Re: [PyMOL] Pymol problem under Centos 5.4
Hi Harry, Do you build Pymol yourself on CentOS5 ? If so, do you have tkinter and python-pmw (third-party package) installed ? Rafael. On 6/1/11 11:37 AM, Harry Greenblatt wrote: BSD Dear All, We have a quad core Intel machine with a GeForce 7300 card on which we recently installed Centos 5.4. We downloaded the latest nVidia driver, 270.41.19, and that seemed to work. A recent version of Coot works. But Pymol 1.3 and 1.2 seem to start up fine, recognizing the card and driver, but the graphics screen remains blank (actually a snapshot of the desktop image behind the window). No error messages, but no graphics in the window. Any ideas? Thanks Harry - Harry M. Greenblatt Associate Staff Scientist Dept of Structural biologyharry.greenbl...@weizmann.ac.il mailto:harry.greenbl...@weizmann.ac.il Weizmann Institute of SciencePhone:972-8-934-3625 Rehovot, 76100Facsimile:972-8-934-4159 Israel -- Simplify data backup and recovery for your virtual environment with vRanger. Installation's a snap, and flexible recovery options mean your data is safe, secure and there when you need it. Data protection magic? Nope - It's vRanger. Get your free trial download today. http://p.sf.net/sfu/quest-sfdev2dev ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Simplify data backup and recovery for your virtual environment with vRanger. Installation's a snap, and flexible recovery options mean your data is safe, secure and there when you need it. Data protection magic? Nope - It's vRanger. Get your free trial download today. http://p.sf.net/sfu/quest-sfdev2dev___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] problems cloring sticks
Hi Pymolers, I am having problems coloring residues when they are shown as stick. The coloring is properly working for the other representations like, lines, surface or spheres. I am using Pymol 1.2r2 under Ubuntu 11,04. Thanks in advanced, best regrads, Ariel Centro de Inmunologia Molecular phone: +537 2717933 e-mail: c...@cim.sld.cu web:www.cim.co.cu Disclaimer added by CodeTwo Exchange Rules 2007 http://www.codetwo.com -- Simplify data backup and recovery for your virtual environment with vRanger. Installation's a snap, and flexible recovery options mean your data is safe, secure and there when you need it. Data protection magic? Nope - It's vRanger. Get your free trial download today. http://p.sf.net/sfu/quest-sfdev2dev ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] problems cloring sticks
Hi Ariel, This is a known problem on some machines with ATI or Intel video cards. You can try upgrading to a newer version of PyMOL. Also, please check that your video driver is the newest for your video card. If I find a solution on our side that fixes this, I'll update the open-source. Cheers, -- Jason On Wed, Jun 1, 2011 at 12:04 PM, Ariel Talavera talav...@cim.sld.cu wrote: Hi Pymolers, I am having problems coloring residues when they are shown as stick. The coloring is properly working for the other representations like, lines, surface or spheres. I am using Pymol 1.2r2 under Ubuntu 11,04. Thanks in advanced, best regrads, Ariel Centro de Inmunologia Molecular phone: +537 2717933 e-mail: c...@cim.sld.cu web: www.cim.co.cu Disclaimer added by CodeTwo Exchange Rules 2007 http://www.codetwo.com -- Simplify data backup and recovery for your virtual environment with vRanger. Installation's a snap, and flexible recovery options mean your data is safe, secure and there when you need it. Data protection magic? Nope - It's vRanger. Get your free trial download today. http://p.sf.net/sfu/quest-sfdev2dev ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Simplify data backup and recovery for your virtual environment with vRanger. Installation's a snap, and flexible recovery options mean your data is safe, secure and there when you need it. Data protection magic? Nope - It's vRanger. Get your free trial download today. http://p.sf.net/sfu/quest-sfdev2dev ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
