Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-22 Thread Nabil Ghodbane
Hi
Thanks for the reply. Did someone else manage to get this approach based on
the superbuilder machinery on a Centos 7 node? As I wrote it previously the
installation works nicely on Ubuntu but fails on CentOS.
I will appréciateur any feedback about it.
Thanks

On Tuesday, February 21, 2017, Ben Boeckel  wrote:

> On Tue, Feb 21, 2017 at 18:48:37 +0100, Nabil Ghodbane wrote:
> > fine, I started a parallel build on another node using Python 2.7.12, it
> > seems to be compiling so far...
> > As I wrote it previously, the first compilation based on Python 2.7.11
> > shipped by the superbuilder fails  with the following message:
> > do you know by chance whether I do have to switch on/off some flag ?
>
> Hmm. This looks like a problem with ParaView itself. What HDF5 settings
> are you using in the superbuild and what HDF5-related settings are set
> in `superbuild/paraview/build/CMakeCache.txt`.
>
> --Ben
>


-- 
Nabil Ghodbane (PhD. Habil.)
Mailto: nabil.ghodb...@gmail.com
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-22 Thread Ben Boeckel
On Wed, Feb 22, 2017 at 09:37:47 +0100, Nabil Ghodbane wrote:
> - I am requesting USE_SYSTEM_hdf5 = OFF
> but looking as you suggested in superbuild/paraview/build/CMakeCache.txt, I
> can see that VTK_USE_SYSTEM_HDF5:BOOL=TRUE
> Shouldn't this be FALSE ?

>From ParaView's point of view, it is using a "system" HDF5, but it is
being provided by the superbuild itself. It looks like it is finding the
superbuild's HDF5, so something else is going wrong here :( .

> Find attached, the CMakeCache.txt, How can I workaround this issue?

It will need investigation. I'll try and get to it this week.

> Find below some additional informations:
> -  it works on Ubuntu (I tried my own Python), but I need to stick to an
> older glibc :(
> - on a Debian node, it fails if I use my local Python installation, while
> trying to compile numpy: "/usr/lib/python2.7/distutils/sysconfig.py"

More information is needed to help with this.

--Ben
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Nabil Ghodbane
Hi,
fine, I started a parallel build on another node using Python 2.7.12, it
seems to be compiling so far...
As I wrote it previously, the first compilation based on Python 2.7.11
shipped by the superbuilder fails  with the following message:
do you know by chance whether I do have to switch on/off some flag ?

Below, the error messages...
thanks for your valuable help


-- Found PythonInterp: /root//build/install/bin/python2.7 (found version
"2.7.11")
CMake Error at CommandLineExecutables/CMakeLists.txt:77 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


CMake Error at CommandLineExecutables/CMakeLists.txt:82 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


CMake Error at CommandLineExecutables/CMakeLists.txt:77 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


CMake Error at CommandLineExecutables/CMakeLists.txt:82 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


-- Configuring incomplete, errors occurred!

Nabil Ghodbane (Ph. D. Habil*.*)
Phone: +33 6 34 42 33 43
Mailto: nabil.ghodb...@gmail.com


On Tue, Feb 21, 2017 at 6:38 PM, Ben Boeckel 
wrote:

> On Tue, Feb 21, 2017 at 17:57:37 +0100, Nabil Ghodbane wrote:
> > many thanks for the prompt reply. I should have hit the toggle option :).
>
> It's fine, that bug is elusive and a pain to deal with.
>
> > No i did not give it a try yet. I will try it and send feedback (I am
> using
> > miniconda)
> > Does this mean that using non embedded python is still experimental ?
>
> Using a system Python is fine, it's just that the one in the superbuild
> hasn't been bumped.
>
> --Ben
>
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Ben Boeckel
On Tue, Feb 21, 2017 at 17:57:37 +0100, Nabil Ghodbane wrote:
> many thanks for the prompt reply. I should have hit the toggle option :).

It's fine, that bug is elusive and a pain to deal with.

> No i did not give it a try yet. I will try it and send feedback (I am using
> miniconda)
> Does this mean that using non embedded python is still experimental ?

Using a system Python is fine, it's just that the one in the superbuild
hasn't been bumped.

--Ben
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Nabil Ghodbane
Hi,
did by chance someone hit this additional issue about missing hdf5 target.
I checked that the super build script managed to successfully download the
archive: hdf5-1.8.13.tar.gz
but it seems, it fails
Do I have to switch some additional flag, or is this some issue?
thanks


-- Found PythonInterp: /root//build/install/bin/python2.7 (found version
"2.7.11")
CMake Error at CommandLineExecutables/CMakeLists.txt:77 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


CMake Error at CommandLineExecutables/CMakeLists.txt:82 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


CMake Error at CommandLineExecutables/CMakeLists.txt:77 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


CMake Error at CommandLineExecutables/CMakeLists.txt:82 (get_property):
  get_property could not find TARGET hdf5.  Perhaps it has not yet been
  created.


-- Configuring incomplete, errors occurred!


Nabil Ghodbane (Ph. D. Habil*.*)
Phone: +33 6 34 42 33 43
Mailto: nabil.ghodb...@gmail.com


On Tue, Feb 21, 2017 at 5:57 PM, Nabil Ghodbane 
wrote:

> hi Ben,
> many thanks for the prompt reply. I should have hit the toggle option :).
> No i did not give it a try yet. I will try it and send feedback (I am using
> miniconda)
> Does this mean that using non embedded python is still experimental ?
> thanks
>
> Nabil Ghodbane (Ph. D. Habil*.*)
> Phone: +33 6 34 42 33 43 <06%2034%2042%2033%2043>
> Mailto: nabil.ghodb...@gmail.com
>
>
> On Tue, Feb 21, 2017 at 4:55 PM, Ben Boeckel 
> wrote:
>
>> > > On Tue, Feb 21, 2017 at 9:25 AM, Nabil Ghodbane
>> > >  wrote:
>> > > > OK many thanks,; I am trying to use the Superbuild now.
>> > > > I can see that it is downloading Python 2.7.11. Is there a
>> particular
>> > > reason
>> > > > to use this version instead of the 2.7.12?
>>
>> Haven't gotten around to updating to 2.7.12 (we're behind in updating
>> dependencies).
>>
>> On Tue, Feb 21, 2017 at 16:18:48 +0100, Nabil Ghodbane wrote:
>> > ok thanks for the hint. I obviously missed this point. I will try again.
>> > I tried with the Python which is downloaded by the Paraview builder and
>> i
>> > am hiting a new issue about libQtLucene.so
>> > Is this a known issue ?
>>
>> There's a flag qt4_WORK_AROUND_BROKEN_ASSISTANT_BUILD you can set (it's
>> marked as advanced, so it is hidden by default). Details are here if
>> you're interested:
>>
>> https://gitlab.kitware.com/paraview/common-superbuild/blob/
>> master/projects/qt4.common.cmake#L5
>>
>> --Ben
>>
>
>
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Nabil Ghodbane
hi Ben,
many thanks for the prompt reply. I should have hit the toggle option :).
No i did not give it a try yet. I will try it and send feedback (I am using
miniconda)
Does this mean that using non embedded python is still experimental ?
thanks

Nabil Ghodbane (Ph. D. Habil*.*)
Phone: +33 6 34 42 33 43
Mailto: nabil.ghodb...@gmail.com


On Tue, Feb 21, 2017 at 4:55 PM, Ben Boeckel 
wrote:

> > > On Tue, Feb 21, 2017 at 9:25 AM, Nabil Ghodbane
> > >  wrote:
> > > > OK many thanks,; I am trying to use the Superbuild now.
> > > > I can see that it is downloading Python 2.7.11. Is there a particular
> > > reason
> > > > to use this version instead of the 2.7.12?
>
> Haven't gotten around to updating to 2.7.12 (we're behind in updating
> dependencies).
>
> On Tue, Feb 21, 2017 at 16:18:48 +0100, Nabil Ghodbane wrote:
> > ok thanks for the hint. I obviously missed this point. I will try again.
> > I tried with the Python which is downloaded by the Paraview builder and i
> > am hiting a new issue about libQtLucene.so
> > Is this a known issue ?
>
> There's a flag qt4_WORK_AROUND_BROKEN_ASSISTANT_BUILD you can set (it's
> marked as advanced, so it is hidden by default). Details are here if
> you're interested:
>
> https://gitlab.kitware.com/paraview/common-superbuild/
> blob/master/projects/qt4.common.cmake#L5
>
> --Ben
>
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Ben Boeckel
> > On Tue, Feb 21, 2017 at 9:25 AM, Nabil Ghodbane
> >  wrote:
> > > OK many thanks,; I am trying to use the Superbuild now.
> > > I can see that it is downloading Python 2.7.11. Is there a particular
> > reason
> > > to use this version instead of the 2.7.12?

Haven't gotten around to updating to 2.7.12 (we're behind in updating
dependencies).

On Tue, Feb 21, 2017 at 16:18:48 +0100, Nabil Ghodbane wrote:
> ok thanks for the hint. I obviously missed this point. I will try again.
> I tried with the Python which is downloaded by the Paraview builder and i
> am hiting a new issue about libQtLucene.so
> Is this a known issue ?

There's a flag qt4_WORK_AROUND_BROKEN_ASSISTANT_BUILD you can set (it's
marked as advanced, so it is hidden by default). Details are here if
you're interested:


https://gitlab.kitware.com/paraview/common-superbuild/blob/master/projects/qt4.common.cmake#L5

--Ben
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Nabil Ghodbane
ok thanks for the hint. I obviously missed this point. I will try again.
I tried with the Python which is downloaded by the Paraview builder and i
am hiting a new issue about libQtLucene.so
Is this a known issue ?
Here are my settings:
gcc version 4.8.5 20150623 (Red Hat 4.8.5-4) (GCC)
cat /etc/redhat-release
CentOS Linux release 7.2.1511 (Core)

ccmake flags:
ENABLE_qt4   ON
USE_SYSTEM_qt4   OFF
Note, that I can see a compilation failure with the following error message:

the compilation fails with:
/usr/bin/ld: warning: libQtCLucene.so.4, needed by
/root/postlabs/build/superbuild/qt4/build/lib/libQtHelp.so, not found (try
using -rpath or -rpath-link)
/root/postlabs/build/superbuild/qt4/build/lib/libQtHelp.so: undefined
reference to `QCLuceneIndexWriter::~QCLuceneIndexWriter()'
collect2: error: ld returned 1 exit status
gmake[7]: *** [../../../../bin/assistant] Error 1
gmake[6]: *** [sub-assistant-make_default-ordered] Error 2
gmake[5]: *** [sub-tools-make_default-ordered] Error 2
gmake[4]: *** [sub-assistant-make_default-ordered] Error 2
gmake[3]: *** [sub-tools-make_default-ordered] Error 2
CMake Error at /root/postlabs/build/superbuild/sb-qt4-build.cmake:43
(message):


Nabil Ghodbane (Ph. D. Habil*.*)
Phone: +33 6 34 42 33 43
Mailto: nabil.ghodb...@gmail.com


On Tue, Feb 21, 2017 at 4:07 PM, Utkarsh Ayachit <
utkarsh.ayac...@kitware.com> wrote:

> On Tue, Feb 21, 2017 at 9:25 AM, Nabil Ghodbane
>  wrote:
> > OK many thanks,; I am trying to use the Superbuild now.
> > I can see that it is downloading Python 2.7.11. Is there a particular
> reason
> > to use this version instead of the 2.7.12?
>
> You can change the superbuild to use system Python i.e Python on your
> system. See docs here
> (https://gitlab.kitware.com/paraview/paraview-superbuild)
> Setting CMake variable USE_SYSTEM_python to ON will use whatever is
> instralled on your system.
>
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Utkarsh Ayachit
On Tue, Feb 21, 2017 at 9:25 AM, Nabil Ghodbane
 wrote:
> OK many thanks,; I am trying to use the Superbuild now.
> I can see that it is downloading Python 2.7.11. Is there a particular reason
> to use this version instead of the 2.7.12?

You can change the superbuild to use system Python i.e Python on your
system. See docs here
(https://gitlab.kitware.com/paraview/paraview-superbuild)
Setting CMake variable USE_SYSTEM_python to ON will use whatever is
instralled on your system.
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Nabil Ghodbane
OK many thanks,; I am trying to use the Superbuild now.
I can see that it is downloading Python 2.7.11. Is there a particular
reason to use this version instead of the 2.7.12?
And how can I switch to the latest stable release ?
Or is this against the super build approach ?
apologize if my question is non sens

thanks.


Nabil Ghodbane (Ph. D. Habil*.*)
Phone: +33 6 34 42 33 43
Mailto: nabil.ghodb...@gmail.com


On Tue, Feb 21, 2017 at 2:56 PM, Ken Martin  wrote:

> You need OpenGL version 3.2, try updating mesa to version 12 or later.
> (11.2 should work also if you are not using OSMesa)
>
> Thanks
> Ken
>
> On Tue, Feb 21, 2017 at 8:39 AM, Nabil Ghodbane 
> wrote:
>
>> dear experts,
>> I am trying to compile Paraview 5.2 with gcc 4.8 + Qt 4.8 + VTK 5.10 +
>> Python 2.7 (available with Miniconda) on a CentOS 7 machine.
>>
>> it compiles well, but I fail to run the Paraview; Paraview starts, but
>> when I try to open a file, I get:
>>
>> ERROR: In 
>> /root/ParaView-v5.2.0/VTK/Rendering/OpenGL2/vtkOpenGLRenderWindow.cxx,
>> line 641
>> vtkXOpenGLRenderWindow (0x1b85d60): GL version 2.1 with the gpu_shader4
>> extension is not supported by your graphics driver but is required for the
>> new OpenGL rendering backend. Please update your OpenGL driver. If you are
>> using Mesa please make sure you have version 10.6.5 or later and make sure
>> your driver in Mesa supports OpenGL 3.2.
>>
>> could some expert either point me to some standard approach, I need to
>> use, or point me to the relevant cmake flags to set?
>> thanks for your valuable help
>>
>>
>> Nabil Ghodbane (Ph. D. Habil*.*)
>> Phone: +33 6 34 42 33 43 <+33%206%2034%2042%2033%2043>
>> Mailto: nabil.ghodb...@gmail.com
>>
>>
>> ___
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>>
>>
>
>
> --
> Ken Martin PhD
> Chairman & CFO
> Kitware Inc.
> 28 Corporate Drive
> Clifton Park NY 12065
> 518 371 3971
>
> This communication, including all attachments, contains confidential and
> legally privileged information, and it is intended only for the use of the
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> action taken in reliance on it is prohibited and may be unlawful. If you
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> destroy the original message.  Thank you.
>
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Ken Martin
You need OpenGL version 3.2, try updating mesa to version 12 or later.
(11.2 should work also if you are not using OSMesa)

Thanks
Ken

On Tue, Feb 21, 2017 at 8:39 AM, Nabil Ghodbane 
wrote:

> dear experts,
> I am trying to compile Paraview 5.2 with gcc 4.8 + Qt 4.8 + VTK 5.10 +
> Python 2.7 (available with Miniconda) on a CentOS 7 machine.
>
> it compiles well, but I fail to run the Paraview; Paraview starts, but
> when I try to open a file, I get:
>
> ERROR: In 
> /root/ParaView-v5.2.0/VTK/Rendering/OpenGL2/vtkOpenGLRenderWindow.cxx,
> line 641
> vtkXOpenGLRenderWindow (0x1b85d60): GL version 2.1 with the gpu_shader4
> extension is not supported by your graphics driver but is required for the
> new OpenGL rendering backend. Please update your OpenGL driver. If you are
> using Mesa please make sure you have version 10.6.5 or later and make sure
> your driver in Mesa supports OpenGL 3.2.
>
> could some expert either point me to some standard approach, I need to
> use, or point me to the relevant cmake flags to set?
> thanks for your valuable help
>
>
> Nabil Ghodbane (Ph. D. Habil*.*)
> Phone: +33 6 34 42 33 43 <+33%206%2034%2042%2033%2043>
> Mailto: nabil.ghodb...@gmail.com
>
>
> ___
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-- 
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Chairman & CFO
Kitware Inc.
28 Corporate Drive
Clifton Park NY 12065
518 371 3971

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addressee.  Access to this email by anyone else is unauthorized. If you are
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action taken in reliance on it is prohibited and may be unlawful. If you
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Re: [Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Nabil Ghodbane
In additon to my previous message, if I run Vagrind, I get:
ERROR: In /root/ParaView-v5.2.0/VTK/Rendering/OpenGL2/vtkShaderProgram.cxx,
line 395
vtkShaderProgram (0x434d1f0): 0:39(12): error: extension
`GL_EXT_gpu_shader4' unsupported in fragment shader


Nabil Ghodbane (Ph. D. Habil*.*)
Phone: +33 6 34 42 33 43
Mailto: nabil.ghodb...@gmail.com


On Tue, Feb 21, 2017 at 2:39 PM, Nabil Ghodbane 
wrote:

> dear experts,
> I am trying to compile Paraview 5.2 with gcc 4.8 + Qt 4.8 + VTK 5.10 +
> Python 2.7 (available with Miniconda) on a CentOS 7 machine.
>
> it compiles well, but I fail to run the Paraview; Paraview starts, but
> when I try to open a file, I get:
>
> ERROR: In 
> /root/ParaView-v5.2.0/VTK/Rendering/OpenGL2/vtkOpenGLRenderWindow.cxx,
> line 641
> vtkXOpenGLRenderWindow (0x1b85d60): GL version 2.1 with the gpu_shader4
> extension is not supported by your graphics driver but is required for the
> new OpenGL rendering backend. Please update your OpenGL driver. If you are
> using Mesa please make sure you have version 10.6.5 or later and make sure
> your driver in Mesa supports OpenGL 3.2.
>
> could some expert either point me to some standard approach, I need to
> use, or point me to the relevant cmake flags to set?
> thanks for your valuable help
>
>
> Nabil Ghodbane (Ph. D. Habil*.*)
> Phone: +33 6 34 42 33 43 <06%2034%2042%2033%2043>
> Mailto: nabil.ghodb...@gmail.com
>
>
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[Paraview] Compiling Paraview 5.2 GCC 4.8 vtkOpenGLRenderWindow.cxx, line 641

2017-02-21 Thread Nabil Ghodbane
dear experts,
I am trying to compile Paraview 5.2 with gcc 4.8 + Qt 4.8 + VTK 5.10 +
Python 2.7 (available with Miniconda) on a CentOS 7 machine.

it compiles well, but I fail to run the Paraview; Paraview starts, but when
I try to open a file, I get:

ERROR: In
/root/ParaView-v5.2.0/VTK/Rendering/OpenGL2/vtkOpenGLRenderWindow.cxx, line
641
vtkXOpenGLRenderWindow (0x1b85d60): GL version 2.1 with the gpu_shader4
extension is not supported by your graphics driver but is required for the
new OpenGL rendering backend. Please update your OpenGL driver. If you are
using Mesa please make sure you have version 10.6.5 or later and make sure
your driver in Mesa supports OpenGL 3.2.

could some expert either point me to some standard approach, I need to use,
or point me to the relevant cmake flags to set?
thanks for your valuable help


Nabil Ghodbane (Ph. D. Habil*.*)
Phone: +33 6 34 42 33 43
Mailto: nabil.ghodb...@gmail.com
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