Re: [PyMOL] different stick_radius for different residues
Thanks a lot! I have a another question. Is there way to define a group of residues which are not linked to each other. I tried create forst2, (resi 1 and resi 32 and resi 356) but it doesn't work. Thanks, Frank --- Morri Feldman mfeld...@itsa.ucsf.edu wrote: Dear Frank, try: create forSticks1, resi 1-2 show sticks, forSticks1 set stick_radius, .25, forSticks1 create forSticks2, resi 12-15 show sticks, forSticks2 set stick_radius, .1, forSticks2 By using create, you create a new named object with its own settings database. The new object's settings can be set independently of other objects. Best, Morri On Tue, 3 Feb 2004, Dr. S. Frank Yan wrote: Hi, I was wondering if Pymol is capable of setting different stick thickness for different residues of a molecule. I tried set stick_radius=0.25 show sticks, resi 1-2 set stick_radius=0.1 show sticks, resi 12-15 It appears that the stick_radius variable is global, and it changes the thickness of all the sticks. Thanks, Frank __ Do you Yahoo!? Yahoo! SiteBuilder - Free web site building tool. Try it! http://webhosting.yahoo.com/ps/sb/ --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users __ Do you Yahoo!? Yahoo! Finance: Get your refund fast by filing online. http://taxes.yahoo.com/filing.html
[PyMOL] different stick_radius for different residues
Hi, I was wondering if Pymol is capable of setting different stick thickness for different residues of a molecule. I tried set stick_radius=0.25 show sticks, resi 1-2 set stick_radius=0.1 show sticks, resi 12-15 It appears that the stick_radius variable is global, and it changes the thickness of all the sticks. Thanks, Frank __ Do you Yahoo!? Yahoo! SiteBuilder - Free web site building tool. Try it! http://webhosting.yahoo.com/ps/sb/
Re: [PyMOL] hardware stereo using pymol
Hi, Thanks for the reply. We set them; however, it is still not working yet. I can see the pymol screen is flickering, but the emitter is apparently not turned on (no red light). --- Andreas Aemissegger aemisseg...@org.chem.ethz.ch wrote: On Saturday 17 January 2004 03:25, Dr. S. Frank Yan wrote: I'm using stereographics crystaleye with e-2 emitter and Quadro2 Pro graphics card, which does support the emitter. I am able to set the stereo on, and the screen starts to flick a little; however, the emitter is not turned on by the program and therefore no stereo. Stereographics claims that the emitter has to be turned on/off by application program when the stereo is enabled/disabled. I was wondering if anyone has experience with that. Thanks a lot, Frank Which OS is that? If you are on Linux, make sure you configure your X11 properly: 1) use the nvidia driver 2) load the glx module 3) remove the dri and GLcore modules 4) Most important: add Option Stereo 3 to the nvidia device section to turn on support for onboard stereo Regards Andreas -- Andreas Aemissegger, Laboratory of Organic Chemistry ETH Hoenggerberg - HCI F322, 8093 Zurich, Switzerland Phone: +41 1 632 2972, Fax: +41 1 632 1486 Mail: aemisseg...@org.chem.ethz.ch, WWW: http://www.protein.ethz.ch PGP key on request --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users __ Do you Yahoo!? Yahoo! Hotjobs: Enter the Signing Bonus Sweepstakes http://hotjobs.sweepstakes.yahoo.com/signingbonus
[PyMOL] hardware stereo using pymol
I'm using stereographics crystaleye with e-2 emitter and Quadro2 Pro graphics card, which does support the emitter. I am able to set the stereo on, and the screen starts to flick a little; however, the emitter is not turned on by the program and therefore no stereo. Stereographics claims that the emitter has to be turned on/off by application program when the stereo is enabled/disabled. I was wondering if anyone has experience with that. Thanks a lot, Frank __ Do you Yahoo!? Yahoo! Hotjobs: Enter the Signing Bonus Sweepstakes http://hotjobs.sweepstakes.yahoo.com/signingbonus
