Helmut, Stan, lists,

(*1)*  I agree. The structural hierarchy shown in Figure 1 is both
*compositional* and *subsumptive*.  "Compositional" can mean either
reductive or reductionistic (top-down) or constructive or synthetic
(bottom-up), and "subsumptive" can mean emergent (bottom-up) or
supervenient (top-down). It may well be that these various names mean
little unless their associated *mechanisms *of *organization *are specified*,
*of which there are almost infinite number, just as there are almost
infinite number of organizations (both as types and as tokens) in the
Universe.


         *Societies* (Languages, sciences, technologies, arts, religions;
SOCIOLOGY)                             ^
                |
           * Brains* (Self-replication with variations, symbolic;
PSYCHOLOGY)
                ^
                |
            *Cells* (Life, or the highly condensed form of information [3];
 BIOLOGY)
                ^
                |
        *Molecules* (Catalysis of chemical reactions;  CHEMISTRY)
                ^
                |
           *Atoms*  (Crystals; PHYSICS)

Figure 1. Five levels of material ORGANIZATION with associated EMERGENT
properties.
                The bottom-up direction = *COMPOSITIONAL HIERARCHY*
                The top-down direction  = *SUBSUMPTION HIERARCHY *[1] (?)
Reproduced from                       [biosemiotics:8854].


(*2*) I think the type-token distinction applies to each level of Figure
1.  For example, the atom is a type and the hydrogen, oxygen, nitrogen etc.
atoms are tokens.  The society is a type, but the American society, the
Nigerian society, the Korean society, etc. are tokens.

(*3*)  Again, I would like to emphasize that Figure 1 embodies the
'principle of the emergence-invariance complementarity'  first discussed in
the PEIRCE-L list on 9/1/2015.  The principle of ORGANIZATION (PO) (i.e.,
the material arrangement in space and time driven by free energy
dissipation) applies to atoms to molecules to cells to brains to the
cosmos.  It seems to me that the principle of organization is consistent
with Peircean *synechism*.  Here Organization may be viewed as a type
 which contains many tokens, each distinguished by individual mechanisms of
organization (perhaps this is what Helmut meant above ?):

(i) Atoms = organized systems of electrons, protons and neutrons connected
by strong, weak, and electromagnetic forces,
(ii) Molecules = organized systems of atoms connected by chemical bonds,
(iii) Cells = organized systems of molecules interacting through shape
complementarity [1],
(iv) Brains = organized systems of neurons and other cells through
intercellular interactions mediated by electromagnetic and concentration
waves, and
(v) Societies = organized systems of individuals interacting through
linguistic (e.g., sound waves), visual (i.e., elecromagnetic waves), and
tactile communications.

(*4*) Figure 1 provides fairly comprehensive examples of DISCONTINUITIES in
the Universe each characterized by a different set of EMERGENT PROPERTIES
engendered by unique *mechanisms* of organization.  Peirce discussed
CONTINUITY under the rubric of SYNECHISM.  I am not a Peirce scholar to
know whether or not Peirce also discussed DISCONTINUITY  in his writings
and, if so, whether or not he gave any name to DISCONTINUITY as he did for
CONTINUITY ?

(*5*)   I suggest that  semiosis, e.g, the *irreducibly triadic process* of
transferring meaning from an utterer to a hearer mediated by a sign, is a
form of organization, i.e., a form of organized processes. Since
irreducible triadic processes can occur in atomic systems as they can in
molecular systems (e.g., the Belousov-Zhabotinsky reaction), it may be
justified to conclude that semiosis is another *scale-invariant *(i.e.,
regardless of scale) *universal principle* applicable to the structural
hierarchy shown in Figure 1.

(*6*) If there is a *scale-invariant semiosis *(as indicated in (5)), there
must be "*scale-dependent semiosis*" as well, according to the Yin-Yang
doctrine of the Daoist philosophy and the complementarity principle of Bohr
[2] as generalized in the form of complementarism in [3]. If this
conjecture is true,

*"The structural hierarchy shown in Figure 1 embodies both
                  *(090615-1)
*the scale-invariant and the scale-dependent semioses." *

All the best.

Sung



References:
    [1]  Ji, S. and Ciobanu, G. (2003).  Conformon-driven biopolymer shape
changes in cell modeling. *BioSystems *70:165-181.
   [2] Plotnitsky, A. (2003).  Niel Bohr and Complementarity: An
Introduction.  Springer, New York.

   [3] Ji, S. (2004).  Semiotics of Life: A Unified Theory of Molecular
Machines, Living Cells, the  Mind, Peircean Signs, and the Universe based
on the Principle of Information-Energy  Complementarity.  *Reports,  the
Research Group on Mathematical Linguistic *(Martin-Vide, C., ed.), Rovira i
Virgili University, Tarragona, Spain, pp. 1-183.  PDF at
http://www.cnformon.net under Publciaitons > Proceedings &Abstracts.



On Sun, Sep 6, 2015 at 2:06 PM, Helmut Raulien <h.raul...@gmx.de> wrote:

> Stan, Sung, lists,
> Stan, is it ok, to say:
> -Subsumptive or specification hierarchy is about types, or intensions of
> terms/concepts,
> -Compositional or scale hierarchy is about tokens, or sets of same tokens,
> or subsets of extensions of terms/concepts,
> -Subsumptive hierarchy requires (or is the product of) a subsumer (such as
> Linne), who looks at (or has inquired, or merely guesses) the history and
> ancestry of the subsystems,
> -Compositional hierarchy requires (or is the product of) an observer who
> looks only at the momentary situation of the subsystems?
>
> Sung, in this case, your hierarchy "atoms, molecules, cells, brains,
> societies" can be both kinds of hierarchies (and before I hadnt thought
> that this was possible), but eg. the subsystem "molecules" in one case is
> the type, and in the other case is the set of tokens, that are parts of the
> respective cell that belongs to the set of "cells", that are parts of the
> respective brain, and so on.
>
> Best,
> Helmut
>
>  "Stanley N Salthe" <ssal...@binghamton.edu> wrote:
>
> Sung -- Yes, in this case either interpretation is possible.  But the
> consequences of each choice are quite different, each representing a
> different discourse.
>
> STAN
>
> On Sat, Sep 5, 2015 at 6:11 PM, Sungchul Ji <s...@rci.rutgers.edu> wrote:
>>
>> Stan, lists,
>>
>> Figure 1 seems to represent your 'scale hierarchy' (viewed from bottom
>> up), since atoms are smaller than molecules which are smaller than cells
>> which are smaller than brains which are smaller than societies [1].
>>
>> Can we also say that Figure 1 represents a "specification" hierarchy [1]
>> as well in the sense that
>>
>> "Physical laws constrain chemistry, chemical laws constrain biology,
>> biological          (090515-1)
>> laws constrain psychology, and psychological laws constrain social
>> behaviors."
>>
>>
>> I think the term "supervenience" may apply here as well --
>> "supervenience" as defined in [2]:
>>
>> "A set of properties *A* supervenes upon another set *B* just in case no
>> two things can differ with respect to *A*-properties without also
>> differing with respect to their *B*-properties."
>>
>> "Donald Davidson played a key role in bringing the idea to center stage.
>> He introduced the term ‘supervenience’ into contemporary philosophy of mind
>> in the following passage:
>>
>> [M]ental characteristics are in some sense dependent, or supervenient, on
>> physical characteristics. Such supervenience might be taken to mean that
>> there cannot be two events alike in all physical respects but differing in
>> some mental respect, or that an object cannot alter in some mental respect
>> without altering in some physical respect (1970, 214)."
>>
>>
>> Employing the concept of supervenience, Figure 1 may be described
>> alternatively thus:
>>
>> "Sociology is supervenient on psychology which is supervenient
>> (090515-2)
>> on biology which is supervenient on chemistry which is supervenient
>> on physics."
>>
>>
>>
>>                                       *Societies* (Languages, sciences,
>> technologies, arts, religions;
>>                                                              SOCIOLOGY)
>>
>>                                             ^
>>                                             |
>>                                       * Brains* (Self-replication with
>> variations, symbolic;
>>                                                               PSYCHOLOGY)
>>                                              ^
>>                                              |
>>                                          *Cells* (Life, or the highly
>> condensed form of information [3];
>>                                                                BIOLOGY)
>>                                              ^
>>                                              |
>>                                       *Molecules* (Catalysis of chemical
>> reactions;
>>                                                                CHEMISTRY)
>>                                              ^
>>                                              |
>>                                         *Atoms*  (Crystals;
>>                                                                 PHYSICS)
>>
>> Figure 1.  Five levels of material ORGANIZATION with associated EMERGENT
>> properties.
>>                 The bottom-up direction = *COMPOSITIONAL HIERARCHY*
>>                 The top-down direction  = *SUPSUMPTION HIERARCHY *[1] (?)
>>
>>
>> If the logic behind the above considerations is sound,  we may conclude
>> that
>>
>> "Figure 1 embodies both the *scale* and *specification* heirarchies
>>         (090515-3)
>> of Salthe."
>>
>> "The emergence of new properties may required both scale and
>>    (090515-4)
>> specification hierarchies."
>>
>>
>> "When A *emerges* from B in a hierarchy, A can be said to be
>>        (090515-5)
>> *supervenient* on B."
>>
>> All the best.
>>
>> Sung
>>
>> References:
>>    [1] Salthe, S. (XXXX). Where Science Meets Philosophy. *Axiomathes*
>> *22*:355-383.
>>    [2] Supervenience.  http://plato.stanford.edu/entries/supervenience/
>>
>> On Sat, Sep 5, 2015 at 9:31 AM, Stanley N Salthe <ssal...@binghamton.edu>
>> wrote:
>>>
>>> Sung -- It's OK as a compositional hierarchy
>>>
>>> STAN
>>>
>>> On Fri, Sep 4, 2015 at 8:03 PM, Sungchul Ji <s...@rci.rutgers.edu>
>>> wrote:
>>>>
>>>> Helmut, Stan, and lists,
>>>>
>>>> Applying the so-called "the principle of the *emergence-invariance
>>>>  complementarity*" discussed on these lists recently [1, 2] to the
>>>> problem of "thought", I came up with the following tentative conclusions:
>>>>
>>>> (1)  *INVARIANCE:*
>>>>
>>>>        "What is common to crystals and the human brain is ORGANIZATION,
>>>>             (090415-1)
>>>>         of matter, there being various degrees of organizations, each
>>>> of which
>>>>         having a distinct function."
>>>>
>>>> (2) *EMERGENCE:*
>>>>
>>>>      "What emerges when the complexity of organization increases from
>>>>                  (090415-2)
>>>>      that of crystals to that of the human brain is *thought*."
>>>>
>>>> What connects crystals and the human brain is the living cell or life
>>>> which is in turn a highly condensed form of information leading to the
>>>> following thesis.
>>>>
>>>> (3)  *EMERGENCE of LIFE from MATTER:*
>>>>
>>>>        "Life can be viewed as highly condensed form of *information*,
>>>> just                    (090415-3)
>>>>         as physicists consider matter as highly condensed form of
>>>> *energy*" [3].
>>>>
>>>>
>>>> Statements (090415-1), (090415-2), and (090415-3), can be organized as
>>>> a hierarchy as shown in Figure 1.
>>>>
>>>>
>>>>                                       *Societies* (Languages,
>>>> sciences, technologies, arts, religions, etc.)
>>>>                                    ^
>>>>                                              |
>>>>                                       * Brains* (Self-replication with
>>>> variations, symbolic)
>>>>                                             ^
>>>>                                              |
>>>>                                          *Cells* (Life, or the highly
>>>> condensed form of information [3])
>>>>                                              ^
>>>>                                              |
>>>>                                       *Molecules* (Catalysis of
>>>> chemical reactions)
>>>>                                              ^
>>>>                                              |
>>>>                                         *Atoms* (Crystals)
>>>>
>>>> Figure 1.  Five levels of material ORGANIZATION with associated
>>>> EMERGENT properties.
>>>>
>>>>
>>>> All the best.
>>>>
>>>> Sung
>>>>
>>>>
>>> -----------------------------------------------------------------------
>> Sungchul Ji, Ph.D.
>>
>> Associate Professor of Pharmacology and Toxicology
>> Department of Pharmacology and Toxicology
>> Ernest Mario School of Pharmacy
>> Rutgers University
>> Piscataway, N.J. 08855
>> 732-445-4701
>>
>> www.conformon.net
>>
>>
>>>
>>>>
>>>>  References:
>>>>    [1] Ji, S. (2015).  Emergence vs. Invariance: Are they complementary
>>>> aspectg sof complex system
>>>> Posted to PEIRCE-L on September 1, 2015.
>>>>    [2] Ji, S. (2015).  Can crystals think ?  Posted to PEIRCE-L on
>>>> Septbmer 2, 2015.
>>>>    [3] Ji, S. (2004). Semiotics of Life: A Unified Theory of Molecular
>>>> Machines, Cells, the Mind, Peircean Signs, and the Universe based on the
>>>> Principle of Information-Energy Complementarity.
>>>> <http://www.conformon.net/wp-content/uploads/2012/12/SOLManuscriptsubmitted_final_downloaded_from_Taragona_09032011_modified_07282012.pdf>
>>>>   In:
>>>> Reports, Research Group on Mathematical Iinguistics, XVII Tarragona Seminar
>>>> on Formal Syntax and Semantics, Rovira i Virgili University, Tarragona,
>>>> 23-27 April 2003.  PDF at http://www.conformon,.net under Publications
>>>> > Proceedings and Abstracts.  P. 2.
>>>>
>>>>
>>>> On Thu, Sep 3, 2015 at 11:53 AM, Helmut Raulien <h.raul...@gmx.de>
>>>> wrote:
>>>>>
>>>>> Hi Sung,
>>>>> I think, that the human mind is a (as I call it) "causally closed"
>>>>> system, because the pictures and wishes a human has got in his/her mind,
>>>>> are not (except if they are communicated) shared by other minds. See in my
>>>>> first post about "causalities" the attachment. And I think, that crystals
>>>>> are not causally closed. The quasi-mind of the universe, or of the
>>>>> evolution, has made human minds possible, but does not have telepathical
>>>>> connection with them either. That is what I assume, but it may be
>>>>> different. Some religions say that it is, eg. the Atman- Paratman theory 
>>>>> by
>>>>> the Hindus, I think. Peirce thought, that all minds are connected, which I
>>>>> just do not understand:
>>>>>
>>>>> "[B]y the phaneron I mean the collective total of all that is in any
>>>>> way or in any sense present to the mind, quite regardless of whether it
>>>>> corresponds to any real thing or not. If you ask present when, and to 
>>>>> whose
>>>>> mind, I reply that I leave these questions unanswered, never having
>>>>> entertained a doubt that those features of the phaneron that I have found
>>>>> in my mind are present at all times and to all minds." (Adirondack
>>>>> Lectures, 1905; in Collected Papers of Charles Sanders Peirce, vol. 1 
>>>>> [eds.
>>>>> Charles Hartshorne and Paul Weiss; Cambridge, Mass.: Harvard University
>>>>> Press, 1931], paragraph 284)
>>>>>
>>>>> Best,
>>>>> Helmut
>>>>>
>>>>>  "Sungchul Ji" <s...@rci.rutgers.edu> wrote:
>>>>>
>>>>> Hi Helmut,
>>>>>
>>>>> By the same token then, wouldn't you have to say that  " . . .
>>>>> .although humans do not think, it is the quasi-mind that is thinking" ?
>>>>> The key question would be, do we need to invoke a quasi-mind to explain 
>>>>> the
>>>>> human mind ?  Aren't humans self-sufficient to think and mind ?
>>>>>
>>>>> To me, "thought" can mean either the "result" or the "process" of
>>>>> thinking.  In either case, "thought" is an example of what Prigogine 
>>>>> called
>>>>> "dissipative structures" [1, 2]  which I have abbreviated as "dissipatons"
>>>>>  in  [3].
>>>>> Again, I agree with Pickering that  crystals do not think as we do
>>>>> [4], because crystals are *equilibrium structures* and not *dissipative
>>>>> structures*.  From the thermodynamic point of view, the raising of
>>>>> questions like "Can crystals think ?" is unthinkable.
>>>>>
>>>>>
>>>>> All the best.
>>>>>
>>>>> Sung
>>>>>
>>>>>
>>>>>
>>>>> Reference:
>>>>>    [1] Prigogine, I. and Lefever, R. (1968). Symmetry-breaking
>>>>> instabilities in dissipative systems. II.  *J. Chem. Phys*. 
>>>>> *48:*1695-1700.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>    [2]  Prigogine, I. (1977).  Dissipative Structures and Biological
>>>>> Order,  *Adv. Biol. Med. Phys.* *16: *99-113.
>>>>>
>>>>>    [3] Ji, S. (2012).  Principles of Self-Organization and
>>>>> Dissipative Structures.
>>>>> <http://www.conformon.net/?attachment_id=1088> In: *Molecular Theory
>>>>> of the Living Cell: Concepts, Molecular Mechanisms, and Biomedical *
>>>>>
>>>>>   [4] Pickering, J. (2007).  Affordances are Signs.  *tripleC* *5*
>>>>> (2):64-74.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> *Applications.*  Springer, New York. Chapter 3, pp. 69-78.  PDF at
>>>>> http://www.cpnformon.net under Publications > Book Chapters.
>>>>>
>>>>> On Thu, Sep 3, 2015 at 1:53 AM, Helmut Raulien <h.raul...@gmx.de>
>>>>> wrote:
>>>>>>
>>>>>> Hi Sung, List,
>>>>>> Maybe it is correct to say, that "Thought (...) appears in the work
>>>>>> (...) of crystals", although crystals do not think, if it is the 
>>>>>> quasi-mind
>>>>>> of the universe that is thinking, but not each single crystal. Just like
>>>>>> when a human is uttering a symbolic word, it is not the word, that is
>>>>>> thinking.
>>>>>> Best,
>>>>>> Helmut
>>>>>>
>>>>>>
>>>>>>  "Sungchul Ji" <s...@rci.rutgers.edu>
>>>>>>
>>>>>> Hi Peirceans and biosemioticians,
>>>>>>
>>>>>> These following two quotes address the relations among three quite
>>>>>> distinct types of material objects -- *crystals*, *bees*, and
>>>>>> *humans*.
>>>>>>
>>>>>>
>>>>>> "Thought is no necessarily connected with a brain.  It appears in the
>>>>>> work of bees, of crystals and                    (090215-1)
>>>>>> throughout the purely physical world; and one can no more deny that
>>>>>> it is really there, than that the
>>>>>> colors, the shapes, etc. of objects are really there."  (CP 4.551)
>>>>>>
>>>>>>
>>>>>> ". . . . This is not to say that bees and crystals think in anything
>>>>>> like the way that human beings think,               (090215-2)
>>>>>> and they surely cannot know they are thinking,  . . . "  [1]
>>>>>>
>>>>>>
>>>>>> To me, the first quote of Peirce highlights the CONTINUITY or
>>>>>> invariance (i.e., thought, mind, semiosis, or ITR, irreducible triadic
>>>>>> relation) found among these material systems.  In contrast, Pickering 
>>>>>> [1],
>>>>>> while cognizant of the continuity, nevertheless, is not blind to the
>>>>>> DISCONTINUITY, or the emergent properties (resulting from the increasing
>>>>>> organizational complexities from crystals, to bees and to humans), among
>>>>>> the same set of objects.  I agree with Pickering.  Organizations are not
>>>>>> all same.  Some organizations (as in the human brain) can cause thinking
>>>>>> that is detectable by an EEG machine, while some other organizations 
>>>>>> (e.g.,
>>>>>> in crystals) cannot cause any thinking since no EEG signals can be
>>>>>> generated.
>>>>>>
>>>>>> To emphasize Statement (090215-1) at the neglect of Statement
>>>>>> (090215-2) would be akin to asserting that light is particles (ignoring 
>>>>>> its
>>>>>> wave properties) or waves (ignoring its particle properties), as was the
>>>>>> common thinking among physicists before the principle of complementarity
>>>>>> was established in the mid-1920s' [2].
>>>>>>
>>>>>> Some Peircean scholars may wish to uphold (090215-1) and deny the
>>>>>> validity of (090215-2), but, if what I referred to as "the principle of 
>>>>>> "*emergence-invariance
>>>>>> complementarity*" in my last posting on these lists [3] is right,
>>>>>> both (090215-1) and (090215-2) would be valid since they reflect the 
>>>>>> *complementary
>>>>>> aspects of mind.  *That is:
>>>>>>
>>>>>> "*Mind may be both continuous* (as Peirce asserts) *and*
>>>>>> *discontinuous* (as suggested by the complementarity principle)."
>>>>>>     (090215-3)
>>>>>>
>>>>>> All the best.
>>>>>>
>>>>>> Sung
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> Reference:
>>>>>>    [1] Pickering, J. (2007).  Affordances are Signs.  *tripleC* *5*
>>>>>> (2):64-74.
>>>>>>    [2] Plotnitsky, A. (2003).  Niel Bohr and Complementarity: An
>>>>>> Introduction.  Springer, New York.
>>>>>>    [3] Ji, S. (2015).  Emergence vs. Invariance: Are they
>>>>>> complementary aspects of complex systems ? Posted to PEIRCE-L on 
>>>>>> 9/1/2015.
>>>>>>
>>>>>> --
>>>>>> Sungchul Ji, Ph.D.
>>>>>>
>>>>>> Associate Professor of Pharmacology and Toxicology
>>>>>> Department of Pharmacology and Toxicology
>>>>>> Ernest Mario School of Pharmacy
>>>>>> Rutgers University
>>>>>> Piscataway, N.J. 08855
>>>>>> 732-445-4701
>>>>>>
>>>>>> www.conformon.net
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>
>>
>


-- 
Sungchul Ji, Ph.D.

Associate Professor of Pharmacology and Toxicology
Department of Pharmacology and Toxicology
Ernest Mario School of Pharmacy
Rutgers University
Piscataway, N.J. 08855
732-445-4701

www.conformon.net
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