment on some points in the checklist thread about eBird
> and lists - the eBird team can speak to issues about how to generate
> lists and give much more detail than I, but I want to discuss comments
> relevant to science and eBird and what is an is not science.  To speak

--

NYSbirds-L List Info:
http://www.NortheastBirding.com/NYSbirdsWELCOME
http://www.NortheastBirding.com/NYSbirdsRULES

ARCHIVES:
1) http://www.mail-archive.com/nysbirds-l@cornell.edu/maillist.html
2) http://birdingonthe.net/mailinglists/NYSB.html
3) http://www.surfbirds.com/birdingmail/Group/NYSBirds-L

Please submit your observations to eBird:
http://ebird.org/content/ebird/

--



Re: [nysbirds-l] (semi-)official NYC checklist ? - SUMMARY

2010-11-01 Thread Andrew Farnsworth
ana, R.,
Ballard, G. and Hooker, G. 2009. Data-intensive Science: A New
Paradigm for Biodiversity Studies. BioScience, 59: 613-620.

Sullivan, B.L., C.L. Wood, M.J. Iliff, R.E. Bonney, D. Fink, and S.
Kelling. 2009. eBird: a citizen-based bird observation network in the
biological sciences. Biological Conservation 142: 2282-2292.

External researchers (not from the Lab)
Berry, R.B., C.W. Benkman, A. Muela, Y. Seminario, and M. Curti. 2010.
Isolation and decline of a population of the Orange-breasted Falcon.
Condor 112(3): 479-489.

Harris, Emma. 2010. Birds flock online: Supercomputer time will help
ornithologists make ecological sense of millions of records of bird
sightings. Nature. Published online 10 August 2010.
(http://www.nature.com/news/2010/100810/full/news.2010.395.html).
doi:10.1038/news.2010.395

McCormack, J.E., A.J. Zellmer, and L.L. Knowles. 2009. Does niche
divergence accompany allopatric divergence in Aphelocoma jays as
predicted under ecological speciation?: insights from tests with niche
models. Evolution 2009. Available online.

Stralberg, D., D. Jongsomjit, C. A. Howell, M. A. Snyder, J. D.
Alexander, J. A. Wiens, and T. L. Root. 2009. Reshuffling of species
with climate disruption: a no-analog future for California birds? PLoS
ONE 4:e6825. doi:10.1371/journal.pone.0006825

Wiens, J.A., D. Stralberg, D. Jongsomjit, C.A. Howell, and M.A.
Snyder. 2009. Niches, models, and climate change: Assessing the
assumptions and uncertainties. Proc. Natl. Acad. Sci. USA
106:19729-19736.

Geoffrey A. Levin and Melissa H. Cragin. 2003. The Role of Information
Science in Gathering Biodiversity and Neuroscience Data. Bulletin of
the American Society for Information Science and Technology 30:1




>
> -- Forwarded message --
> From: Tom Fiore 
> Date: Fri, Oct 29, 2010 at 11:50 PM
> Subject: Re:[nysbirds-l] (semi-)official NYC checklist ? - SUMMARY
> To: nysbirds-L@cornell.edu
>
>
> Hi all,
> That UK birder wanting a decent checklist for birds of New York City
> started something, did he or she not... and thanks to Phil and many
> others, for continuing the thread on this subject.
> Since the post as titled to this list made reference to the
> nycbirdreport.com now-static lists, which are available for a number
> of well-known NYC birding localities, with the most attention having
> been given to Central & Prospect Parks, & Jamaica Bay Wildlife Refuge,
> it is unclear what was meant by the sightings not being tagged. In any
> case the vast majority of sightings in those listings are not
> NYSARC-review species, and were observed by many as well as vetted by
> a number of very experienced birders most familiar with the location
> they were vetting for.  in my "opinionated" opinion those lists and
> that website have not been surpassed by any I've seen for fast and
> accurate dispersal of basic information, for recently-seen 'local'
> birds in NYC.  And as Phil opined, the eBird.org web-based effort is,
> thus far, more full of holes than swiss cheese - and that problem
> isn't shrinking, for those who look at it as any sort of "scientific"
> data set. As pure entertainment that may help some folks, it's fine.
> It ain't science. Sorry, but that is just the way it is set up. If you
> or I can report a bird (or birds) that may or may not have been in a
> particular place at a particular time (and I don't even refer to
> "rare" or uncommon species for any given locality) then it is just
> that, a series of reports... as we can find all around the web. That
> is not science, however. And to make it completely clear I am
> referring to the Cornell-originated website with the suffix org, and
> not to Phil's current version of the ebirdsnyc list, a yahoo-groups
> list which is unrelated to the much "wider" Cornell / eBird efforts.
> The moniker ebirdsnyc also predates the ebird,org by quite some many
> years.
> The checklists prepared for Queens, for the Jamaica Bay Wildlife
> Refuge, & for Prospect Park, and Central Park (each in their most
> recently-revised versions) are all in their own ways quite good at the
> basic info that a checklist should provide & all have been extensively
> vetted by multiple experienced birders for fairly high level of
> accuracy and quality. Kudos to the many who helped to compile them &
> particularly to those who edited them.  There just may be some
> additional checklists that will come to light for specific locations
> within NYC. The two boroughs perhaps in need of at least a basic
> checklist would be Staten Island (Richmond County) and The Bronx, both
> rich birding and ornithological hot-beds over a period of many, many
> years - a century & even more. The borough of Richmond has been
> studied for a very long time and has proven a number of t

Re: [nysbirds-l] (semi-)official NYC checklist ? - SUMMARY

2010-11-01 Thread Andrew Farnsworth
-intensive Science: A New
Paradigm for Biodiversity Studies. BioScience, 59: 613-620.

Sullivan, B.L., C.L. Wood, M.J. Iliff, R.E. Bonney, D. Fink, and S.
Kelling. 2009. eBird: a citizen-based bird observation network in the
biological sciences. Biological Conservation 142: 2282-2292.

External researchers (not from the Lab)
Berry, R.B., C.W. Benkman, A. Muela, Y. Seminario, and M. Curti. 2010.
Isolation and decline of a population of the Orange-breasted Falcon.
Condor 112(3): 479-489.

Harris, Emma. 2010. Birds flock online: Supercomputer time will help
ornithologists make ecological sense of millions of records of bird
sightings. Nature. Published online 10 August 2010.
(http://www.nature.com/news/2010/100810/full/news.2010.395.html).
doi:10.1038/news.2010.395

McCormack, J.E., A.J. Zellmer, and L.L. Knowles. 2009. Does niche
divergence accompany allopatric divergence in Aphelocoma jays as
predicted under ecological speciation?: insights from tests with niche
models. Evolution 2009. Available online.

Stralberg, D., D. Jongsomjit, C. A. Howell, M. A. Snyder, J. D.
Alexander, J. A. Wiens, and T. L. Root. 2009. Reshuffling of species
with climate disruption: a no-analog future for California birds? PLoS
ONE 4:e6825. doi:10.1371/journal.pone.0006825

Wiens, J.A., D. Stralberg, D. Jongsomjit, C.A. Howell, and M.A.
Snyder. 2009. Niches, models, and climate change: Assessing the
assumptions and uncertainties. Proc. Natl. Acad. Sci. USA
106:19729-19736.

Geoffrey A. Levin and Melissa H. Cragin. 2003. The Role of Information
Science in Gathering Biodiversity and Neuroscience Data. Bulletin of
the American Society for Information Science and Technology 30:1





 -- Forwarded message --
 From: Tom Fiore tom...@earthlink.net
 Date: Fri, Oct 29, 2010 at 11:50 PM
 Subject: Re:[nysbirds-l] (semi-)official NYC checklist ? - SUMMARY
 To: nysbirds-L@cornell.edu


 Hi all,
 That UK birder wanting a decent checklist for birds of New York City
 started something, did he or she not... and thanks to Phil and many
 others, for continuing the thread on this subject.
 Since the post as titled to this list made reference to the
 nycbirdreport.com now-static lists, which are available for a number
 of well-known NYC birding localities, with the most attention having
 been given to Central  Prospect Parks,  Jamaica Bay Wildlife Refuge,
 it is unclear what was meant by the sightings not being tagged. In any
 case the vast majority of sightings in those listings are not
 NYSARC-review species, and were observed by many as well as vetted by
 a number of very experienced birders most familiar with the location
 they were vetting for.  in my opinionated opinion those lists and
 that website have not been surpassed by any I've seen for fast and
 accurate dispersal of basic information, for recently-seen 'local'
 birds in NYC.  And as Phil opined, the eBird.org web-based effort is,
 thus far, more full of holes than swiss cheese - and that problem
 isn't shrinking, for those who look at it as any sort of scientific
 data set. As pure entertainment that may help some folks, it's fine.
 It ain't science. Sorry, but that is just the way it is set up. If you
 or I can report a bird (or birds) that may or may not have been in a
 particular place at a particular time (and I don't even refer to
 rare or uncommon species for any given locality) then it is just
 that, a series of reports... as we can find all around the web. That
 is not science, however. And to make it completely clear I am
 referring to the Cornell-originated website with the suffix org, and
 not to Phil's current version of the ebirdsnyc list, a yahoo-groups
 list which is unrelated to the much wider Cornell / eBird efforts.
 The moniker ebirdsnyc also predates the ebird,org by quite some many
 years.
 The checklists prepared for Queens, for the Jamaica Bay Wildlife
 Refuge,  for Prospect Park, and Central Park (each in their most
 recently-revised versions) are all in their own ways quite good at the
 basic info that a checklist should provide  all have been extensively
 vetted by multiple experienced birders for fairly high level of
 accuracy and quality. Kudos to the many who helped to compile them 
 particularly to those who edited them.  There just may be some
 additional checklists that will come to light for specific locations
 within NYC. The two boroughs perhaps in need of at least a basic
 checklist would be Staten Island (Richmond County) and The Bronx, both
 rich birding and ornithological hot-beds over a period of many, many
 years - a century  even more. The borough of Richmond has been
 studied for a very long time and has proven a number of times to have
 the greatest diversity of sites for both breeding and wintering birds
 in NYC over a long period of time, even if the present-day status is
 changed due to massive development. It still retains many habitat
 remnants unique in NYC and some unique in the state.  At a guess, and
 that is all

Re:[nysbirds-l] (semi-)official NYC checklist ? - SUMMARY

2010-10-29 Thread Tom Fiore
Hi all,

That UK birder wanting a decent checklist for birds of New York City  
started something, did he or she not... and thanks to Phil and many  
others, for continuing the thread on this subject.
Since the post as titled to this list made reference to the nycbirdreport.com 
  now-static lists, which are available for a number of well-known NYC  
birding localities, with the most attention having been given to  
Central & Prospect Parks, & Jamaica Bay Wildlife Refuge, it is unclear  
what was meant by the sightings not being tagged. In any case the vast  
majority of sightings in those listings are not NYSARC-review species,  
and were observed by many as well as vetted by a number of very  
experienced birders most familiar with the location they were vetting  
for.  in my "opinionated" opinion those lists and that website have  
not been surpassed by any I've seen for fast and accurate dispersal of  
basic information, for recently-seen 'local' birds in NYC.  And as  
Phil opined, the eBird.org web-based effort is, thus far, more full of  
holes than swiss cheese - and that problem isn't shrinking, for those  
who look at it as any sort of "scientific" data set. As pure  
entertainment that may help some folks, it's fine. It ain't science.  
Sorry, but that is just the way it is set up. If you or I can report a  
bird (or birds) that may or may not have been in a particular place at  
a particular time (and I don't even refer to "rare" or uncommon  
species for any given locality) then it is just that, a series of  
reports... as we can find all around the web. That is not science,  
however. And to make it completely clear I am referring to the Cornell- 
originated website with the suffix org, and not to Phil's current  
version of the ebirdsnyc list, a yahoo-groups list which is unrelated  
to the much "wider" Cornell / eBird efforts. The moniker ebirdsnyc  
also predates the ebird,org by quite some many years.

The checklists prepared for Queens, for the Jamaica Bay Wildlife  
Refuge, & for Prospect Park, and Central Park (each in their most  
recently-revised versions) are all in their own ways quite good at the  
basic info that a checklist should provide & all have been extensively  
vetted by multiple experienced birders for fairly high level of  
accuracy and quality. Kudos to the many who helped to compile them &  
particularly to those who edited them.  There just may be some  
additional checklists that will come to light for specific locations  
within NYC. The two boroughs perhaps in need of at least a basic  
checklist would be Staten Island (Richmond County) and The Bronx, both  
rich birding and ornithological hot-beds over a period of many, many  
years - a century & even more. The borough of Richmond has been  
studied for a very long time and has proven a number of times to have  
the greatest diversity of sites for both breeding and wintering birds  
in NYC over a long period of time, even if the present-day status is  
changed due to massive development. It still retains many habitat  
remnants unique in NYC and some unique in the state.  At a guess, and  
that is all it is, the borough of Queens may hold bragging rights to  
the most species of wild birds to be recorded in NYC, due in great  
part to the many observations made from the Jamaica Bay Wildlife  
Refuge since its creation as well as the extensive shore areas along  
with large tracts of intact forest in several larger wooded parks.  In  
any case each borough has its own unique and special places for birds  
and much more in nature.  In New York City, there is a vast potential  
for nature studies, especially so in all the "other" 4 boroughs but  
amazingly even in busy Manhattan.  A nice resource for Brooklyn  
sightings is the birding blog maintained by Peter Dorosh of Brooklyn/ 
Kings County and often reported to by multiple birders of that  
borough ... just today the blog contains mention of a good sighting  
for there, Black Vulture, along with many other nice birds of the day.  
It gets updated very regularly about all year 'round. For Staten  
Island/Richmond County a good naturalist's resource has been the yahoo- 
group list with public archives, the SINaturaList available in the  
yahoo groups at that exact spelling and updated a lot, especially by  
some of that borough's more active birder-naturalists.  There are also  
bunches of other blogs and such that offer more insights into nature  
in NYC, some that specialize in one area and others quite general in  
the topics covered. In a few years, perhaps every individual will  
simply blog on their own personal take from their "patch"!  There  
might be as much insight in that effort as all of what the ebird.org  
project is attempting... perhaps depending on what one accepts as  
science...

Among my favorite Central Park encounters of all time was from some  
years ago, as I passed the well-known bridge to and from The Ramble,  
at the height of spring 

Re: [nysbirds-l] (semi-)official NYC checklist ? - SUMMARY

2010-10-29 Thread BernaLincoln
To access and peruse all the NYSARC records, listed by species and 
summarized, since its inception, go to: nybirds.org/NYSARC/RecordsSummary.htm

Also, for more detail, a searchable archive of all issues of The Kingbird 
can be accessed through our Web site: nybirds.org

Berna Lincoln
NYS Ornithological Association

--

NYSbirds-L List Info:
http://www.NortheastBirding.com/NYSbirdsWELCOME
http://www.NortheastBirding.com/NYSbirdsRULES

ARCHIVES:
1) http://www.mail-archive.com/nysbirds-l@cornell.edu/maillist.html
2) http://birdingonthe.net/mailinglists/NYSB.html
3) http://www.surfbirds.com/birdingmail/Group/NYSBirds-L

Please submit your observations to eBird:
http://ebird.org/content/ebird/

--


Re:[nysbirds-l] (semi-)official NYC checklist ? - SUMMARY

2010-10-29 Thread Phil Jeffrey
For those of you with an aversion to reading my wordy posts, see:
http://philjeffrey.net/NYC_unofficial_list.html

For the rest of you:
Thanks to the many people that replied, mostly off-list.
There is no official checklist.  The best approximation is the one
appearing in NYC Audubon's NYC birding book, and you can find that
online at: http://www.nycaudubon.org/kids/birds/
and was mentioned in the very first reply to my question by Patrick Santinello.

The online NYState checklist, of lesser use since there's no
distinction between NYC and anywhere else, is at:
http://nybirds.org/Publications/ChecklistNYS.htm
but obviously it's a superset and I'm pretty sure Spruce Grouse
doesn't occur in NYC (for example).

The major problem with the Audubon list is the omission of rarities
such as Broad-billed and Sharp-tailed Sandpipers or Rufous and
Calliope Hummingbirds and the fact that it's difficult to me to know
which rarities they've omitted without wading through NYSARC
proceedings dating back through the Middle Ages.  The Audubon list has
this strange compulsion of alphabetizing within family groups, which
may drive you a little crazy.

Another list that has been cited is the static one at Mike Freeman's
site http://www.nycbirdreport.com but sightings are not tagged so it's
impossible to assess the error level.

One or two mentioned eBirds (not my eBirdsNYC), but Cornell's eBirds
database has more holes than swiss cheese and is not that useful for
coverage.

Lastly there's the Central Park Conservancy bird list, but of course
CPK is not a great place to observe shorebirds, so there are large
gaps in that too.

Ergo, here's a slightly more ordered list, enabled via Ben Cacace,
Marie Winn and the NYC Audubon list.
http://philjeffrey.net/NYC_unofficial_list.html

If your favorite rarity is not on it, email me.  I'll see if I can
find a way to data mine old NYSARC records.

Thanks
Phil Jeffrey

On Thu, Oct 28, 2010 at 5:14 PM, Phil Jeffrey  wrote:
> A UK birder asked me, and I realize I have no idea if there is one, or
> even where to start looking for it.
> Any pointers welcome.
>
> Thanks
> Phil Jeffrey
>



-- 
"If you lie to the compiler, it will get its revenge"
- Henry Spencer

--

NYSbirds-L List Info:
http://www.NortheastBirding.com/NYSbirdsWELCOME
http://www.NortheastBirding.com/NYSbirdsRULES

ARCHIVES:
1) http://www.mail-archive.com/nysbirds-l@cornell.edu/maillist.html
2) http://birdingonthe.net/mailinglists/NYSB.html
3) http://www.surfbirds.com/birdingmail/Group/NYSBirds-L

Please submit your observations to eBird:
http://ebird.org/content/ebird/

--


Re:[nysbirds-l] (semi-)official NYC checklist ? - SUMMARY

2010-10-29 Thread Tom Fiore
Hi all,

That UK birder wanting a decent checklist for birds of New York City  
started something, did he or she not... and thanks to Phil and many  
others, for continuing the thread on this subject.
Since the post as titled to this list made reference to the nycbirdreport.com 
  now-static lists, which are available for a number of well-known NYC  
birding localities, with the most attention having been given to  
Central  Prospect Parks,  Jamaica Bay Wildlife Refuge, it is unclear  
what was meant by the sightings not being tagged. In any case the vast  
majority of sightings in those listings are not NYSARC-review species,  
and were observed by many as well as vetted by a number of very  
experienced birders most familiar with the location they were vetting  
for.  in my opinionated opinion those lists and that website have  
not been surpassed by any I've seen for fast and accurate dispersal of  
basic information, for recently-seen 'local' birds in NYC.  And as  
Phil opined, the eBird.org web-based effort is, thus far, more full of  
holes than swiss cheese - and that problem isn't shrinking, for those  
who look at it as any sort of scientific data set. As pure  
entertainment that may help some folks, it's fine. It ain't science.  
Sorry, but that is just the way it is set up. If you or I can report a  
bird (or birds) that may or may not have been in a particular place at  
a particular time (and I don't even refer to rare or uncommon  
species for any given locality) then it is just that, a series of  
reports... as we can find all around the web. That is not science,  
however. And to make it completely clear I am referring to the Cornell- 
originated website with the suffix org, and not to Phil's current  
version of the ebirdsnyc list, a yahoo-groups list which is unrelated  
to the much wider Cornell / eBird efforts. The moniker ebirdsnyc  
also predates the ebird,org by quite some many years.

The checklists prepared for Queens, for the Jamaica Bay Wildlife  
Refuge,  for Prospect Park, and Central Park (each in their most  
recently-revised versions) are all in their own ways quite good at the  
basic info that a checklist should provide  all have been extensively  
vetted by multiple experienced birders for fairly high level of  
accuracy and quality. Kudos to the many who helped to compile them   
particularly to those who edited them.  There just may be some  
additional checklists that will come to light for specific locations  
within NYC. The two boroughs perhaps in need of at least a basic  
checklist would be Staten Island (Richmond County) and The Bronx, both  
rich birding and ornithological hot-beds over a period of many, many  
years - a century  even more. The borough of Richmond has been  
studied for a very long time and has proven a number of times to have  
the greatest diversity of sites for both breeding and wintering birds  
in NYC over a long period of time, even if the present-day status is  
changed due to massive development. It still retains many habitat  
remnants unique in NYC and some unique in the state.  At a guess, and  
that is all it is, the borough of Queens may hold bragging rights to  
the most species of wild birds to be recorded in NYC, due in great  
part to the many observations made from the Jamaica Bay Wildlife  
Refuge since its creation as well as the extensive shore areas along  
with large tracts of intact forest in several larger wooded parks.  In  
any case each borough has its own unique and special places for birds  
and much more in nature.  In New York City, there is a vast potential  
for nature studies, especially so in all the other 4 boroughs but  
amazingly even in busy Manhattan.  A nice resource for Brooklyn  
sightings is the birding blog maintained by Peter Dorosh of Brooklyn/ 
Kings County and often reported to by multiple birders of that  
borough ... just today the blog contains mention of a good sighting  
for there, Black Vulture, along with many other nice birds of the day.  
It gets updated very regularly about all year 'round. For Staten  
Island/Richmond County a good naturalist's resource has been the yahoo- 
group list with public archives, the SINaturaList available in the  
yahoo groups at that exact spelling and updated a lot, especially by  
some of that borough's more active birder-naturalists.  There are also  
bunches of other blogs and such that offer more insights into nature  
in NYC, some that specialize in one area and others quite general in  
the topics covered. In a few years, perhaps every individual will  
simply blog on their own personal take from their patch!  There  
might be as much insight in that effort as all of what the ebird.org  
project is attempting... perhaps depending on what one accepts as  
science...

Among my favorite Central Park encounters of all time was from some  
years ago, as I passed the well-known bridge to and from The Ramble,  
at the height of spring bird migration. A