Hi, I constructed a model (.pdb format) and attempted to eliminated some of the excessive contortions in the loop when opened in PYMOL. I was using "Auto-sculpting" to eliminate these contortions. All looked great, but when I saved my work to a .pdb file and opened it back up, it contained broken, stretched, and ugly bonds!!. Perhaps I have am not using the right tool for this task? When I open my model in Swiss PDB Viewer, all is fine. However, I need the graphics and great picture quality that PYMOL creates. Can you tell me a better approach to eliminating contortions in loops in PYMOL or perhaps another program that I should use with just as great graphics?
Matt Wagner The Gogonea Group Cleveland, OH 44106 216-875-9723
