Re: [PyMOL] Align more than two structures

[Saurabh Gayali]

extra_fit aligns multiple objects to a reference object.


https://pymolwiki.org/index.php/Extra_fit



Regards,
*Saurabh Gayali*
-


On Wed, Jul 10, 2019 at 9:25 AM Neena Susan Eappen 
wrote:

> Hello PyMOL users,
>
> How to align more than two structures in pymol?
>
> Thank you,
> Neena
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[PyMOL] Align more than two structures

[Neena Susan Eappen]

Hello PyMOL users,

How to align more than two structures in pymol?

Thank you,
Neena
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Re: [PyMOL] Search error in PyMOLWiki

[Jason Key]

Hi Timofey,

This should be fixed now.
Please let me know if you find otherwise.

Cheers,
Jason

-- 
*Jason Key, PhD*
Structural Biology Grid   - SBGrid.org 
Harvard Medical School - hms.harvard.edu
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[PyMOL] Plugin upload.

[Wael Azzam via PyMOL-users]

To whom it may concern,

I am writing to you in the hopes of knowing how to upload a PyMol plugin that I 
developed on the page PyMolWiki ?

Best regards,

Wael Azzam
B.S in Bioinformatics 
Lebanese American University, Beirut





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Re: [PyMOL] The 'select' command for complex residue selection

[Thomas Holder]

The last parentheses is not the ASCII character ")" (code 41), but the unicode 
character "）" (code U+FF09) and PyMOL can't handle that.

https://www.compart.com/en/unicode/U+FF09

Cheers,
  Thomas


> On Jul 9, 2019, at 5:47 AM, Kevin Jude  wrote:
> 
> Strange, I get the same error and can't figure out why it doesn't like the 
> parentheses around the second term, though here are a few formulations that 
> give the correct result without syntax errors:
> 
>  select sele, protein_A and chain A and (resi 29-33 or resi 70-73 or resi 
> 116-119) or protein_A and chain C and resi 87-95
>  select sele, (protein_A and chain C and resi 87-95) or (protein_A and chain 
> A and (resi 29-33 or resi 70-73 or resi 116-119))
>  select sele, protein_A and chain C and resi 87-95 or (protein_A and chain A 
> and (resi 29-33 or resi 70-73 or resi 116-119))
>  select sele, protein_A and chain C and resi 87-95 or (protein_A and chain A 
> and resi 29-33 or resi 70-73 or resi 116-119)
> 
> --
> Kevin Jude, PhD
> Structural Biology Research Specialist, Garcia Lab
> Howard Hughes Medical Institute
> Stanford University School of Medicine
> Beckman B177, 279 Campus Drive, Stanford CA 94305
> Phone: (650) 723-6431
> 
> On Mon, Jul 8, 2019 at 7:40 PM sunyeping via PyMOL-users 
>  wrote:
> Dear all, 
> 
> In pymol I loaded two protein: protein_A and protein_B. I want to make a 
> selection of some incontinuous residues from two chains of protein_A, for 
> example, residue 30-34, 71-74 and 117-120 from chain A and residue 88-96 from 
> chain C. How should I write the select command? I tried the following:
> 
>select sele, (protein_A and chain A and (resi 29-33 or resi 70-73 or resi 
> 116-119)) or (protein_A and chain C and resi 87-95）
> 
> but it returns syntax error. So what is the correct command for this?
> 
> Thank you in advance

--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.



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