commit python-lmfit for openSUSE:Factory
Hello community,
here is the log from the commit of package python-lmfit for openSUSE:Factory
checked in at 2019-04-30 13:00:02
Comparing /work/SRC/openSUSE:Factory/python-lmfit (Old)
and /work/SRC/openSUSE:Factory/.python-lmfit.new.5536 (New)
Package is "python-lmfit"
Tue Apr 30 13:00:02 2019 rev:4 rq:697388 version:0.9.13
Changes:
--- /work/SRC/openSUSE:Factory/python-lmfit/python-lmfit.changes
2019-03-06 15:48:55.144426463 +0100
+++ /work/SRC/openSUSE:Factory/.python-lmfit.new.5536/python-lmfit.changes
2019-04-30 13:00:06.906176234 +0200
@@ -1,0 +2,29 @@
+Wed Apr 24 08:42:15 UTC 2019 - pgaj...@suse.com
+
+- version update to 0.9.13
+ New features:
+Clearer warning message in fit reports when uncertainties should
+ but cannot be estimated, including guesses of which Parameters
+ to examine (#521, #543)
+SplitLorenztianModel and split_lorentzian function (#523)
+HTML representations for Parameter, MinimizerResult, and Model
+ so that they can be printed better with Jupyter (#524, #548)
+support parallelization for differential evolution (#526)
+ Bug fixes:
+delay import of matplotlib (and so, the selection of its backend)
+ as late as possible (#528, #529)
+fix for saving, loading, and reloading ModelResults (#534)
+fix to leastsq to report the best-fit values, not the values tried
+ last (#535, #536)
+fix synchronization of all parameter values on Model.guess() (#539, #542)
+improve deprecation warnings for outdated nan_policy keywords (#540)
+fix for edge case in gformat() (#547)
+ Project managements:
+using pre-commit framework to improve and enforce coding style (#533)
+added code coverage report to github main page
+updated docs, github templates, added several tests.
+dropped support and testing for Python 3.4.
+- deleted patches
+ - lmfit-scipy.patch (upstreamed)
+
+---
Old:
lmfit-0.9.12.tar.gz
lmfit-scipy.patch
New:
lmfit-0.9.13.tar.gz
Other differences:
--
++ python-lmfit.spec ++
--- /var/tmp/diff_new_pack.DR1mc4/_old 2019-04-30 13:00:07.910176010 +0200
+++ /var/tmp/diff_new_pack.DR1mc4/_new 2019-04-30 13:00:07.914176009 +0200
@@ -18,34 +18,33 @@
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
Name: python-lmfit
-Version:0.9.12
+Version:0.9.13
Release:0
Summary:Least-Squares Minimization with Bounds and Constraints
License:MIT AND BSD-3-Clause
Group: Development/Languages/Python
Url:https://lmfit.github.io/lmfit-py/
Source:
https://files.pythonhosted.org/packages/source/l/lmfit/lmfit-%{version}.tar.gz
-Patch0: lmfit-scipy.patch
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
# SECTION test requirements
-BuildRequires: %{python_module asteval}
-BuildRequires: %{python_module numpy}
+BuildRequires: %{python_module asteval >= 0.9.12}
+BuildRequires: %{python_module numpy >= 1.10}
BuildRequires: %{python_module pytest}
-BuildRequires: %{python_module scipy}
-BuildRequires: %{python_module six}
-BuildRequires: %{python_module uncertainties}
+BuildRequires: %{python_module scipy >= 0.19}
+BuildRequires: %{python_module six >= 1.10}
+BuildRequires: %{python_module uncertainties >= 3.0}
# /SECTION
-Requires: python-asteval
-Requires: python-numpy
-Requires: python-scipy
-Requires: python-six
+Requires: python-asteval >= 0.9.12
+Requires: python-numpy >= 1.10
+Requires: python-scipy >= 0.19
+Requires: python-six >= 1.10
Recommends: python-dill
Recommends: python-emcee
Recommends: python-matplotlib
Recommends: python-pandas
-Recommends: python-uncertainties
+Recommends: python-uncertainties >= 3.0
BuildArch: noarch
%python_subpackages
@@ -71,7 +70,6 @@
%prep
%setup -q -n lmfit-%{version}
-%patch0 -p1
sed -i -e '/^#!\//, 1d' lmfit/jsonutils.py
%build
++ lmfit-0.9.12.tar.gz -> lmfit-0.9.13.tar.gz ++
10350 lines of diff (skipped)
commit python-lmfit for openSUSE:Factory
Hello community,
here is the log from the commit of package python-lmfit for openSUSE:Factory
checked in at 2019-03-06 15:48:49
Comparing /work/SRC/openSUSE:Factory/python-lmfit (Old)
and /work/SRC/openSUSE:Factory/.python-lmfit.new.28833 (New)
Package is "python-lmfit"
Wed Mar 6 15:48:49 2019 rev:3 rq:681799 version:0.9.12
Changes:
--- /work/SRC/openSUSE:Factory/python-lmfit/python-lmfit.changes
2019-01-21 11:01:54.503154573 +0100
+++ /work/SRC/openSUSE:Factory/.python-lmfit.new.28833/python-lmfit.changes
2019-03-06 15:48:55.144426463 +0100
@@ -1,0 +2,5 @@
+Tue Mar 5 14:57:02 UTC 2019 - Todd R
+
+- Fix spurious unit test errors.
+
+---
Other differences:
--
++ python-lmfit.spec ++
--- /var/tmp/diff_new_pack.GyY9af/_old 2019-03-06 15:48:55.964426246 +0100
+++ /var/tmp/diff_new_pack.GyY9af/_new 2019-03-06 15:48:55.968426245 +0100
@@ -82,7 +82,8 @@
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
-%python_expand PYTHONPATH=%{buildroot}%{$python_sitelib}
py.test-%{$python_bin_suffix} -v
+# We don't care about speed, and test_itercb is architecture-specific
+%python_expand PYTHONPATH=%{buildroot}%{$python_sitelib}
py.test-%{$python_bin_suffix} -v -k 'not speed and not test_itercb'
%files %{python_files}
%doc README.rst THANKS.txt
commit python-lmfit for openSUSE:Factory
Hello community,
here is the log from the commit of package python-lmfit for openSUSE:Factory
checked in at 2019-01-21 10:59:51
Comparing /work/SRC/openSUSE:Factory/python-lmfit (Old)
and /work/SRC/openSUSE:Factory/.python-lmfit.new.28833 (New)
Package is "python-lmfit"
Mon Jan 21 10:59:51 2019 rev:2 rq:666943 version:0.9.12
Changes:
--- /work/SRC/openSUSE:Factory/python-lmfit/python-lmfit.changes
2018-06-22 13:30:24.401687712 +0200
+++ /work/SRC/openSUSE:Factory/.python-lmfit.new.28833/python-lmfit.changes
2019-01-21 11:01:54.503154573 +0100
@@ -1,0 +2,14 @@
+Fri Jan 18 10:24:44 UTC 2019 - Tomáš Chvátal
+
+- Apply patch to fix build with new scipy:
+ * lmfit-scipy.patch
+
+---
+Fri Jan 18 10:19:27 UTC 2019 - Tomáš Chvátal
+
+- Update to 0.9.12:
+ * make exceptions explicit
+ * use inspect.getfullargspec for Python3
+ * test-suite: use pytest features, improve coverage, fix mistakes
+
+---
Old:
lmfit-0.9.10.tar.gz
New:
lmfit-0.9.12.tar.gz
lmfit-scipy.patch
Other differences:
--
++ python-lmfit.spec ++
--- /var/tmp/diff_new_pack.b9KvLj/_old 2019-01-21 11:01:58.035150017 +0100
+++ /var/tmp/diff_new_pack.b9KvLj/_new 2019-01-21 11:01:58.039150013 +0100
@@ -1,7 +1,7 @@
#
# spec file for package python-lmfit
#
-# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -12,27 +12,27 @@
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
-# Please submit bugfixes or comments via http://bugs.opensuse.org/
+# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
Name: python-lmfit
-Version:0.9.10
+Version:0.9.12
Release:0
Summary:Least-Squares Minimization with Bounds and Constraints
-License:MIT and BSD-3-Clause
+License:MIT AND BSD-3-Clause
Group: Development/Languages/Python
Url:https://lmfit.github.io/lmfit-py/
Source:
https://files.pythonhosted.org/packages/source/l/lmfit/lmfit-%{version}.tar.gz
-BuildRequires: %{python_module devel}
+Patch0: lmfit-scipy.patch
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
# SECTION test requirements
BuildRequires: %{python_module asteval}
-BuildRequires: %{python_module nose}
BuildRequires: %{python_module numpy}
+BuildRequires: %{python_module pytest}
BuildRequires: %{python_module scipy}
BuildRequires: %{python_module six}
BuildRequires: %{python_module uncertainties}
@@ -71,6 +71,7 @@
%prep
%setup -q -n lmfit-%{version}
+%patch0 -p1
sed -i -e '/^#!\//, 1d' lmfit/jsonutils.py
%build
@@ -81,11 +82,7 @@
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
-pushd tests
-%{python_expand export PYTHONPATH=%{buildroot}%{$python_sitelib}
-nosetests-%{$python_bin_suffix}
-}
-popd
+%python_expand PYTHONPATH=%{buildroot}%{$python_sitelib}
py.test-%{$python_bin_suffix} -v
%files %{python_files}
%doc README.rst THANKS.txt
++ lmfit-0.9.10.tar.gz -> lmfit-0.9.12.tar.gz ++
10297 lines of diff (skipped)
++ lmfit-scipy.patch ++
>From 23d6975448825291c8acb725c8fad360aadbe9a3 Mon Sep 17 00:00:00 2001
From: reneeotten
Date: Thu, 10 Jan 2019 11:49:06 -0500
Subject: [PATCH] TST: fix nan_policy_test for differential_evolution
In SciPy version 1.2 this gives a RuntimeError instead of ValueError.
---
tests/test_nose.py | 11 +--
1 file changed, 9 insertions(+), 2 deletions(-)
diff --git a/tests/test_nose.py b/tests/test_nose.py
index 25ba4b39..5e2ef1c1 100644
--- a/tests/test_nose.py
+++ b/tests/test_nose.py
@@ -5,6 +5,7 @@
from numpy.testing import (assert_, assert_allclose, assert_almost_equal,
assert_equal, dec)
import pytest
+from scipy.version import version as scipy_version
from uncertainties import ufloat
from lmfit import Minimizer, Parameters, minimize
@@ -394,9 +395,15 @@ def test_nan_policy(self):
# the data returned by userfcn
self.data[0] = np.nan
+major, minor, _micro = scipy_version.split('.', 2)
for method in SCALAR_METHODS:
-pytest.raises(ValueError, self.mini.scalar_minimize,
- SCALAR_METHODS[method])
+if (method == 'differential_evolution' and int
