[PyMOL] Coloring structure by hydrophobicity

[Andrew D. Fant]

Afternoon all,
   I apologize if this has been hashed over on the list in the past. I haven't
been keeping up like I used to.
   Is there a good way to calculate and color residues by hydrophobicity in
pymol?  A google search showed only a very simple script that was based entirely
on a single-residue lookup table.  I'm looking at a set of structure
predictions, and it would be nice to easily see that a fold exposes a large
patch of hydrophobic surface to solvent.

Thanks,
Andy

-- 
Andrew Fant| And when the night is cloudy| This space to let
Molecular Geek | There is still a light  |--
f...@pobox.com | That shines on me   | Disclaimer:  I don't
Boston, MA | Shine until tomorrow, Let it be | even speak for myself

[PyMOL] RMS values output to plugin?

[Brett Hanson]

I am trying to get the RMS values from pymol's align function to print into a 
plugin I've made. I have so far been unable to pipeline the info out and have 
not found a way to call back RMS values in pymol's cmd line. I have also not 
been able to figure out how to use the  align function source code to fanangle 
it either.  Any suggestions would be greatly appreciated.
 
 Thanks in advance,

Brett Hanson

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