[PyMOL] Keeping PDB ordering

2008-04-24 Thread Martin Höfling 
Hi all,

is there a simple way to prevent reordering of atoms and insertion of 
additional TER records by pymol? I have a protein embedded in a bilayer with 
tip4p water, where this occurs when I delete parts and export the rest of the 
System.

Best wishes
Martin

Re: [PyMOL] Keeping PDB ordering

2008-04-24 Thread DeLano Scientific 
Matrin,

set retain_order

before loading the input PDB file.

Depending on the application, you may also wish to 

set pdb_retain_ids

Cheers,
Warren

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 -Original Message-
 From: pymol-users-boun...@lists.sourceforge.net 
 [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf 
 Of Martin Höfling
 Sent: Thursday, April 24, 2008 11:13 AM
 To: pymol-users@lists.sourceforge.net
 Subject: [PyMOL] Keeping PDB ordering
 
 Hi all,
 
 is there a simple way to prevent reordering of atoms and 
 insertion of additional TER records by pymol? I have a 
 protein embedded in a bilayer with tip4p water, where this 
 occurs when I delete parts and export the rest of the System.
 
 Best wishes
   Martin
 
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