[PyMOL] Procedure for adding packages to pymol site-packages?
Hi, how would I go about adding a package to the $PYMOL_PATH/ext/.../site-packages w/o screwing up the install? For most packages the mechanism is python setup.py install. Would this work to run this from within pymol? Thanks Carsten
Re: [PyMOL] Procedure for adding packages to pymol site-packages?
Carsten, Unfortunately not -- the trick to getting something like this to work is to build your stuff against a standalone Python executable using the identical Python version as PyMOL version to then copy your working, pre-built modules over into the PyMOL distribution ($PYMOL_PATH/modules). Cheers, Warren -Original Message- From: Schubert, Carsten [PRDUS] [mailto:cschu...@its.jnj.com] Sent: Friday, March 06, 2009 12:38 PM To: pymol-users@lists.sourceforge.net Subject: [PyMOL] Procedure for adding packages to pymol site-packages? Hi, how would I go about adding a package to the $PYMOL_PATH/ext/.../site- packages w/o screwing up the install? For most packages the mechanism is python setup.py install. Would this work to run this from within pymol? Thanks Carsten -- Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise -Strategies to boost innovation and cut costs with open source participation -Receive a $600 discount off the registration fee with the source code: SFAD http://p.sf.net/sfu/XcvMzF8H ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
[PyMOL] model refuses to display surface and mesh
Dear pyMol users, I am trying to load a simple model using python into pymol using the following script. All works perfectly until i click for this new model to display its surface or mesh. The other thing is that in older versions 0.99rc the surface and mesh were correctly displayed, however this works no longer with 1.1 version Does anyone know how to fix the issue? Thanks. Petr Benes from chempy.models import Indexed from chempy import Bond, Atom from whrandom import random from pymol import cmd model = Indexed() # create some atoms for a in range(1,11): at = Atom() at.name = X%02d%a at.coord = [random()*5,random()*5,random()*5] at.vdw = 2.0 model.atom.append(at) # now create some bonds for a in range(1,10): bd = Bond() bd.index = [a-1,a] # zero-based indices! model.bond.append(bd) # now load and label cmd.load_model(model,example) cmd.label(example,name)
