Re: [PyMOL] Pymol cavity detection error?

[kanika sharma]

Hi Tsjerk,

I tried two_sided_lighting but doesn't have effect. Apparently,
irrespective of the protein the surface is always a black exterior.
Now, I tried display - use display lists and that solves t but makes the
program extremely slow and heavy.
Problem in the interface? Anyone experienced this?

best
Kanika

On Wed, Jun 28, 2017 at 6:13 PM, Tsjerk Wassenaar  wrote:

> Hi Kanika,
>
> Try
>
> set two_sided_lighting
>
> Cheers,
>
> Tsjerk
>
> On Jun 28, 2017 17:14, "kanika sharma"  wrote:
>
>> Dear PyMolers
>>
>> I want to see the cavities in my protein using the following steps:
>>
>> Setting → Surface → Cavities & Pockets Only.
>> Show surface
>> Cavity Detection Radius 5A
>>
>> But I see the surface as a black blob, if I colour it (say white), the
>> external still remains black.
>>
>> Anyone has some suggestions why this happens?
>>
>> I attached a picture of what it looks like.
>>
>> --
>> *Best,*
>>
>> *Kanika *
>>
>>
>>
>> 
>> --
>> Check out the vibrant tech community on one of the world's most
>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>> ___
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>>
>


-- 
*Best,*

*Kanika Sharma*
--
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Re: [PyMOL] Pymol cavity detection error?

[Tsjerk Wassenaar]

Hi Kanika,

Try

set two_sided_lighting

Cheers,

Tsjerk

On Jun 28, 2017 17:14, "kanika sharma"  wrote:

> Dear PyMolers
>
> I want to see the cavities in my protein using the following steps:
>
> Setting → Surface → Cavities & Pockets Only.
> Show surface
> Cavity Detection Radius 5A
>
> But I see the surface as a black blob, if I colour it (say white), the
> external still remains black.
>
> Anyone has some suggestions why this happens?
>
> I attached a picture of what it looks like.
>
> --
> *Best,*
>
> *Kanika *
>
>
>
> 
> --
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> ___
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net