Hi Pascal,
I don't think that PyMOL has an automatic renaming mode for those names.
But you can rename them manually:
alter name O1P, name="OP1"
alter name O2P, name="OP2"
http://pymolwiki.org/index.php/Alter
Cheers,
Thomas
Pascal Auffinger wrote, On 06/27/12 19:13:
> Hi,
>
> What is the current status of Pymol with respect to O1P or OP1 atom
> labels in nucleic acid ?
> The current PDB convention is OP1 and OP2.
> Is there an option in pymol to save the coordinates with this convention ?
>
> Thanks,
>
> Pascal
>
> -
> Pascal Auffinger
> IBMC/CNRS
> 15 rue René Descartes
> 67084 Strasbourg Cedex
>
> p.auffin...@ibmc-cnrs.unistra.fr
> -
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