[PHP] Re: [PEAR-DEV] Announcing open CVS for phpDocumentor project
It does not seem to be working at the moment. --- Greg Beaver [EMAIL PROTECTED] wrote: Hello all, Josh Eichorn has just finished setting up an open cvs for the phpDocumentor project (http://www.phpdoc.org). To get a current cvs build, use this command: cvs -d :pserver:[EMAIL PROTECTED]:/opt/cvsroot login don't enter a password, then cvs -z 3 -d :pserver:[EMAIL PROTECTED]:/opt/cvsroot co phpdoc I got: ... U phpdoc/Documentation/Release-old/Release-1.1.0rc1 U phpdoc/Documentation/Release-old/Release-1.1.0rc2 cvs server: Updating phpdoc/Documentation/old cvs server: failed to create lock directory for `/opt/cvsroot/phpdoc/Documentation/old' (/opt/cvsroot/phpdoc/Documentation/old/#cvs.lock): Permission denied cvs server: failed to obtain dir lock in repository `/opt/cvsroot/phpdoc/Documentation/old' cvs [server aborted]: read lock failed - giving up ... Seems like the repository is messed up. = --- Jesus M. Castagnetto ([EMAIL PROTECTED]) Research: http://metallo.scripps.edu/ Personal: http://www.castagnetto.org/ __ Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now. http://mailplus.yahoo.com -- PHP General Mailing List (http://www.php.net/) To unsubscribe, visit: http://www.php.net/unsub.php
[PHP] Re: [PHP-DOC] phpDocumentor version 1.1.0rc1 RELEASE ANNOUNCEMENT
Greg, You should sent this announcements to pear-dev or pear-general, not to phpdoc. In this list we deal w/ the PHP documentation (i.e. manual), *not* with the documentation of classes/scripts written in PHP. Unless, of course, phpdocumentor can read the C code for PHP and generate the appropriate DocBook pages (and translations)... ;-) Regards. --- Greg Beaver [EMAIL PROTECTED] wrote: June 9, 2002 RELEASE ANNOUNCEMENT phpDocumentor version 1.1.0rc1 http://www.phpdoc.org Download: http://phpdocu.sourceforge.net/downloads.php The phpDocumentor Development team would like to announce the release of phpDocumentor version 1.1.0rc1. This is a release candidate for 1.1.0 to ensure that all bugs have been fixed before release phpDocumentor is the most advanced auto-documentation system available for PHP. Similar to the auto-documentor included with PEAR, phpDocumentor parses documentation comments in the PHP source to create hyperlinked API references for projects. Unlike the PEAR auto-documentor, phpDocumentor is extremely fast, has excellent documentation included, and the ability to parse any legal PHP syntax. phpDocumentor is the only auto-documentor written specifically for PHP that supports output to formats other than HTML. With 1.1.0rc1 comes a pre- alpha PDF Converter to demonstrate the facility. Through the use of Converters similar to JavaDoc's doclets, phpDocumentor can interface parsing output to any template with minimal coding. In addition, 6 HTML templates come standard with phpDocumentor. Other features include: --fully 25% faster than version 1.0.0 --able to directly parse a CVS repository --parses any php file, with multiple classes and functions in the same file --fully compliant with even the most esoteric php syntax ($string = EOF, for example) --greatly improved ease of Converter programming --parsing of global and static variables --documentation of name conflicts between packages --auto-linking to elements in any package --error/warnings by line number and file to allow for debugging of documentation tags --extensive documentation of the package, including a detailed specification for tags and templates --open source, GPL phpDocumentor is fast becoming the standard auto-documentor, and is used by several PHP projects including PostNuke Content Management (http://www.postnuke.com), phpRPC (http://phprpc.sourceforge.net/), and XMap (http://opensource.under.com.br/xmap/docs/) To Download, go to http://phpdocu.sourceforge.net/downloads.php The phpDocumentor development team Joshua Eichorn Gregory Beaver = --- Jesus M. Castagnetto [EMAIL PROTECTED] __ Do You Yahoo!? Yahoo! - Official partner of 2002 FIFA World Cup http://fifaworldcup.yahoo.com -- PHP General Mailing List (http://www.php.net/) To unsubscribe, visit: http://www.php.net/unsub.php
[PHP] Re: [PHP-NOTES] note 15310 added to function.session-start
Bad design? configuration problems? You will have better luck asking in the mailing lists, not here. Your note will be removed --- [EMAIL PROTECTED] wrote: while reading alot about security here I'm noticed a couple of bugs on sites with getting into the files without actually loging in at all. For example. I have read alot about never using the variables instead use $HTTP_SESSION_VARS[example]. While doing this work with say this example. www.test.com/search.php?num=1-- the user is unable to log in to the site and is redirected. But when trying it this way www.test.com/search?num=1 its then unlocked and lets me in and I'm free to do as I please. Anybody have an explanation for that? http://www.php.net/manual/en/function.session-start.php -- PHP Notes Mailing List (http://www.php.net/) To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] To contact the list administrators, e-mail: [EMAIL PROTECTED] = --- Jesus M. Castagnetto [EMAIL PROTECTED] __ Do You Yahoo!? Get email alerts NEW webcam video instant messaging with Yahoo! Messenger http://im.yahoo.com -- PHP General Mailing List (http://www.php.net/) To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] To contact the list administrators, e-mail: [EMAIL PROTECTED]
Re: [PHP-CVS] cvs: pear /Science Chemistry.php /Science/Chemistry Atom.php Atom_PDB.php Coordinates.php Element.php Macromolecule.php Macromolecule_PDB.php Molecule.php Molecule_XYZ.php PDBFile.php PDBPa
--- Andrei Zmievski [EMAIL PROTECTED] wrote: On Tue, 10 Apr 2001, Derick Rethans wrote: hrm, is it really needed to add 3.6MB of stuff to the PHP cvs? Grr, I agree. Maybe it can wait until PEAR is out of PHP's CVS. Ehem, I did *not* commited to the code PHP code dir (php4, please *do* check the contents of php4/pear if you need confirmation), but to the stand-alone PEAR (pear, not under php4) repository, the one is going to be the separated one. Did you see it in cvs.php.net? (HINT: http://cvs.php.net/viewcvs.cgi/pear/ ) I have received several emails on this so far. I would appreaciate if people check to see where things are being commited before having kee-jerk reactions. BTW, yes, it is needed. The commit contained the whole Science_Chemistry package including classes, examples and documentation. And yes, the news should go to pear-cvs instead, but I do no have the karma to do the changes needed for this. -Andrei * Ethernet n.: something used to catch the etherbunny. * = --- Jesus M. Castagnetto [EMAIL PROTECTED] __ Do You Yahoo!? Get email at your own domain with Yahoo! Mail. http://personal.mail.yahoo.com/ -- PHP CVS Mailing List (http://www.php.net/) To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] To contact the list administrators, e-mail: [EMAIL PROTECTED]
Re: [PHP-CVS] cvs: pear /Science Chemistry.php /Science/Chemistry Atom.php Atom_PDB.php Coordinates.php Element.php Macromolecule.php Macromolecule_PDB.php Molecule.php Molecule_XYZ.php PDBFile.php PDBPa
--- Derick Rethans [EMAIL PROTECTED] wrote: hrm, is it really needed to add 3.6MB of stuff to the PHP cvs? Well, yes. The whole thing contains classes, examples and documentation for the Science_Chemistry package for PEAR. What is the problem you have encountered w/ this? Derick - PHP: Scripting the Web - www.php.net - [EMAIL PROTECTED] SRM: Site Resource Manager - www.vl-srm.net - JDI Media Solutions - www.jdimedia.nl - [EMAIL PROTECTED] Boulevard Heuvelink 102 - 6828 KT Arnhem - The Netherlands - = --- Jesus M. Castagnetto [EMAIL PROTECTED] __ Do You Yahoo!? Get email at your own domain with Yahoo! Mail. http://personal.mail.yahoo.com/ -- PHP CVS Mailing List (http://www.php.net/) To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] To contact the list administrators, e-mail: [EMAIL PROTECTED]
[PHP-CVS] cvs: pear /Science Chemistry.php /Science/Chemistry Atom.php Atom_PDB.php Coordinates.php Element.php Macromolecule.php Macromolecule_PDB.php Molecule.php Molecule_XYZ.php PDBFile.php PDBParser.php Periodic_Table.php Residue_PDB.php /Science/Chemistry/test chi_crawler.php testChem.php testPDB.php xyz2cml.php
jmcastagnetto Tue Apr 10 11:33:21 2001 EDT
Modified files:
/pear/Science Chemistry.php
/pear/Science/Chemistry Atom.php Atom_PDB.php Coordinates.php
Element.php Macromolecule.php
Macromolecule_PDB.php Molecule.php
Molecule_XYZ.php PDBFile.php PDBParser.php
Periodic_Table.php Residue_PDB.php
/pear/Science/Chemistry/testchi_crawler.php testChem.php
testPDB.php xyz2cml.php
Log:
Renamning of classes from Chem_* to Science_Chemistry_*
Index: pear/Science/Chemistry.php
diff -u pear/Science/Chemistry.php:1.1 pear/Science/Chemistry.php:1.2
--- pear/Science/Chemistry.php:1.1 Tue Apr 10 09:44:39 2001
+++ pear/Science/Chemistry.php Tue Apr 10 11:33:20 2001
@@ -16,7 +16,7 @@
// | Authors: Jesus M. Castagnetto [EMAIL PROTECTED]|
// +--+
//
-// $Id: Chemistry.php,v 1.1 2001/04/10 16:44:39 jmcastagnetto Exp $
+// $Id: Chemistry.php,v 1.2 2001/04/10 18:33:20 jmcastagnetto Exp $
//
require_once "PEAR.php";
@@ -24,7 +24,7 @@
/**
* Package version constant
*/
-define (CHEM_VERSION, 1.0);
+define (SCIENCE_CHEMISTRY_VERSION, 1.0);
require_once "Science/Chemistry/Element.php";
require_once "Science/Chemistry/Periodic_Table.php";
Index: pear/Science/Chemistry/Atom.php
diff -u pear/Science/Chemistry/Atom.php:1.1 pear/Science/Chemistry/Atom.php:1.2
--- pear/Science/Chemistry/Atom.php:1.1 Tue Apr 10 09:44:39 2001
+++ pear/Science/Chemistry/Atom.php Tue Apr 10 11:33:20 2001
@@ -16,7 +16,7 @@
// | Authors: Jesus M. Castagnetto [EMAIL PROTECTED]|
// +--+
//
-// $Id: Atom.php,v 1.1 2001/04/10 16:44:39 jmcastagnetto Exp $
+// $Id: Atom.php,v 1.2 2001/04/10 18:33:20 jmcastagnetto Exp $
//
require_once "Science/Chemistry.php";
@@ -29,7 +29,7 @@
* @access public
* @package Science_Chemistry
*/
-class Chem_Atom {
+class Science_Chemistry_Atom {
/**
* Element symbol
@@ -42,9 +42,9 @@
var $element="";
/**
- * Chem_Coordinates object
+ * Science_Chemistry_Coordinates object
*
- * @var object Chem_Coordinates
+ * @var object Science_Chemistry_Coordinates
* @access private
*
* @see getCoordinates();
@@ -58,17 +58,17 @@
* @param string $elementchemical symbol
* @param optional array $coords array of coordinates (x, y, z)
* @access public
- * @return object Chem_Atom
+ * @return object Science_Chemistry_Atom
*
* @see setCoordinates()
*/
-function Chem_Atom($element, $coords="") {
+function Science_Chemistry_Atom($element, $coords="") {
if ($element ereg("[[:alpha:]]{1,2}", $element))
$this-element = $element;
else
return null;
if (is_array($coords) count($coords) == 3)
-if (!$this-xyz = new Chem_Coordinates($coords))
+if (!$this-xyz = new Science_Chemistry_Coordinates($coords))
return null;
}
@@ -80,7 +80,7 @@
* @access public
*/
function setCoordinates($coords) {
-$this-xyz = new Chem_Coordinates($coords);
+$this-xyz = new Science_Chemistry_Coordinates($coords);
return (is_object($this-xyz) !empty($this-xyz));
}
@@ -99,7 +99,7 @@
/**
* Returns the coordinates object for the atom
*
- * @return object Chem_Coordinates
+ * @return object Science_Chemistry_Coordinates
* @access public
*
* @see $xyz;
@@ -112,34 +112,34 @@
* Calculates the cartesian distance from this atom
* instance to another
*
- * @param object Chem_Atom $atom2
+ * @param object Science_Chemistry_Atom $atom2
* @return float distance
* @access public
*/
function distance($atom2) {
-if (!empty($this-xyz) Chem_Coordinates::areCoordinates($this-xyz)
- Chem_Atom::isAtom($atom2))
+if (!empty($this-xyz)
+Science_Chemistry_Coordinates::areCoordinates($this-xyz)
+ Science_Chemistry_Atom::isAtom($atom2))
return $this-xyz-distance($atom2-xyz);
else
return -1.0;
}
/**
- * Checks if the object is an instance of Chem_Atom
+ * Checks if the object is an instance of Science_Chemistry_Atom
*
- * @param object Chem_Atom $obj
+ * @param object Science_Chemistry_Atom $obj
* @return boolean
* @access public
*/
function isAtom($obj) {
return (is_object($obj)
- (strtolower(get_class($obj))
[PHP-CVS] cvs: pear /Science/Chemistry/doc Chem_Atom.html Chem_Atom_PDB.html Chem_Coordinates.html Chem_Element.html Chem_Macromolecule.html Chem_Macromolecule_PDB.html Chem_Molecule.html Chem_Molecule_XYZ.html Chem_PDBFile.html Chem_PDBParser.html Chem_Periodic_Table.html Chem_Residue_PDB.html class_Chem_Atom.xml class_Chem_Atom_PDB.xml class_Chem_Coordinates.xml class_Chem_Element.xml class_Chem_Macromolecule.xml class_Chem_Macromolecule_PDB.xml class_Chem_Molecule.xml class_Chem_Molecule_XYZ.xml class_Chem_PDBFile.xml class_Chem_PDBParser.xml class_Chem_Periodic_Table.xml class_Chem_Residue_PDB.xml classtree_Chem_Atom.xml classtree_Chem_Coordinates.xml classtree_Chem_Element.xml classtree_Chem_Macromolecule.xml classtree_Chem_Molecule.xml classtree_Chem_PDBFile.xml classtree_Chem_PDBParser.xml classtree_Chem_Periodic_Table.xml
jmcastagnetto Tue Apr 10 11:41:16 2001 EDT Removed files: /pear/Science/Chemistry/doc Chem_Atom.html Chem_Atom_PDB.html Chem_Coordinates.html Chem_Element.html Chem_Macromolecule.html Chem_Macromolecule_PDB.html Chem_Molecule.html Chem_Molecule_XYZ.html Chem_PDBFile.html Chem_PDBParser.html Chem_Periodic_Table.html Chem_Residue_PDB.html class_Chem_Atom.xml class_Chem_Atom_PDB.xml class_Chem_Coordinates.xml class_Chem_Element.xml class_Chem_Macromolecule.xml class_Chem_Macromolecule_PDB.xml class_Chem_Molecule.xml class_Chem_Molecule_XYZ.xml class_Chem_PDBFile.xml class_Chem_PDBParser.xml class_Chem_Periodic_Table.xml class_Chem_Residue_PDB.xml classtree_Chem_Atom.xml classtree_Chem_Coordinates.xml classtree_Chem_Element.xml classtree_Chem_Macromolecule.xml classtree_Chem_Molecule.xml classtree_Chem_PDBFile.xml classtree_Chem_PDBParser.xml classtree_Chem_Periodic_Table.xml Log: Removed old docs, will update for the renaming of class from Chem_* to Science_Chemistry_* -- PHP CVS Mailing List (http://www.php.net/) To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] To contact the list administrators, e-mail: [EMAIL PROTECTED]
[PHP-CVS] cvs: pear /Science/Chemistry/doc packageelementlist_Chem.html
jmcastagnetto Tue Apr 10 11:41:50 2001 EDT Removed files: /pear/Science/Chemistry/doc packageelementlist_Chem.html Log: old doc -- PHP CVS Mailing List (http://www.php.net/) To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] To contact the list administrators, e-mail: [EMAIL PROTECTED]
[PHP-CVS] cvs: pear /Science/Chemistry/doc Science_Chemistry_Atom.html Science_Chemistry_Atom_PDB.html Science_Chemistry_Coordinates.html Science_Chemistry_Element.html Science_Chemistry_Macromolecule.html Science_Chemistry_Macromolecule_PDB.html Science_Chemistry_Molecule.html Science_Chemistry_Molecule_XYZ.html Science_Chemistry_PDBFile.html Science_Chemistry_PDBParser.html Science_Chemistry_Periodic_Table.html Science_Chemistry_Residue_PDB.html class_Science_Chemistry_Atom.xml class_Science_Chemistry_Atom_PDB.xml class_Science_Chemistry_Coordinates.xml class_Science_Chemistry_Element.xml class_Science_Chemistry_Macromolecule.xml class_Science_Chemistry_Macromolecule_PDB.xml class_Science_Chemistry_Molecule.xml class_Science_Chemistry_Molecule_XYZ.xml class_Science_Chemistry_PDBFile.xml class_Science_Chemistry_PDBParser.xml class_Science_Chemistry_Periodic_Table.xml class_Science_Chemistry_Residue_PDB.xml classtree_Science_Chemistry_Atom.xml classtree_Science_Chemistry_Coordinates.xml classtree_Science_Chemistry_Element.xml classtree_Science_Chemistry_Macromolecule.xml classtree_Science_Chemistry_Molecule.xml classtree_Science_Chemistry_PDBFile.xml classtree_Science_Chemistry_PDBParser.xml classtree_Science_Chemistry_Periodic_Table.xml elementlist.xml packageelementlist_Science_Chemistry.html packagelist.xml phpdoc_classtree.html phpdoc_elementlist.html phpdoc_packagelist.html phpdoc_warnings.html phpdoc_xmlfiles.html warnings_classanalyser.xml warnings_parser.xml
jmcastagnetto Tue Apr 10 11:44:25 2001 EDT Added files: /pear/Science/Chemistry/doc Science_Chemistry_Atom.html Science_Chemistry_Atom_PDB.html Science_Chemistry_Coordinates.html Science_Chemistry_Element.html Science_Chemistry_Macromolecule.html Science_Chemistry_Macromolecule_PDB.html Science_Chemistry_Molecule.html Science_Chemistry_Molecule_XYZ.html Science_Chemistry_PDBFile.html Science_Chemistry_PDBParser.html Science_Chemistry_Periodic_Table.html Science_Chemistry_Residue_PDB.html class_Science_Chemistry_Atom.xml class_Science_Chemistry_Atom_PDB.xml class_Science_Chemistry_Coordinates.xml class_Science_Chemistry_Element.xml class_Science_Chemistry_Macromolecule.xml class_Science_Chemistry_Macromolecule_PDB.xml class_Science_Chemistry_Molecule.xml class_Science_Chemistry_Molecule_XYZ.xml class_Science_Chemistry_PDBFile.xml class_Science_Chemistry_PDBParser.xml class_Science_Chemistry_Periodic_Table.xml class_Science_Chemistry_Residue_PDB.xml classtree_Science_Chemistry_Atom.xml classtree_Science_Chemistry_Coordinates.xml classtree_Science_Chemistry_Element.xml classtree_Science_Chemistry_Macromolecule.xml classtree_Science_Chemistry_Molecule.xml classtree_Science_Chemistry_PDBFile.xml classtree_Science_Chemistry_PDBParser.xml classtree_Science_Chemistry_Periodic_Table.xml packageelementlist_Science_Chemistry.html Modified files: /pear/Science/Chemistry/doc elementlist.xml packagelist.xml phpdoc_classtree.html phpdoc_elementlist.html phpdoc_packagelist.html phpdoc_warnings.html phpdoc_xmlfiles.html warnings_classanalyser.xml warnings_parser.xml Log: New docs after renaming of classes from Chem_* to Science_Chemistry_* a good solution, until PHP gets some sort of namespace Index: pear/Science/Chemistry/doc/elementlist.xml diff -u pear/Science/Chemistry/doc/elementlist.xml:1.1 pear/Science/Chemistry/doc/elementlist.xml:1.2 --- pear/Science/Chemistry/doc/elementlist.xml:1.1 Tue Apr 10 09:44:39 2001 +++ pear/Science/Chemistry/doc/elementlist.xml Tue Apr 10 11:44:24 2001 @@ -1 +1 @@ -?xml version="1.0"?phpdocindexchapter char="C"element type="class" source="" sourcetype="class" name="Chem_Atom_PDB"Represents a PDB atom record/elementelement type="functions" source="Chem_Atom_PDB" sourcetype="class" name="Chem_Atom_PDB"/element type="class" source="" sourcetype="class" name="Chem_Atom"Base class representing an Atom/elementelement type="functions" source="Chem_Atom" sourcetype="class" name="Chem_Atom"Constructor for the class, requires the element symbol/elementelement type="class" source="" sourcetype="class" name="Chem_Coordinates"Utility class for defining 3D coordinates and/elementelement type="functions" source="Chem_Coordinates" sourcetype="class" name="Chem_Coordinates"Constructor for the class, returns null if parameter is/elementelement type="class" source="" sourcetype="class" name="Chem_Element"Utility class that defines a chemical element object/elementelement type="functions" source="Chem_Element" sourcetype="class" name="Chem_Element"Constructor for the class/elementelement type="class" source="" sourcetype="class" name="Chem_Macromolecule_PDB"Represents a PDB macromolecule, composed of several/elementelement type="functions" source="Chem_Macromolecule_PDB" sourcetype="class" name="Chem_Macromolecule_PDB"Constructor for the class/elementelement type="class" source="" sourcetype="class" name="Chem_Macromolecule"Represents a macromolecule, composed of several/elementelement type="functions" source="Chem_Macromolecule" sourcetype="class" name="Chem_Macromolecule"Constructor for the class, requires a macromolecule name/elementelement
