RE: [PyMOL] CMYK colors

2002-10-22 Thread DeLano, Warren
Thanks for the suggestion?

For now, why not just redefine the existing colors? 

No need for a leading underscore...

set_color green= [0.00 , 0.53 , 0.22]

etc.

Note that there are default atom colors such as "carbon", "nitrogen", "oxygen", 
"hydrogen", "sulfur", etc. which should also be redefined.

set_color carbon= [0.00 , 0.53 , 0.22]

etc, 

Warren


> -Original Message-
> From: Gil Prive [mailto:pr...@uhnres.utoronto.ca]
> Sent: Friday, October 18, 2002 1:38 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] CMYK colors
> 
> 
> 
> This is not directly PyMOL specific, but it addresses a 
> problem I think 
> a lot of us have encountered in preparing hardcopy outputs.
> 
> Some RGB triplets do have equivalents in CMYK space, and as a 
> result, a 
> figure that looks great on a screen can come out with unpredictable 
> colors when printed.
> 
> Most applications do a good job with RGB-to-CMYK conversions 
> for photos, 
> but do not do such a good job with graphics that use pure primary 
> colors.  For example, reds are generally OK, but pure blues 
> and greens 
> do not translate very well.
> 
> Here are some RGB values that are within the CMYK gamut  (i.e. are 
> "CMYK-safe"):
> 
> 
> ##
> #optimized rgb values for cmyk output:
> set_color _dblue= [0.05 , 0.19 , 0.57]
> set_color _blue=  [0.02 , 0.50 , 0.72]
> set_color _mblue= [0.5  , 0.7  , 0.9 ]
> set_color _lblue= [0.86 , 1.00 , 1.00]
> 
> set_color _green= [0.00 , 0.53 , 0.22]
> set_color _lgreen=[0.50 , 0.78 , 0.50]
> 
> set_color _yellow=[0.95 , 0.78 , 0.00]
> 
> set_color _orange=[1.00 , 0.40 , 0.0 ]
> 
> # these are trivial
> set_color _red=   [1.00 , 0.00 , 0.00]
> set_color _mred=  [1.00 , 0.40 , 0.40]
> set_color _lred=  [1.00 , 0.80 , 0.80]
> set_color _vlred= [1.00 , 0.90 , 0.90]
> set_color _white= [1.00 , 1.00 , 1.00]
> set_color _vlgray=[0.95 , 0.95 , 0.95]
> set_color _lgray= [0.90 , 0.90 , 0.90]
> set_color _gray=  [0.70 , 0.70 , 0.70]
> set_color _dgray= [0.50 , 0.50 , 0.50]
> set_color _vdgray=[0.30 , 0.30 , 0.30]
> set_color _black= [0.00 , 0.00 , 0.00]
> ##
> 
> 
> There may be a more elegant way to do this (specific to the OS and 
> post-PyMOL application), but this is a simple solution.
> 
> 
> Wishlist:
> It would be useful to specify a "CMYK mode" in PyMOL, so that 
> the color 
> palate uses RGB colors that have good CMYK equivalents.  This would 
> simplify color selection when preparing hardcopy figures.
> 
> 
> With apologies to color-matching gurus,
> Gil
> 
> 
> ==
> Gil Privé
> Ontario Cancer Institute
> University of Toronto
> 
> pr...@uhnres.utoronto.ca
> http://xtal.uhnres.utoronto.ca/prive
> ==
> 
> 
> 
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[PyMOL] Pymol 0.82-Error

2002-10-22 Thread Marc Saric

Hi there,

Today I stumbled over a bug in Pymol:

If I load a certain molecule (can be provided if needed) into Pymol 0.82 
together with rubor.py from Christian Rothers rTools, and do some 
operations on it (detailed log can also be provided) after setting the 
display-quality to "Maximum Performance" and back to "Maximum Quality, 
Pymol crashes with the following error-message:


"""
PyMOL>rebuild
NULL-POINTER-ERROR: in RepSphere.c line 379
 PyMOL: abrupt program termination.
"""

This could be reproduced, so it might be worth looking at it.

--
Bye,  Marc Saric

Max-Planck-Institut fuer molekulare Physiologie
Otto-Hahn-Str.11  44227 Dortmund  phone:0231/133-2168




[PyMOL] distance parameters

2002-10-22 Thread franck coste
Hi,
I'd like to know if it's possible to change the parameters of the
DISTANCE command (color, radius, ...)
Thanks,
Franck Coste.