Re: [PyMOL] Pymol 2.1 graphics error
Hi Andy, > thanks for the responses. The -M option did the trick. What does it do? Great! The -M ("mono") option skips the attempt to detect hardware stereo (a.k.a. quad buffered, available with Nvidia Quadro cards and 3D vision). Did you install pymol with conda? Recently, pyqt=5.9 packages appeared in the default anaconda channel, but unfortunately PyQt >5.6 doesn't handle the stereo request properly on non-stereo hardware. Downgrading helps (conda install pyqt=5.6). Cheers, Thomas -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Pymol 2.1 graphics error
Hi all, thanks for the responses. The -M option did the trick. What does it do? Best, Andy On 05/09/2018 10:14 PM, David Mathog wrote: On 09-May-2018 12:52, Thomas Holder wrote: Hi Andy, Does it help if you launch PyMOL with "-M"? pymol -M If not, can you be more specific about the symptoms? Is it just slow or do you get flickering, wrong rendering, crashes, etc.? Are you working directly on the machine's console or over a network to a remote X11 server? Graphics intensive programs which are smooth when running locally are often quite jerky when displayed remotely, even on a wired local network. On May 9, 2018, at 8:01 PM, Andreas Tosstorff wrote: Hi all, I just installed PyMol 2.1 on my system (Centos 7) and there are some issues with displaying any structures. I get the following error, however I'm not sure whether that's what's causing the actual laggy graphics: "This Executable Build integrates and extends Open-Source PyMOL. Detected OpenGL version 2.0 or greater. Shaders available. Geometry shaders not available SMAA not available Detected GLSL version 1.30. OpenGL graphics engine: GL_VENDOR: Intel Open Source Technology Center GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2) GL_VERSION: 3.0 Mesa 17.0.1 GL_ERROR : 1282" I'm new to Pymol and Linux so please excuse me if I'm missing something. Thanks, Andy -- M.Sc. Andreas Tosstorff Lehrstuhl für Pharmazeutische Technologie und Biopharmazie Department Pharmazie LMU München Butenandtstr. 5-13 ( Haus B) 81377 München Germany Tel.: +49 89 2180 77059 -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. Regards, David Mathog mat...@caltech.edu Manager, Sequence Analysis Facility, Biology Division, Caltech -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- -- M.Sc. Andreas Tosstorff Lehrstuhl für Pharmazeutische Technologie und Biopharmazie Department Pharmazie LMU München Butenandtstr. 5-13 ( Haus B) 81377 München Germany Tel.: +49 89 2180 77059 -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Pymol 2.1 graphics error
On 09-May-2018 12:52, Thomas Holder wrote: Hi Andy, Does it help if you launch PyMOL with "-M"? pymol -M If not, can you be more specific about the symptoms? Is it just slow or do you get flickering, wrong rendering, crashes, etc.? Are you working directly on the machine's console or over a network to a remote X11 server? Graphics intensive programs which are smooth when running locally are often quite jerky when displayed remotely, even on a wired local network. On May 9, 2018, at 8:01 PM, Andreas Tosstorff wrote: Hi all, I just installed PyMol 2.1 on my system (Centos 7) and there are some issues with displaying any structures. I get the following error, however I'm not sure whether that's what's causing the actual laggy graphics: "This Executable Build integrates and extends Open-Source PyMOL. Detected OpenGL version 2.0 or greater. Shaders available. Geometry shaders not available SMAA not available Detected GLSL version 1.30. OpenGL graphics engine: GL_VENDOR: Intel Open Source Technology Center GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2) GL_VERSION: 3.0 Mesa 17.0.1 GL_ERROR : 1282" I'm new to Pymol and Linux so please excuse me if I'm missing something. Thanks, Andy -- M.Sc. Andreas Tosstorff Lehrstuhl für Pharmazeutische Technologie und Biopharmazie Department Pharmazie LMU München Butenandtstr. 5-13 ( Haus B) 81377 München Germany Tel.: +49 89 2180 77059 -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. Regards, David Mathog mat...@caltech.edu Manager, Sequence Analysis Facility, Biology Division, Caltech -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Pymol 2.1 graphics error
Hi Andy, Does it help if you launch PyMOL with "-M"? pymol -M If not, can you be more specific about the symptoms? Is it just slow or do you get flickering, wrong rendering, crashes, etc.? Thanks, Thomas > On May 9, 2018, at 8:01 PM, Andreas Tosstorff > wrote: > > Hi all, > > I just installed PyMol 2.1 on my system (Centos 7) and there are some issues > with displaying any structures. > > I get the following error, however I'm not sure whether that's what's causing > the actual laggy graphics: > > "This Executable Build integrates and extends Open-Source PyMOL. > Detected OpenGL version 2.0 or greater. Shaders available. > Geometry shaders not available > SMAA not available > Detected GLSL version 1.30. > OpenGL graphics engine: > GL_VENDOR: Intel Open Source Technology Center > GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2) > GL_VERSION: 3.0 Mesa 17.0.1 > GL_ERROR : 1282" > > I'm new to Pymol and Linux so please excuse me if I'm missing something. > > Thanks, > > Andy > > > -- > M.Sc. Andreas Tosstorff > Lehrstuhl für Pharmazeutische Technologie und Biopharmazie > Department Pharmazie > LMU München > Butenandtstr. 5-13 ( Haus B) > 81377 München > Germany > Tel.: +49 89 2180 77059 > > -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Pymol 2.1 graphics error
Hi all, I just installed PyMol 2.1 on my system (Centos 7) and there are some issues with displaying any structures. I get the following error, however I'm not sure whether that's what's causing the actual laggy graphics: "This Executable Build integrates and extends Open-Source PyMOL. Detected OpenGL version 2.0 or greater. Shaders available. Geometry shaders not available SMAA not available Detected GLSL version 1.30. OpenGL graphics engine: GL_VENDOR: Intel Open Source Technology Center GL_RENDERER: Mesa DRI Intel(R) HD Graphics 530 (Skylake GT2) GL_VERSION: 3.0 Mesa 17.0.1 GL_ERROR : 1282" I'm new to Pymol and Linux so please excuse me if I'm missing something. Thanks, Andy -- M.Sc. Andreas Tosstorff Lehrstuhl für Pharmazeutische Technologie und Biopharmazie Department Pharmazie LMU München Butenandtstr. 5-13 ( Haus B) 81377 München Germany Tel.: +49 89 2180 77059 -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net