Hi Raul,
I don't think the bond guessing routine is exposed to the python API.
This would actually be very useful, so I take this as a feature request.
Meanwhile, I guess you need some workaround like dumping to PDB format
and loading as PDB again. Have a look at cmd.get_pdbstr and cmd.read_pdbstr.
Cheers,
Thomas
Raúl Mera Adasme wrote, On 09/17/13 19:15:
Hi all,
I want to load a chempy model into PyMOL. Unfortunately, the model has
all the coordinate information, but not bonds defined.
I know PyMOL can guess the bonds from the distances, but it does not
do it if I just use cmd.load_model, and I could not find a way of
doing it.
Does anyone know how can I achieve this?
Thanks!
Raul
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Thomas Holder
PyMOL Developer
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