Dear Thomas, that did the trick! Thank you so much!
Cheers, Christian Am 15.11.2013 15:59, schrieb Thomas Holder: > Hi Christian, > > set defer_builds_mode to 3, this will prevent caching the geometry for all > states. > > http://pymolwiki.org/index.php/Defer_builds_mode > > Cheers, > Thomas > > On 09 Nov 2013, at 13:58, Christian Becke <christian.be...@fu-berlin.de> > wrote: > >> Dear pymol users, >> >> I'm trying to create a movie, using lsqman and pymol, of a molecule of >> ~1700 residues (HETATMs deleted, no hydrogens, alternative conformations >> removed). I created 60 pdb files with lsqman and loaded them (as >> different states of the molecule) into pymol. In the default "lines" >> representation, pymol plays all right through all 60 frames. However, as >> soon as I try a more fancy representation ("sticks" or "cartoon"), pymol >> runs out of memory, recommending to "reduce the quality, size, or >> complexity of the scene" (this is on Linux, pymol svn revision 4037, on >> a Core2 Duo, NVIDIA Quadro, 4 GB RAM). From what I read, people created >> movies of the ribosome using pymol, so ~1700 residues should not be a >> problem, right? >> I tried reducing the viewport to stamp size (120 x 240), to no avail. >> Which other settings should I check in order to "reduce quality, size, >> or complexity"? >> I would be grateful for any hints on how to get this going. >> >> >> Thanks in advance, >> >> Christian -- Christian Becke Freie Universität Berlin Fachbereich Biologie, Chemie, Pharmazie Institut für Chemie und Biochemie AG Strukturbiochemie Takustr. 6 14195 Berlin Germany Phone: +49 (0)30 838-57344 Fax: +49 (0)30 838-56981 E-mail: christian.be...@fu-berlin.de ------------------------------------------------------------------------------ DreamFactory - Open Source REST & JSON Services for HTML5 & Native Apps OAuth, Users, Roles, SQL, NoSQL, BLOB Storage and External API Access Free app hosting. Or install the open source package on any LAMP server. Sign up and see examples for AngularJS, jQuery, Sencha Touch and Native! http://pubads.g.doubleclick.net/gampad/clk?id=63469471&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
