Dear Smith,
The line cmd.extend('save_transformed',save_transformed) adds a new command
to PyMOL, this command is named save_transformed and what is does is to
call the save_transformed function. This function takes two arguments
save_transformed(object,
file), hence the newly created command also accept two arguments, the
object you want to transform and the name of the file for your transformed
object.
Cheers,
Osvaldo.
On Tue, Nov 24, 2015 at 2:34 PM, Smith Liu wrote:
Dear All,
>
> In http://pymolwiki.org/index.php/Modeling_and_Editing_Structures there
> is "save_transformed.py". Will you please show me how to use this script?
> There is no problem to do "run save_transformed.py". But after click that
> command, how to get and save the transformed pdb file?
>
> Smith
>
>
>
>
>
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